UHGV-0212047 (vOTU-071636)

Viral Genome: UHGV-0212047

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212047
vOTU ID	vOTU-071636
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252295_a1_ct320600_vs1@Siphoviridae__sp._ctmdP1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.46 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.16
Jumbo phage	No

Genome content
Genome length (bp)	33,094
GC content	58.04%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	91%
Average CDS length (bps)	526.47
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0212047_1	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_2	phrog_88	54.3	0.0000000000000017	major tail protein	tail
UniRef90	UHGV-0212047_2	UniRef90_A0A174CNN5	67.4	0.000000000233	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0212047_2	1195236.CTER_5106	72.8	0.000000000000341	phage major tail protein, phi13 family	N/A
COG	UHGV-0212047_2	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212047_2	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212047_3	1203606.HMPREF1526_00974	89.0	1.92e-20	N/A	N/A
structural_annotation	UHGV-0212047_3	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212047_4	1203606.HMPREF1526_00975	83.2	3.55e-19	N/A	N/A
structural_annotation	UHGV-0212047_4	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_5	phrog_1951	84.3	9.8e-25	head-tail adaptor	connector
UniRef90	UHGV-0212047_5	UniRef90_UPI0009B2373C	70.5	0.000000000000119	phage head closure protein	N/A
eggNOG-mapper	UHGV-0212047_5	1121428.DESHY_20140___1	67.4	0.000000000000345	head-tail adaptor	N/A
COG	UHGV-0212047_5	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0212047_5	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_6	phrog_5223	56.1	5.1e-16	neck protein	connector
UniRef90	UHGV-0212047_6	UniRef90_UPI000BEC4770	61.6	0.000000000205	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0212047_6	411465.PEPMIC_00737	61.2	0.0000000000499	N/A	N/A
structural_annotation	UHGV-0212047_6	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_7	phrog_10	173.6	0	major head protein	head and packaging
UniRef90	UHGV-0212047_7	UniRef90_UPI0018AA1B7F	359.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0212047_7	318464.IO99_13750	328.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0212047_7	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0212047_7	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0212047_7	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0212047_7	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_8	K01358	134.7	9.3e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0212047_8	phrog_94	201.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0212047_8	UniRef90_U4R420	257.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0212047_8	1203606.HMPREF1526_00979	218.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0212047_8	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0212047_8	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0212047_8	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_9	phrog_12	161.0	0	portal protein	head and packaging
UniRef90	UHGV-0212047_9	UniRef90_R8W4B0	457.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0212047_9	1203606.HMPREF1526_00980	457.0	0	Portal protein	N/A
Pfam	UHGV-0212047_9	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0212047_9	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0212047_9	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_10	phrog_9	401.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0212047_10	UniRef90_UPI001D07C789	799.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0212047_10	1203606.HMPREF1526_00981	757.0	0	Terminase	N/A
Pfam	UHGV-0212047_10	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0212047_10	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0212047_10	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0212047_10	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_11	phrog_1066	115.0	3.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0212047_11	1382358.JHVN01000024_gene1703	105.0	8.82e-28	N/A	N/A
structural_annotation	UHGV-0212047_11	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212047_12	UniRef90_R6M5E4	117.0	5.58e-32	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-0212047_12	1235793.C809_01915	115.0	9.08e-32	HNH endonuclease	N/A
COG	UHGV-0212047_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0212047_13	phrog_3584	124.8	7.4e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212047_13	742738.HMPREF9460_00867	127.0	4.99e-33	N/A	N/A
structural_annotation	UHGV-0212047_13	PF01446,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_17	phrog_2118	97.8	1.3e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212047_17	UniRef90_A0A417HX51	199.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0212047_17	1511.CLOST_1546	116.0	3.41e-32	HNH endonuclease	N/A
Pfam	UHGV-0212047_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0212047_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0212047_17	TIGR02646,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_20	K03497	84.0	2.7e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0212047_20	phrog_27290	339.7	0	N/A	unknown function
UniRef90	UHGV-0212047_20	UniRef90_UPI0003130F10	301.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_20	1007096.BAGW01000033_gene1613	301.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0212047_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0212047_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0212047_20	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_21	K03496	189.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0212047_21	phrog_164	161.2	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212047_21	UniRef90_A0A845R968	307.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0212047_21	742738.HMPREF9460_00854	200.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0212047_21	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0212047_21	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0212047_21	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_22	K02314	237.5	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0212047_22	phrog_19	228.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212047_22	UniRef90_A0A3D1V9Y4	229.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0212047_22	663278.Ethha_2283	145.0	6.6e-36	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0212047_22	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0212047_22	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0212047_22	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0212047_22	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_23	phrog_270	102.6	5.4e-30	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212047_23	UniRef90_UPI001F33ADD3	197.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_23	663278.Ethha_1883	116.0	3.54e-28	N/A	N/A
