UHGV-0210522 (vOTU-030952)

Viral Genome: UHGV-0210522

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0210522
vOTU ID	vOTU-030952
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031435_a1_ct5315_vs1@linear@Siphoviridae__sp._cthAR1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9755
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.52
Jumbo phage	No

Genome content
Genome length (bp)	34,033
GC content	46.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	88%
Average CDS length (bps)	557.61
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0210522_1	phrog_19111	77.8	9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0210522_1	742740.HMPREF9474_03519	288.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0210522_1	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-0210522_2	742740.HMPREF9474_03518	244.0	0	N/A	N/A
PHROG	UHGV-0210522_3	phrog_18725	125.6	3.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0210522_3	1298920.KI911353_gene4838	245.0	0	N/A	N/A
PHROG	UHGV-0210522_4	phrog_13879	641.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0210522_4	742740.HMPREF9474_03516	1367.0	0	N/A	N/A
structural_annotation	UHGV-0210522_4	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_5	phrog_1194	72.6	4.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0210522_5	742740.HMPREF9474_03515	254.0	0	N/A	N/A
structural_annotation	UHGV-0210522_5	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_6	phrog_1535	381.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0210522_6	UniRef90_A0A174WQ97	1110.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0210522_6	742740.HMPREF9474_03514	1307.0	0	tape measure	N/A
COG	UHGV-0210522_6	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0210522_6	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_7	phrog_8355	96.9	7.7e-29	N/A	unknown function
UniRef90	UHGV-0210522_7	UniRef90_UPI001D07612A	177.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0210522_7	742740.HMPREF9474_03513	216.0	0	N/A	N/A
Pfam	UHGV-0210522_7	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0210522_7	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_8	phrog_8300	78.5	6.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0210522_8	742740.HMPREF9474_03512	194.0	0	N/A	N/A
structural_annotation	UHGV-0210522_8	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_9	phrog_820	129.3	1.8e-38	major tail protein	tail
eggNOG-mapper	UHGV-0210522_9	742740.HMPREF9474_03511	314.0	0	domain, Protein	N/A
COG	UHGV-0210522_9	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210522_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_10	phrog_2595	77.8	1.3e-22	head-tail connector protein	connector
UniRef90	UHGV-0210522_10	UniRef90_UPI001D068DAC	183.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0210522_10	742740.HMPREF9474_03510	263.0	0	N/A	N/A
Pfam	UHGV-0210522_10	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0210522_10	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_11	phrog_556	61.2	1.7e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0210522_11	742740.HMPREF9474_03509	206.0	0	N/A	N/A
PHROG	UHGV-0210522_12	phrog_8710	144.5	2.39622e-43	N/A	unknown function
eggNOG-mapper	UHGV-0210522_12	742740.HMPREF9474_03508	221.0	0	N/A	N/A
structural_annotation	UHGV-0210522_12	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_13	phrog_541	93.1	2.3e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0210522_13	742740.HMPREF9474_03507	248.0	0	N/A	N/A
PHROG	UHGV-0210522_14	phrog_1378	71.7	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0210522_14	742740.HMPREF9474_03506	179.0	0	N/A	N/A
PHROG	UHGV-0210522_15	phrog_422	351.6	0	major head protein	head and packaging
UniRef90	UHGV-0210522_15	UniRef90_E7GRG0	595.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0210522_15	742740.HMPREF9474_03505	595.0	0	N/A	N/A
structural_annotation	UHGV-0210522_15	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_16	phrog_2303	145.5	3.60134e-43	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0210522_16	742740.HMPREF9474_03504	283.0	0	N/A	N/A
PHROG	UHGV-0210522_17	phrog_581	243.5	0	minor head protein	head and packaging
UniRef90	UHGV-0210522_17	UniRef90_UPI00138AC1F0	931.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0210522_17	742740.HMPREF9474_03503	543.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0210522_17	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0210522_17	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0210522_17	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210522_17	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_18	phrog_533	290.0	0	portal protein	head and packaging
UniRef90	UHGV-0210522_18	UniRef90_A0A1C7G7K7	916.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0210522_18	742740.HMPREF9474_03501	867.0	0	N/A	N/A
structural_annotation	UHGV-0210522_18	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_19	phrog_28292	137.4	2.50006e-41	N/A	unknown function
UniRef90	UHGV-0210522_19	UniRef90_A0A8B3BZ84	102.0	6.77e-27	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-0210522_19	500632.CLONEX_01438	85.1	5.78e-21	N/A	N/A
KOfam	UHGV-0210522_21	K06909	82.1	7.6e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0210522_21	phrog_2	67.4	2.9e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0210522_21	UniRef90_A0A1C6HKR0	865.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0210522_21	742740.HMPREF9474_03500	830.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0210522_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0210522_21	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0210522_22	K07474	152.6	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0210522_22	phrog_51	150.7	5.60519e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0210522_22	UniRef90_A0A3E2WBT1	322.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0210522_22	1304866.K413DRAFT_0812	189.0	0	Terminase small subunit	N/A
Pfam	UHGV-0210522_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0210522_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0210522_22	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210522_23	1211817.CCAT010000041_gene3730	60.1	0.000000249	N/A	N/A
