UHGV-0210563 (vOTU-132975)

Viral Genome: UHGV-0210563

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0210563
vOTU ID	vOTU-132975
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252253_a1_ct50154_vs1@Siphoviridae__sp._ctSc91
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.38
Jumbo phage	No

Genome content
Genome length (bp)	21,525
GC content	52.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	38
CDS density	96%
Average CDS length (bps)	541.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0210563_2	K06400	280.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0210563_2	phrog_95	297.9	0	integrase	integration and excision
UniRef90	UHGV-0210563_2	UniRef90_A0A3A9I9T1	376.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0210563_2	357809.Cphy_2997	298.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0210563_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0210563_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0210563_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0210563_2	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0210563_3	1232443.BAIA02000078_gene6	58.2	0.00000000231	N/A	N/A
PHROG	UHGV-0210563_4	phrog_28802	41.8	0.0000000000024	N/A	unknown function
PHROG	UHGV-0210563_5	phrog_20016	171.1	0	N/A	unknown function
UniRef90	UHGV-0210563_5	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0210563_5	397290.C810_05214	155.0	0	N/A	N/A
structural_annotation	UHGV-0210563_5	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_7	phrog_16490	124.1	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-0210563_7	1408437.JNJN01000043_gene803	140.0	2.28e-38	N/A	N/A
PHROG	UHGV-0210563_8	phrog_22984	68.5	7e-20	N/A	unknown function
PHROG	UHGV-0210563_9	phrog_21718	111.0	8.4e-33	N/A	unknown function
eggNOG-mapper	UHGV-0210563_9	397290.C810_05210	68.9	0.00000000000142	N/A	N/A
PHROG	UHGV-0210563_10	phrog_3754	114.1	9.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0210563_10	1226322.HMPREF1545_00073	166.0	0	N/A	N/A
UniRef90	UHGV-0210563_13	UniRef90_A0A096AZ46	127.0	6.85e-35	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0210563_13	742738.HMPREF9460_04059	127.0	1.15e-35	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0210563_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0210563_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0210563_13	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_14	phrog_374	77.3	2.6e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0210563_14	UniRef90_UPI0013E340D3	85.1	1.15e-16	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210563_14	478749.BRYFOR_06178	109.0	6.07e-26	AP2 domain protein	N/A
structural_annotation	UHGV-0210563_14	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_15	phrog_21825	118.6	5e-35	endolysin	lysis
UniRef90	UHGV-0210563_15	UniRef90_R5SN87	273.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210563_15	1007096.BAGW01000017_gene816	130.0	7.43e-35	CHAP domain	N/A
Pfam	UHGV-0210563_15	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0210563_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0210563_15	TIGR02594	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_16	phrog_13256	64.6	9.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0210563_16	1226322.HMPREF1545_00132	74.3	9.25e-17	N/A	N/A
PHROG	UHGV-0210563_18	phrog_937	44.4	0.0000000000029	hemolysin	other
eggNOG-mapper	UHGV-0210563_18	1519439.JPJG01000023_gene533	77.0	4.14e-17	N/A	N/A
Pfam	UHGV-0210563_23	PF18902	N/A	N/A	N/A	DUF5658
structural_annotation	UHGV-0210563_23	PF18902	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210563_24	PF04017,MF_01602,NF010922,COG0095	N/A	N/A	N/A	N/A
UniRef90	UHGV-0210563_26	UniRef90_A0A810QCC8	157.0	1.77e-39	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0210563_26	1235797.C816_04179	209.0	0	Chaperone of endosialidase	N/A
PHROG	UHGV-0210563_27	phrog_6616	42.7	0.0000000000032	tail protein	tail
UniRef90	UHGV-0210563_27	UniRef90_A0A2Z4QA17	260.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0210563_27	1235797.C816_04180	309.0	0	N/A	N/A
structural_annotation	UHGV-0210563_27	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_28	phrog_1194	85.5	4.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0210563_28	1232443.BAIA02000078_gene17	122.0	1.93e-34	N/A	N/A
structural_annotation	UHGV-0210563_28	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_29	phrog_1535	100.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0210563_29	UniRef90_A0A810PX76	173.0	2.74935e-42	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0210563_29	1235797.C816_04182	293.0	0	SLT domain	N/A
COG	UHGV-0210563_29	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0210563_29	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_30	phrog_806	68.7	7.2e-20	N/A	unknown function
UniRef90	UHGV-0210563_30	UniRef90_UPI00137B5163	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0210563_30	397290.C810_05150	139.0	7.62e-39	N/A	N/A
Pfam	UHGV-0210563_30	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0210563_30	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_31	phrog_706	124.8	5.9e-37	N/A	unknown function
UniRef90	UHGV-0210563_31	UniRef90_UPI000682A80B	252.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0210563_31	693746.OBV_18170	239.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0210563_31	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0210563_31	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_32	phrog_11299	87.7	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0210563_32	693746.OBV_18160	102.0	3.96e-26	N/A	N/A
structural_annotation	UHGV-0210563_32	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_33	phrog_3099	85.9	4.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0210563_33	1232443.BAIA02000078_gene23	197.0	0	N/A	N/A
structural_annotation	UHGV-0210563_33	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_34	phrog_3266	61.4	1.3e-17	tail completion	connector
eggNOG-mapper	UHGV-0210563_34	1232443.BAIA02000078_gene24	192.0	0	N/A	N/A
structural_annotation	UHGV-0210563_34	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_35	phrog_556	68.8	6.5e-20	minor head protein	head and packaging
UniRef90	UHGV-0210563_35	UniRef90_UPI00195E1497	183.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0210563_35	1226322.HMPREF1545_00054	145.0	3.82554e-43	Minor capsid protein	N/A
Pfam	UHGV-0210563_35	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0210563_35	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_36	phrog_3366	87.0	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0210563_36	1226322.HMPREF1545_00053	151.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0210563_36	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0210563_37	phrog_541	107.3	8.6e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0210563_37	642492.Clole_0822	65.9	0.00000000000786	N/A	N/A
PHROG	UHGV-0210563_38	phrog_10	173.5	0	major head protein	head and packaging
UniRef90	UHGV-0210563_38	UniRef90_A0A2U1BEF2	516.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0210563_38	1226322.HMPREF1545_00050	473.0	0	Phage capsid family	N/A
Pfam	UHGV-0210563_38	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0210563_38	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0210563_38	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0210563_38	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A