UHGV-0212512 (vOTU-075580)

Viral Genome: UHGV-0212512

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212512
vOTU ID	vOTU-075580
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252286_a1_ct21496_vs1@Myoviridae__sp._ctvwd1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.38
Jumbo phage	No

Genome content
Genome length (bp)	38,388
GC content	59.10%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	94%
Average CDS length (bps)	682.36
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0212512_1	phrog_16490	115.9	3.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-0212512_1	1408437.JNJN01000043_gene803	143.0	1.4e-39	N/A	N/A
eggNOG-mapper	UHGV-0212512_3	445972.ANACOL_01878	52.8	0.000000711	N/A	N/A
UniRef90	UHGV-0212512_4	UniRef90_A0A1C6JAI6	67.0	0.000000000000864	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0212512_4	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_5	phrog_881	67.3	1.6e-19	holin	lysis
UniRef90	UHGV-0212512_5	UniRef90_A0A8D9PDR9	79.0	6.76e-18	Holin	N/A
eggNOG-mapper	UHGV-0212512_5	476272.RUMHYD_01966	75.1	4.09e-17	Putative phage holin Dp-1	N/A
Pfam	UHGV-0212512_5	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0212512_5	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_6	phrog_937	50.0	0.000000000000053	hemolysin	other
eggNOG-mapper	UHGV-0212512_6	1297617.JPJD01000099_gene2176	85.5	1.54e-20	N/A	N/A
PHROG	UHGV-0212512_7	phrog_20388	82.1	5e-24	endolysin	lysis
eggNOG-mapper	UHGV-0212512_7	43759.JNWK01000061_gene2620	63.9	0.00000000541	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0212512_7	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0212512_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0212512_7	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0212512_7	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_8	phrog_30034	91.6	1.1e-26	N/A	unknown function
UniRef90	UHGV-0212512_8	UniRef90_A0A2Y9CAD1	141.0	8.85004e-41	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0212512_8	411460.RUMTOR_02099	115.0	6.19e-30	N/A	N/A
Pfam	UHGV-0212512_8	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0212512_10	PF03425,NF038128,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212512_11	1519439.JPJG01000060_gene1892	95.5	2.95e-18	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0212512_11	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0212512_11	PF07353,COG3979	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_13	phrog_511	232.3	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0212512_13	1410650.JHWL01000003_gene2827	348.0	0	N/A	N/A
structural_annotation	UHGV-0212512_13	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_14	phrog_12105	91.2	9.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0212512_14	1226322.HMPREF1545_03850	66.6	0.00000000000243	N/A	N/A
PHROG	UHGV-0212512_15	phrog_15239	60.0	2.9e-17	N/A	unknown function
PHROG	UHGV-0212512_16	phrog_1357	220.0	0	major head protein	head and packaging
UniRef90	UHGV-0212512_16	UniRef90_A0A3C0NPN1	538.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0212512_16	1410650.JHWL01000003_gene2830	246.0	0	N/A	N/A
Pfam	UHGV-0212512_16	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0212512_16	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0212512_16	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_17	phrog_13908	167.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0212512_17	748224.HMPREF9436_01398	58.9	0.00000093	Cysteine protease Prp	N/A
COG	UHGV-0212512_17	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_18	phrog_22978	575.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0212512_18	1410650.JHWL01000003_gene2814	345.0	0	N/A	N/A
Pfam	UHGV-0212512_18	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0212512_19	1410650.JHWL01000003_gene2815	125.0	1.95e-29	N/A	N/A
KOfam	UHGV-0212512_20	K07584	53.6	0.0000000000000047	N/A	N/A
PHROG	UHGV-0212512_20	phrog_4478	51.9	0.00000000000001	peptidase	other
UniRef90	UHGV-0212512_20	UniRef90_R5J236	75.1	0.00000000000000379	Putative ribosomal protein	N/A
Pfam	UHGV-0212512_20	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0212512_20	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212512_20	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_21	phrog_156	288.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0212512_21	1410650.JHWL01000003_gene2833	476.0	0	N/A	N/A
structural_annotation	UHGV-0212512_21	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_22	K06909	143.0	2.59941e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0212512_22	phrog_979	144.4	3.78351e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0212512_22	UniRef90_A0A3C0NMI6	686.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0212512_22	1410650.JHWL01000003_gene2834	566.0	0	N/A	N/A
Pfam	UHGV-0212512_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0212512_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0212512_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_23	K07474	92.9	7e-27	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0212512_23	phrog_51	98.4	7.2e-29	terminase small subunit	head and packaging
UniRef90	UHGV-0212512_23	UniRef90_A0A084JIB8	97.4	1.59e-23	Terminase	N/A
eggNOG-mapper	UHGV-0212512_23	318464.IO99_00540	97.4	2.66e-24	Terminase small subunit	N/A
Pfam	UHGV-0212512_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0212512_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0212512_23	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_26	K07726	43.2	0.0000000000066	K07726; putative transcriptional regulator	N/A
UniRef90	UHGV-0212512_26	UniRef90_X8K268	57.8	0.00000000098	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0212512_26	1410631.JHWZ01000002_gene1263	58.9	0.0000000000932	sequence-specific DNA binding	N/A
Pfam	UHGV-0212512_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212512_26	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
PHROG	UHGV-0212512_30	phrog_3584	171.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212512_30	1226322.HMPREF1545_03841	270.0	0	N/A	N/A
structural_annotation	UHGV-0212512_30	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_34	K05925	54.9	1.6e-16	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	N/A
PHROG	UHGV-0212512_34	phrog_359	164.6	0	DNA methyltransferase	other
UniRef90	UHGV-0212512_34	UniRef90_A0A3D5I936	281.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0212512_34	1158601.I585_02810	123.0	8.65e-33	MT-A70	N/A
PADLOC	UHGV-0212512_34	MTase_II_00048	154.5	1.4013e-45	Type II methyltransferase	RM
Pfam	UHGV-0212512_34	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0212512_34	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0212512_34	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_37	K00390	106.2	3.2e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0212512_37	phrog_424	122.2	3.5e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0212512_37	UniRef90_UPI0009E1B041	372.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0212512_37	1408437.JNJN01000032_gene2312	352.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0212512_37	BrxP_00001	65.6	2.4e-20	BrxP	BREX
Pfam	UHGV-0212512_37	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0212512_37	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0212512_37	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0212512_40	phrog_824	160.1	0	N/A	unknown function
UniRef90	UHGV-0212512_40	UniRef90_A0A6N8GXS9	157.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0212512_40	665956.HMPREF1032_00132	134.0	2.14e-38	VRR_NUC	N/A
Pfam	UHGV-0212512_40	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0212512_42	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212512_43	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212512_48	UniRef90_UPI0013DE7A28	122.0	3.65e-33	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212512_48	748224.HMPREF9436_01444	76.3	0.00000000000000119	N/A	N/A
Pfam	UHGV-0212512_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212512_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0212512_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0212512_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0212512_50	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0212512_51	K14059	125.6	6.6e-37	int; integrase	N/A
PHROG	UHGV-0212512_51	phrog_1	132.5	4.1e-39	integrase	integration and excision
UniRef90	UHGV-0212512_51	UniRef90_A0A2Z4QB94	288.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0212512_51	485913.Krac_6641	78.6	0.000000000000311	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0212512_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0212512_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0212512_51	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212512_52	1378168.N510_03079	105.0	3.89e-25	N/A	N/A
eggNOG-mapper	UHGV-0212512_53	1408437.JNJN01000043_gene802	151.0	1.4013e-45	N/A	N/A