UHGV-0212468 (vOTU-156636)

Viral Genome: UHGV-0212468

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212468
vOTU ID	vOTU-156636
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781760_a1_ct116043_vs1@Siphoviridae__sp._cthWB1
Associated BioSample	SAMN09781760
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.46 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.02
Jumbo phage	No

Genome content
Genome length (bp)	26,073
GC content	39.86%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	92%
Average CDS length (bps)	612.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 69.46)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0212468_1	phrog_13845	115.3	2.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0212468_1	1399942.U3PDR2_9CAUD	102.0	2.86e-27	N/A	N/A
PHROG	UHGV-0212468_2	phrog_9	291.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0212468_2	UniRef90_A0A075KKZ0	889.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0212468_2	508419.F8J159_9CAUD	894.0	0	Phage Terminase	N/A
Pfam	UHGV-0212468_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0212468_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0212468_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_3	phrog_12	186.1	0	portal protein	head and packaging
UniRef90	UHGV-0212468_3	UniRef90_A0A843HZ12	474.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0212468_3	1399942.U3PFW0_9CAUD	466.0	0	Phage portal protein	N/A
Pfam	UHGV-0212468_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0212468_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0212468_3	PF04860,PF08184,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0212468_4	K01358	86.5	4.3e-25	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0212468_4	phrog_94	165.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0212468_4	UniRef90_A0A1Q6M1U6	212.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0212468_4	536232.CLM_2932	164.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0212468_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0212468_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0212468_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_5	phrog_10	192.1	0	major head protein	head and packaging
UniRef90	UHGV-0212468_5	UniRef90_A0A168E1E5	342.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0212468_5	1304866.K413DRAFT_1225	323.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0212468_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0212468_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0212468_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0212468_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_6	phrog_40	44.9	0.0000000000015	head-tail adaptor Ad1	connector
UniRef90	UHGV-0212468_6	UniRef90_A0A6P1MNU9	104.0	3.71e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0212468_6	508419.F8J164_9CAUD	104.0	6.59e-28	N/A	N/A
NCBIFam	UHGV-0212468_6	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0212468_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_7	phrog_25	55.5	0.000000000000001	head closure Hc1	connector
UniRef90	UHGV-0212468_7	UniRef90_A0A843I196	146.0	1.48538e-43	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0212468_7	508419.F8J165_9CAUD	126.0	2.45e-36	Phage head-tail joining protein	N/A
Pfam	UHGV-0212468_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0212468_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0212468_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212468_8	UniRef90_A0A843HUI9	113.0	2.09e-29	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0212468_8	508419.F8J166_9CAUD	164.0	0	N/A	N/A
structural_annotation	UHGV-0212468_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_9	phrog_78	51.5	0.000000000000018	tail terminator	connector
UniRef90	UHGV-0212468_9	UniRef90_UPI0003697F12	68.9	0.000000000000775	N/A	N/A
eggNOG-mapper	UHGV-0212468_9	1399942.U3PDS3_9CAUD	125.0	1.16e-35	N/A	N/A
structural_annotation	UHGV-0212468_9	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_10	phrog_88	109.0	4e-32	major tail protein	tail
UniRef90	UHGV-0212468_10	UniRef90_A0A075KJR8	254.0	0	Putative major tail protein	N/A
eggNOG-mapper	UHGV-0212468_10	1399942.U3PBH4_9CAUD	254.0	0	N/A	N/A
NCBIFam	UHGV-0212468_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0212468_10	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_11	phrog_2115	69.3	6.5e-20	tail protein	tail
eggNOG-mapper	UHGV-0212468_11	1399942.U3PCS7_9CAUD	124.0	1.8e-35	N/A	N/A
structural_annotation	UHGV-0212468_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_12	phrog_9959	142.1	2.7003e-42	tail length tape measure protein	tail
UniRef90	UHGV-0212468_12	UniRef90_A0A8A2WB45	175.0	9.24016e-42	Tape measure protein	N/A
eggNOG-mapper	UHGV-0212468_12	411470.RUMGNA_02228	259.0	0	tape measure	N/A
Pfam	UHGV-0212468_12	PF20155	N/A	N/A	Tape measure protein	TMP_3
COG	UHGV-0212468_12	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0212468_13	phrog_33	67.2	3.8e-19	distal tail protein Dit	tail
UniRef90	UHGV-0212468_13	UniRef90_A0A075KJA3	282.0	0	Putative tail component	N/A
eggNOG-mapper	UHGV-0212468_13	1399942.U3PIW9_9CAUD	285.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0212468_13	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0212468_13	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_14	phrog_1084	48.2	0.00000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0212468_14	1399942.U3PDS7_9CAUD	118.0	5.32e-33	N/A	N/A
structural_annotation	UHGV-0212468_14	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
Pfam	UHGV-0212468_15	PF19079	N/A	N/A	Collagen-flanked surface repeat	CFSR
eggNOG-mapper	UHGV-0212468_16	910314.HMPREF9220_1078	52.8	0.000000273	N/A	N/A
structural_annotation	UHGV-0212468_16	PF08481,NF032891,COG5456	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212468_19	NF033677	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_20	phrog_24267	103.0	3.4e-30	N/A	unknown function
UniRef90	UHGV-0212468_20	UniRef90_A0A679FNR6	90.9	5.03e-19	Putative structural protein	N/A
eggNOG-mapper	UHGV-0212468_20	1235796.C815_00905	115.0	1.56e-27	N/A	N/A
