UHGV-0211076 (vOTU-048719)

Viral Genome: UHGV-0211076

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0211076
vOTU ID	vOTU-048719
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031291_a1_ct4314@circular@Myoviridae__sp._ctbCw314
Associated BioSample	SAMN11031291
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9707
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.41
Jumbo phage	No

Genome content
Genome length (bp)	35,300
GC content	42.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	92%
Average CDS length (bps)	558.57
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0211076_1	phrog_20388	128.7	3.6e-38	endolysin	lysis
UniRef90	UHGV-0211076_1	UniRef90_A0A173URX4	784.0	0	Exo-glucosaminidase lytG	N/A
eggNOG-mapper	UHGV-0211076_1	476272.RUMHYD_02876	762.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0211076_1	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0211076_1	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0211076_1	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0211076_1	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0211076_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0211076_1	PF01183,PF01471,PF08239,NF040675,TIGR02594,COG3757,COG3409,COG3807	N/A	N/A	N/A	N/A
UniRef90	UHGV-0211076_3	UniRef90_A0A4S2A7A9	114.0	3.49e-32	N/A	N/A
Pfam	UHGV-0211076_3	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-0211076_3	PF03869,NF008671,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0211076_4	K06400	306.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0211076_4	phrog_95	305.7	0	integrase	integration and excision
UniRef90	UHGV-0211076_4	UniRef90_UPI001571473A	630.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0211076_4	411459.RUMOBE_00967	508.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0211076_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0211076_4	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0211076_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0211076_4	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_5	phrog_5978	292.8	0	N/A	unknown function
UniRef90	UHGV-0211076_5	UniRef90_UPI001D077A60	578.0	0	Fic family protein	N/A
eggNOG-mapper	UHGV-0211076_5	1131462.DCF50_p1830	479.0	0	PFAM Fic DOC family	N/A
Pfam	UHGV-0211076_5	PF13784	N/A	N/A	Fic/DOC family N-terminal	Fic_N
Pfam	UHGV-0211076_5	PF02661	N/A	N/A	Fic/DOC family	Fic
COG	UHGV-0211076_5	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0211076_5	PF02661,PF13784,PF21248,MF_01819,NF040876,COG3177	N/A	N/A	N/A	N/A
UniRef90	UHGV-0211076_8	UniRef90_A0A3C1XLX5	89.0	6.34e-22	N/A	N/A
eggNOG-mapper	UHGV-0211076_8	718252.FP2_11360	82.4	4.13e-20	N/A	N/A
Pfam	UHGV-0211076_8	PF13711	N/A	N/A	N/A	DUF4160
eggNOG-mapper	UHGV-0211076_9	457412.RSAG_01053	131.0	5.6e-39	N/A	N/A
PHROG	UHGV-0211076_10	phrog_16228	204.1	0	N/A	unknown function
UniRef90	UHGV-0211076_10	UniRef90_UPI00164A1A25	271.0	0	Uma2 family endonuclease	N/A
eggNOG-mapper	UHGV-0211076_10	537007.BLAHAN_04955	268.0	0	Putative restriction endonuclease	N/A
Pfam	UHGV-0211076_10	PF05685	N/A	N/A	Putative restriction endonuclease	Uma2
COG	UHGV-0211076_10	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0211076_10	PF05685,COG4636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0211076_12	742723.HMPREF9477_00941	131.0	2.58e-32	dextransucrase activity	N/A
COG	UHGV-0211076_12	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
UniRef90	UHGV-0211076_14	UniRef90_UPI001BC85B83	143.0	1.04004e-41	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_14	903814.ELI_1263	92.0	2.54e-22	Helix-turn-helix domain	N/A
Pfam	UHGV-0211076_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0211076_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0211076_14	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_24	phrog_3584	159.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0211076_24	UniRef90_UPI001D0EB55A	223.0	0	helitron helicase-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_24	1232453.BAIF02000027_gene4199	196.0	0	N/A	N/A
structural_annotation	UHGV-0211076_24	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0211076_25	K03469	65.4	1.2e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0211076_25	phrog_531	52.8	0.000000000000007	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0211076_25	UniRef90_D7CUI4	75.9	0.00000000000000736	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0211076_25	649638.Trad_2665	75.9	0.00000000000000123	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0211076_25	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0211076_25	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0211076_25	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_26	phrog_7566	114.3	4.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0211076_26	665950.HMPREF1025_02547	95.9	1.02e-23	N/A	N/A
structural_annotation	UHGV-0211076_28	PF07453	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_30	phrog_2245	63.5	4e-18	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0211076_30	PF12643,NF002747,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_31	phrog_954	230.3	0	DNA methyltransferase	other
UniRef90	UHGV-0211076_31	UniRef90_UPI001898E47B	240.0	0	SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0211076_31	1395513.P343_12775	229.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
PADLOC	UHGV-0211076_31	MTase_II_00074	226.3	0	Type II methyltransferase	RM
COG	UHGV-0211076_31	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0211076_31	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_32	phrog_15198	48.9	6.2e-17	N/A	unknown function
UniRef90	UHGV-0211076_32	UniRef90_UPI00092FE47F	84.3	1.64e-18	N/A	N/A
eggNOG-mapper	UHGV-0211076_32	742723.HMPREF9477_00919	52.0	0.00000259	N/A	N/A
Pfam	UHGV-0211076_32	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0211076_34	1235798.C817_01884	112.0	2.52e-31	N/A	N/A
PHROG	UHGV-0211076_35	phrog_19011	45.1	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0211076_36	476272.RUMHYD_02840	219.0	0	N/A	N/A
structural_annotation	UHGV-0211076_36	PF19962,COG1579	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_37	phrog_36	65.9	7.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0211076_37	UniRef90_R6ZAS5	149.0	3.43318e-43	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_37	476272.RUMHYD_02841	276.0	0	N/A	N/A
