UHGV-0212522 (vOTU-060388)

Viral Genome: UHGV-0212522

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212522
vOTU ID	vOTU-060388
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN10080933_a1_ct10365_vs1@linear@Myoviridae__sp._ctyQl1
Associated BioSample	SAMN10080933
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.37 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.88
Jumbo phage	No

Genome content
Genome length (bp)	46,021
GC content	46.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	89%
Average CDS length (bps)	590.87
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0212522_1	phrog_132	43.0	0.0000000000059	head-tail adaptor	connector
UniRef90	UHGV-0212522_1	UniRef90_UPI001898B4B4	79.3	7.17e-17	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0212522_1	1158614.I592_02266	51.2	0.00000122	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0212522_1	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0212522_1	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0212522_1	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_2	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_4	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_5	phrog_158	65.1	1.4e-18	major tail protein	tail
UniRef90	UHGV-0212522_5	UniRef90_D7GNW1	93.2	1.41e-21	Phage tail protein	N/A
eggNOG-mapper	UHGV-0212522_5	1158607.UAU_01767	60.5	0.00000000139	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0212522_5	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212522_6	UniRef90_UPI001D0975F6	79.7	5.48e-17	N/A	N/A
PHROG	UHGV-0212522_8	phrog_1535	76.3	9.5e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0212522_8	397288.C806_01518	77.0	0.0000000000214	Phage-related minor tail protein	N/A
COG	UHGV-0212522_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0212522_9	phrog_1194	41.9	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0212522_9	445972.ANACOL_01864	79.3	2.79e-17	N/A	N/A
structural_annotation	UHGV-0212522_9	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_10	phrog_18190	120.6	2.1e-36	N/A	unknown function
UniRef90	UHGV-0212522_10	UniRef90_UPI001D0767E1	68.2	0.0000000371	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0212522_10	411471.SUBVAR_06932	244.0	0	N/A	N/A
structural_annotation	UHGV-0212522_10	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0212522_13	K21472	62.1	1.1e-17	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0212522_13	phrog_7767	47.1	0.00000000000022	metallo-endopeptidase	other
UniRef90	UHGV-0212522_13	UniRef90_A0A2V2FTH8	286.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0212522_13	665956.HMPREF1032_02928	247.0	0	N/A	N/A
Pfam	UHGV-0212522_13	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0212522_13	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_14	phrog_32509	41.1	0.000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0212522_14	1235813.JCM10003_1400	58.9	0.00000644	Leucine-rich repeat (LRR) protein	N/A
Pfam	UHGV-0212522_14	PF15892	N/A	N/A	BNR repeat-containing family member	BNR_4
COG	UHGV-0212522_14	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
PHROG	UHGV-0212522_15	phrog_1129	40.6	0.000000000033	holin	lysis
UniRef90	UHGV-0212522_15	UniRef90_A0A2N2CPW4	55.8	0.0000000315	Enolase	N/A
eggNOG-mapper	UHGV-0212522_15	1226322.HMPREF1545_00069	51.2	0.000000323	Phage holin family Hol44, in holin superfamily V	N/A
structural_annotation	UHGV-0212522_15	PF06946	N/A	N/A	N/A	N/A
Pfam	UHGV-0212522_19	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0212522_19	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212522_20	1235790.C805_00058	63.9	0.000000000187	N/A	N/A
PHROG	UHGV-0212522_21	phrog_16490	60.6	2.9e-17	N/A	unknown function
structural_annotation	UHGV-0212522_22	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_23	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212522_24	1120956.JHZK01000007_gene2862	51.2	0.00000076	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0212522_24	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0212522_24	PF04606,NF007241	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212522_27	717772.THIAE_06705	49.7	0.00000166	HicB family	N/A
COG	UHGV-0212522_27	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
structural_annotation	UHGV-0212522_27	PF16225,TIGR04550,COG4226	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_28	phrog_8060	53.8	0.0000000000000042	N/A	unknown function
UniRef90	UHGV-0212522_28	UniRef90_UPI000EBBA323	56.6	0.0000000755	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0212522_28	665942.HMPREF1022_00974	55.8	0.000000481	HNH nucleases	N/A
Pfam	UHGV-0212522_28	PF01844	N/A	N/A	HNH endonuclease	HNH
UniRef90	UHGV-0212522_29	UniRef90_UPI001C01DFED	64.7	0.00000000215	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0212522_29	1415775.U729_2491	63.5	0.00000000107	Conserved phage C-terminus (Phg_2220_C)	N/A
COG	UHGV-0212522_29	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
PHROG	UHGV-0212522_32	phrog_298	75.6	1.5e-22	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_32	UniRef90_UPI00058C5410	92.0	1.35e-19	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0212522_32	1218075.BAYA01000003_gene606	81.3	3.05e-16	N/A	N/A