structural_annotation	UHGV-0210522_23	PF11325,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_24	phrog_9194	91.9	4.9e-27	N/A	unknown function
UniRef90	UHGV-0210522_24	UniRef90_UPI00082E0791	174.0	0	nucleotidyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-0210522_24	316056.RPC_4006	70.1	0.00000000000125	N/A	N/A
PHROG	UHGV-0210522_25	phrog_36	80.8	2e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210522_25	UniRef90_UPI001D089637	248.0	0	N/A	N/A
eggNOG-mapper	UHGV-0210522_25	1304866.K413DRAFT_3028	186.0	0	N/A	N/A
structural_annotation	UHGV-0210522_25	PF04545	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0210522_26	cluster_47354	147.0	0	NA	N/A
KOfam	UHGV-0210522_31	K21527	42.7	0.0000000000073	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0210522_31	phrog_1384	97.9	9.1e-29	Mom-like DNA modification protein	other
UniRef90	UHGV-0210522_31	UniRef90_A0A0K2CZB3	173.0	0	Acetyltransferase	N/A
eggNOG-mapper	UHGV-0210522_31	1121468.AUBR01000007_gene285	91.3	7.22e-21	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0210522_31	PF11039,MF_02210,NF040503,COG1247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210522_34	PF04319	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210522_35	UniRef90_A0A2N0K765	186.0	0	N/A	N/A
Pfam	UHGV-0210522_35	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0210522_36	phrog_424	58.7	7.2e-17	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0210522_36	UniRef90_A0A2N0K787	642.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0210522_36	1235800.C819_02256	499.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0210522_36	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0210522_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0210522_36	PF01507,MF_00063,TIGR02055,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210522_37	411462.DORLON_00765	88.2	1.23e-19	N/A	N/A
Pfam	UHGV-0210522_37	PF02026	N/A	N/A	RyR domain	RyR
UniRef90	UHGV-0210522_39	UniRef90_A0A1E3U7L9	66.2	0.00000000000478	LexA_DNA_bind domain-containing protein	N/A
COG	UHGV-0210522_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
PHROG	UHGV-0210522_40	phrog_15768	205.2	0	N/A	unknown function
UniRef90	UHGV-0210522_40	UniRef90_C0DA60	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0210522_40	33035.JPJF01000122_gene2459	130.0	1.19e-34	N/A	N/A
AcrCatalog	UHGV-0210522_40	cluster_38323	226.0	0	NA	N/A
Pfam	UHGV-0210522_40	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0210522_40	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_41	phrog_398	201.6	0	N/A	unknown function
UniRef90	UHGV-0210522_41	UniRef90_UPI00068C968F	234.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0210522_41	33035.JPJF01000122_gene2462	234.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0210522_41	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0210522_41	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_42	phrog_14970	302.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0210522_42	411468.CLOSCI_00315	252.0	0	double-strand break repair protein	N/A
COG	UHGV-0210522_42	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0210522_42	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210522_43	PF11302,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_47	phrog_36464	83.5	2.4e-24	N/A	unknown function
UniRef90	UHGV-0210522_47	UniRef90_R6QN85	80.9	1.67e-18	50S ribosomal protein L11 domain protein	N/A
eggNOG-mapper	UHGV-0210522_47	742740.HMPREF9474_03484	158.0	0	N/A	N/A
structural_annotation	UHGV-0210522_47	PF09035	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210522_48	742740.HMPREF9474_03483	252.0	0	N/A	N/A
structural_annotation	UHGV-0210522_48	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210522_50	UniRef90_UPI0006C815FC	126.0	3.96e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0210522_50	1329250.WOSG25_021910	50.1	0.000000528	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0210522_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0210522_50	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0210522_51	K22299	44.0	0.0000000000042	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0210522_51	phrog_8	57.1	4.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0210522_51	UniRef90_UPI00192D7752	278.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0210522_51	665950.HMPREF1025_02562	98.6	1.71e-24	TRANSCRIPTIONal	N/A
Pfam	UHGV-0210522_51	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0210522_51	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0210522_51	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_52	phrog_87	100.5	1.1e-29	metallo-protease	other
UniRef90	UHGV-0210522_52	UniRef90_UPI001923E1F1	262.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0210522_52	318464.IO99_00420	116.0	1.84e-31	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0210522_52	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0210522_52	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0210522_52	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0210522_53	phrog_4431	119.2	2.5e-35	N/A	unknown function
UniRef90	UHGV-0210522_53	UniRef90_UPI001924AC1A	437.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0210522_53	1298920.KI911353_gene4876	285.0	0	N/A	N/A
Pfam	UHGV-0210522_53	PF06897	N/A	N/A	N/A	DUF1269
Pfam	UHGV-0210522_53	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0210522_53	PF05120	N/A	N/A	N/A	N/A
KOfam	UHGV-0210522_54	K14059	181.5	0	int; integrase	N/A
PHROG	UHGV-0210522_54	phrog_1	161.0	0	integrase	integration and excision
UniRef90	UHGV-0210522_54	UniRef90_A0A1C6K4B6	719.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0210522_54	742740.HMPREF9474_03478	719.0	0	DNA integration	N/A
Pfam	UHGV-0210522_54	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0210522_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0210522_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0210522_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A