structural_annotation	UHGV-0211076_37	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0211076_39	UniRef90_A0A416J0I8	81.6	3.92e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0211076_39	1304866.K413DRAFT_0813	64.7	0.000000000000275	N/A	N/A
structural_annotation	UHGV-0211076_39	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_40	phrog_119	59.4	5.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0211076_40	UniRef90_A0A412UTE1	159.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0211076_40	908340.HMPREF9406_2583	151.0	0	HNH nucleases	N/A
COG	UHGV-0211076_40	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0211076_40	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_42	phrog_361	94.8	7.6e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0211076_42	UniRef90_A0A1Y4FAU6	194.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0211076_42	1235798.C817_04581	187.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0211076_42	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0211076_42	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_43	phrog_9	295.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0211076_43	UniRef90_A0A3D1FL87	980.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0211076_43	1235798.C817_04582	933.0	0	Phage Terminase	N/A
Pfam	UHGV-0211076_43	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0211076_43	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0211076_43	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0211076_43	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_44	phrog_12	174.9	0	portal protein	head and packaging
UniRef90	UHGV-0211076_44	UniRef90_A0A3D1FM97	572.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0211076_44	1235798.C817_04583	490.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0211076_44	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0211076_44	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0211076_44	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0211076_44	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0211076_45	K06904	145.7	4.2039e-43	N/A	N/A
PHROG	UHGV-0211076_45	phrog_80	172.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0211076_45	UniRef90_A0A8G1TPN9	283.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0211076_45	33035.JPJF01000039_gene272	283.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0211076_45	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0211076_45	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0211076_45	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0211076_45	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_46	phrog_10	191.4	0	major head protein	head and packaging
UniRef90	UHGV-0211076_46	UniRef90_A0A143XZI6	548.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0211076_46	1235798.C817_04585	429.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0211076_46	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0211076_46	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0211076_46	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0211076_46	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0211076_47	476272.RUMHYD_02855	53.9	0.000000174	N/A	N/A
structural_annotation	UHGV-0211076_47	PF18207	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_48	phrog_2550	66.5	2.6e-19	N/A	unknown function
UniRef90	UHGV-0211076_48	UniRef90_R5V091	62.0	0.000000000138	Phage related protein	N/A
eggNOG-mapper	UHGV-0211076_48	1235798.C817_04586	94.7	3.5e-24	N/A	N/A
structural_annotation	UHGV-0211076_48	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_49	phrog_19734	106.5	2e-31	N/A	unknown function
UniRef90	UHGV-0211076_49	UniRef90_A0A3R6AW46	133.0	4.75e-38	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0211076_49	1235798.C817_04587	123.0	6.56e-35	N/A	N/A
structural_annotation	UHGV-0211076_49	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0211076_50	1235798.C817_04588	125.0	8.82e-36	N/A	N/A
structural_annotation	UHGV-0211076_50	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_51	phrog_5	51.5	0.000000000000019	tail completion or Neck1 protein	connector
UniRef90	UHGV-0211076_51	UniRef90_R6FMT8	146.0	8.53951e-42	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0211076_51	1235798.C817_04589	189.0	0	N/A	N/A
NCBIFam	UHGV-0211076_51	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0211076_51	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_52	phrog_88	65.0	1.4e-18	major tail protein	tail
UniRef90	UHGV-0211076_52	UniRef90_A0A1Y4R540	209.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_52	33035.JPJF01000039_gene278	183.0	0	N/A	N/A
Pfam	UHGV-0211076_52	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0211076_52	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0211076_53	1235798.C817_04591	124.0	1.44e-34	N/A	N/A
structural_annotation	UHGV-0211076_53	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0211076_55	K10398	49.7	3.8e-18	KIF11, EG5; kinesin family member 11	N/A
PHROG	UHGV-0211076_55	phrog_1272	304.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0211076_55	UniRef90_A0A1Y4R6K5	442.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_55	411468.CLOSCI_00194	387.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0211076_55	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0211076_55	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0211076_55	TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_56	phrog_33	67.8	2.6e-19	distal tail protein Dit	tail
UniRef90	UHGV-0211076_56	UniRef90_A0A3R6C171	253.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0211076_56	1235798.C817_04593	272.0	0	phage tail	N/A
NCBIFam	UHGV-0211076_56	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0211076_56	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0211076_56	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0211076_57	phrog_13289	424.8	0	tail protein	tail
UniRef90	UHGV-0211076_57	UniRef90_A0A1Y4EZM1	653.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0211076_57	1235798.C817_02568	454.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0211076_57	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0211076_57	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0211076_57	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
PHROG	UHGV-0211076_58	phrog_21765	118.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0211076_58	476272.RUMHYD_01994	260.0	0	N/A	N/A
structural_annotation	UHGV-0211076_58	PF10651,NF040788,COG2372	N/A	N/A	N/A	N/A