structural_annotation	UHGV-0212468_20	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212468_21	PF10618	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0212468_22	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0212468_22	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_23	phrog_1067	346.7	0	minor head protein	head and packaging
UniRef90	UHGV-0212468_23	UniRef90_A0A2P1CCB3	576.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0212468_23	1399942.U3PFX4_9CAUD	569.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0212468_23	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0212468_23	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0212468_23	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_24	phrog_372	288.0	0	tail protein	tail
UniRef90	UHGV-0212468_24	UniRef90_A0A4D6B7C6	173.0	1.55544e-43	Capsid and scaffold protein	N/A
eggNOG-mapper	UHGV-0212468_24	1123315.AUIP01000001_gene1436	173.0	2.66247e-44	N/A	N/A
Pfam	UHGV-0212468_24	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0212468_24	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
KOfam	UHGV-0212468_25	K06400	274.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0212468_25	phrog_95	281.6	0	integrase	integration and excision
UniRef90	UHGV-0212468_25	UniRef90_UPI0011073ABB	227.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0212468_25	272563.CD630_29520	198.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0212468_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0212468_25	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0212468_25	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0212468_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0212468_25	PF00239,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0212468_26	K14056	65.6	8e-19	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0212468_26	phrog_3	55.2	0.0000000000000032	transcriptional repressor	transcription regulation
UniRef90	UHGV-0212468_26	UniRef90_R6AML4	83.6	1.56e-18	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0212468_26	224719.Abm4_1037	59.3	0.000000000674	IrrE N-terminal-like domain	N/A
PADLOC	UHGV-0212468_26	retron_type_VI_hth_cluster2_1	59.9	5.7e-17	N/A	Retron
Pfam	UHGV-0212468_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212468_26	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0212468_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0212468_27	K07729	45.0	0.000000000002	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0212468_27	phrog_3	43.7	0.000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0212468_27	UniRef90_UPI00195F9AA7	55.5	0.00000000925	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0212468_27	1122915.AUGY01000087_gene5242	50.4	0.000000158	transcriptional	N/A
PADLOC	UHGV-0212468_27	retron_type_VI_hth_cluster2_1	42.1	0.000000000027	N/A	Retron
Pfam	UHGV-0212468_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212468_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0212468_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_29	phrog_2324	93.9	1.1e-27	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_29	UniRef90_A0A366DNY1	71.2	0.0000000000111	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0212468_29	1399942.U3PCT3_9CAUD	69.7	0.00000000000637	N/A	N/A
Pfam	UHGV-0212468_29	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0212468_29	PF04404	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212468_30	PF19157	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_31	phrog_6244	107.9	8.1e-32	N/A	unknown function
eggNOG-mapper	UHGV-0212468_31	1399942.U3PIX9_9CAUD	91.3	1.42e-22	N/A	N/A
structural_annotation	UHGV-0212468_31	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_32	phrog_298	72.6	3.7e-21	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_32	UniRef90_A0A843HPP6	159.0	0	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0212468_32	1399942.U3PDT7_9CAUD	216.0	0	nuclease activity	N/A
structural_annotation	UHGV-0212468_32	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
KOfam	UHGV-0212468_33	K03111	119.6	3.9e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0212468_33	phrog_44	135.3	3.9e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_33	UniRef90_A0A3E3DZV8	127.0	6.98e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0212468_33	1235796.C815_00133	121.0	3.01e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0212468_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0212468_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0212468_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0212468_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0212468_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_34	phrog_72	60.6	2.8e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212468_34	626523.GCWU000342_01037	74.7	0.00000000000000971	N/A	N/A
structural_annotation	UHGV-0212468_34	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_35	phrog_7566	71.6	7.8e-21	N/A	unknown function
UniRef90	UHGV-0212468_35	UniRef90_A0A7X5CEC2	61.6	0.000000000323	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0212468_35	693746.OBV_24070	50.1	0.00000233	N/A	N/A
PHROG	UHGV-0212468_36	phrog_190	136.2	1.8e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_36	UniRef90_A0A7X9CKX4	123.0	1.33e-33	N/A	N/A
eggNOG-mapper	UHGV-0212468_36	525255.HMPREF0077_0413	119.0	4.18e-33	N/A	N/A
Pfam	UHGV-0212468_36	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0212468_36	PF06356,MF_00130,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0212468_37	phrog_314	91.3	1e-27	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_37	UniRef90_U3PCR9	103.0	7.88e-25	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0212468_37	1399942.U3PCR9_9CAUD	103.0	1.32e-25	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0212468_37	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-0212468_37	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
PHROG	UHGV-0212468_38	phrog_678	93.2	4.2e-27	replication initiation O-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212468_38	UniRef90_F7V9D5	172.0	0	Putative DNA replication protein	N/A
eggNOG-mapper	UHGV-0212468_38	1217705.F900_01898	67.4	0.000000000408	N/A	N/A
structural_annotation	UHGV-0212468_38	TIGR01714	N/A	N/A	N/A	N/A