Pfam	UHGV-0212047_23	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0212047_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0212047_23	PF02295,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212047_25	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_27	phrog_66	40.9	0.000000000048	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0212047_27	UniRef90_A0A4Q6BTM0	50.1	0.00000358	DNA-binding protein	N/A
Pfam	UHGV-0212047_27	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0212047_27	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0212047_27	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0212047_27	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_29	phrog_6499	116.8	9.5e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212047_29	UniRef90_A0A3D4EJF0	127.0	8.6e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0212047_29	1415774.U728_1274	108.0	3.38e-28	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0212047_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212047_29	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0212047_29	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_30	K22300	70.2	4.5e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0212047_30	phrog_8	54.4	0.0000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212047_30	UniRef90_UPI001BB47897	70.5	0.0000000000000213	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_30	1114965.Spaf_1853	62.8	0.0000000000133	Transcriptional	N/A
Pfam	UHGV-0212047_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212047_30	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0212047_30	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_34	K22300	62.9	7.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0212047_34	phrog_8	62.8	6.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212047_34	UniRef90_UPI000D1E8240	69.3	0.000000000000354	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_34	1321773.HMPREF9069_00857	62.4	0.000000000153	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0212047_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212047_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0212047_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0212047_35	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0212047_35	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_36	phrog_10292	41.2	0.0000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0212047_36	411473.RUMCAL_01852	85.1	6.84e-18	TM2 domain	N/A
Pfam	UHGV-0212047_36	PF05154	N/A	N/A	TM2 domain	TM2
Pfam	UHGV-0212047_36	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
COG	UHGV-0212047_36	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_37	K18843	55.1	0.0000000000000015	hicB; antitoxin HicB	N/A
PHROG	UHGV-0212047_37	phrog_497	69.3	7.6e-20	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0212047_37	UniRef90_R9J961	189.0	0	HicB-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_37	1235802.C823_00645	191.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0212047_37	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0212047_37	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0212047_37	PF15919,COG1598	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212047_38	UniRef90_UPI00137A5F85	77.4	1.94e-17	type II toxin-antitoxin system HicA family toxin	N/A
eggNOG-mapper	UHGV-0212047_38	1235835.C814_03453	73.9	7.87e-17	N/A	N/A
structural_annotation	UHGV-0212047_38	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0212047_39	K14059	213.4	0	int; integrase	N/A
PHROG	UHGV-0212047_39	phrog_1	183.7	0	integrase	integration and excision
UniRef90	UHGV-0212047_39	UniRef90_UPI00137B35AA	223.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0212047_39	903814.ELI_2773	209.0	0	Phage integrase family	N/A
Pfam	UHGV-0212047_39	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0212047_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0212047_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0212047_39	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212047_40	UniRef90_A0A7M1RS47	55.1	0.00000164	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0212047_40	1408437.JNJN01000043_gene801	77.0	0.00000000000000359	N/A	N/A
structural_annotation	UHGV-0212047_44	NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_46	phrog_1129	66.4	3.1e-19	holin	lysis
UniRef90	UHGV-0212047_46	UniRef90_UPI00189DD88C	125.0	5.96e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0212047_46	1226322.HMPREF1545_00069	127.0	2.53e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0212047_46	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0212047_46	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212047_47	UniRef90_A0A3A9IW95	114.0	3.2e-31	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0212047_47	742740.HMPREF9474_03521	109.0	3.61e-30	N/A	N/A
PHROG	UHGV-0212047_48	phrog_14030	165.3	0	N/A	unknown function
UniRef90	UHGV-0212047_48	UniRef90_A0A316NTC6	202.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212047_48	1121115.AXVN01000051_gene809	187.0	0	NLP P60 protein	N/A
Pfam	UHGV-0212047_48	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0212047_48	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0212047_48	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0212047_48	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_49	phrog_27545	83.4	2.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0212047_49	1122971.BAME01000151_gene6566	104.0	7.61e-26	N/A	N/A
eggNOG-mapper	UHGV-0212047_51	742733.HMPREF9469_05009	66.6	0.000000000138	N/A	N/A
PHROG	UHGV-0212047_52	phrog_13589	168.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0212047_52	742733.HMPREF9469_05009	228.0	0	N/A	N/A
structural_annotation	UHGV-0212047_54	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212047_55	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-0212047_56	phrog_26795	115.2	3.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0212047_56	997296.PB1_16154	144.0	2.76e-37	N/A	N/A
structural_annotation	UHGV-0212047_56	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A