structural_annotation	UHGV-0212522_32	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_34	phrog_374	202.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212522_34	864702.OsccyDRAFT_0687	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-0212522_35	1449126.JQKL01000032_gene1263	118.0	1.76e-29	N/A	N/A
structural_annotation	UHGV-0212522_35	PF04404,TIGR00607,COG5055	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_38	PF00436,MF_00984,NF005242,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_40	phrog_16304	61.2	2.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0212522_40	768706.Desor_0679	78.2	0.00000000000000182	N/A	N/A
KOfam	UHGV-0212522_43	K02314	216.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0212522_43	phrog_19	228.1	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_43	UniRef90_A0A316NVS3	237.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0212522_43	1203606.HMPREF1526_01325	152.0	1.32e-38	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0212522_43	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0212522_43	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0212522_43	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0212522_43	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_44	phrog_244	73.6	3.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_44	UniRef90_A0A841R0Q1	105.0	5.54e-27	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0212522_44	1410650.JHWL01000003_gene2849	105.0	2.22e-27	N/A	N/A
KOfam	UHGV-0212522_48	K09882	118.1	8.3e-35	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0212522_48	phrog_249	174.9	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0212522_48	UniRef90_UPI0006961AD7	266.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0212522_48	402612.FP2177	185.0	0	AAA domain (dynein-related subfamily)	N/A
Pfam	UHGV-0212522_48	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
COG	UHGV-0212522_48	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-0212522_48	PF07728,MF_03121,TIGR02640,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_49	phrog_1909	108.7	4.5e-32	N/A	unknown function
structural_annotation	UHGV-0212522_49	TIGR01651,COG4547	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_52	PF21662,MF_00683,NF010673	N/A	N/A	N/A	N/A
KOfam	UHGV-0212522_57	K03465	186.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0212522_57	phrog_85	130.9	5e-39	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_57	UniRef90_A0A2A7ALC5	237.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0212522_57	657322.FPR_23400	219.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0212522_57	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0212522_57	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0212522_57	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-0212522_57	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0212522_57	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_58	phrog_236	82.4	1e-23	nucleotide kinase	other
UniRef90	UHGV-0212522_58	UniRef90_A0A7Y4YH51	88.2	1.59e-20	N/A	N/A
eggNOG-mapper	UHGV-0212522_58	397290.C810_01372	63.5	0.0000000000139	N/A	N/A
Pfam	UHGV-0212522_58	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0212522_60	K01520	139.0	3.80004e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0212522_60	phrog_135	124.3	6.9e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_60	UniRef90_A0A6A2VG41	171.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0212522_60	1282887.AUJG01000016_gene1113	148.0	7.69313e-43	N/A	N/A
Pfam	UHGV-0212522_60	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0212522_60	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0212522_60	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0212522_60	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_63	PF17613,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_64	phrog_11233	118.7	4.3e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212522_64	UniRef90_UPI00083559E8	89.0	2.66e-16	N/A	N/A
eggNOG-mapper	UHGV-0212522_64	1298920.KI911353_gene2714	129.0	9.74e-33	DnaD domain protein	N/A
COG	UHGV-0212522_64	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0212522_64	PF13463,MF_01909,NF040642,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_65	phrog_38	184.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0212522_65	UniRef90_UPI00164E3A67	432.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0212522_65	1298920.KI911353_gene2682	280.0	0	TIGRFAM Phage	N/A
COG	UHGV-0212522_65	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212522_65	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_67	phrog_64	188.4	0	portal protein	head and packaging
UniRef90	UHGV-0212522_67	UniRef90_UPI001D06C00B	377.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0212522_67	1121866.AUGK01000003_gene1429	324.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0212522_67	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0212522_67	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0212522_69	phrog_247	207.4	0	major head protein	head and packaging
UniRef90	UHGV-0212522_69	UniRef90_UPI001BA5448B	207.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0212522_69	33035.JPJF01000106_gene3132	253.0	0	N/A	N/A
structural_annotation	UHGV-0212522_69	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A