UHGV-0212732 (vOTU-143291)

Viral Genome: UHGV-0212732

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212732
vOTU ID	vOTU-143291
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252274_a1_ct69738_vs1@Siphoviridae__sp._ctXgK1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.57 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.34
Jumbo phage	No

Genome content
Genome length (bp)	34,793
GC content	52.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	92%
Average CDS length (bps)	574.13
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0212732_1	UniRef90_A0A3D4VZ42	58.5	0.000000000243	Endolysin (Fragment)	N/A
eggNOG-mapper	UHGV-0212732_1	411483.FAEPRAA2165_00002	58.5	0.000000000562	hydrolase, family 25	N/A
COG	UHGV-0212732_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0212732_2	phrog_28673	149.1	2.8026e-44	tail protein	tail
eggNOG-mapper	UHGV-0212732_2	1540090.A0A0A0RS40_9CAUD	146.0	8.33e-34	N/A	N/A
PHROG	UHGV-0212732_4	phrog_1067	172.7	0	minor head protein	head and packaging
UniRef90	UHGV-0212732_4	UniRef90_A0A2A7AM44	708.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_4	1123263.AUKY01000068_gene489	187.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0212732_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0212732_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0212732_4	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0212732_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_5	phrog_33	78.9	1.1e-22	distal tail protein Dit	tail
UniRef90	UHGV-0212732_5	UniRef90_A0A173Z1X4	144.0	4.9e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0212732_5	908340.HMPREF9406_2569	95.1	6.44e-21	phage tail	N/A
NCBIFam	UHGV-0212732_5	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0212732_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0212732_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_6	phrog_9959	98.9	9.8e-30	tail length tape measure protein	tail
UniRef90	UHGV-0212732_6	UniRef90_A0A2A7ALS3	657.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_6	596328.HMPREF0578_1241	191.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0212732_6	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0212732_6	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0212732_6	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0212732_6	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_9	phrog_88	94.0	1.5e-27	major tail protein	tail
UniRef90	UHGV-0212732_9	UniRef90_G9YSC5	113.0	5.19e-28	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0212732_9	349161.Dred_2600	69.3	0.0000000000157	N/A	N/A
NCBIFam	UHGV-0212732_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0212732_9	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_10	phrog_5	47.7	0.00000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0212732_10	UniRef90_A0A1C6FG30	116.0	6.87e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0212732_10	908340.HMPREF9406_2573	109.0	3.52e-28	N/A	N/A
structural_annotation	UHGV-0212732_10	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212732_11	999413.HMPREF1094_02005	66.2	0.00000000000114	N/A	N/A
structural_annotation	UHGV-0212732_11	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_12	phrog_19734	94.9	7.6e-28	N/A	unknown function
UniRef90	UHGV-0212732_12	UniRef90_A0A0D8I708	80.1	9.41e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0212732_12	349161.Dred_2602	75.1	0.00000000000000138	N/A	N/A
structural_annotation	UHGV-0212732_12	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_13	phrog_749	58.2	1.3e-16	N/A	unknown function
UniRef90	UHGV-0212732_13	UniRef90_UPI00099504CB	51.6	0.00000289	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0212732_13	1211817.CCAT010000053_gene2133	65.1	0.0000000000028	N/A	N/A
PHROG	UHGV-0212732_14	phrog_10	155.9	0	major head protein	head and packaging
UniRef90	UHGV-0212732_14	UniRef90_A0A2A7B712	630.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0212732_14	1235792.C808_00086	445.0	0	Phage capsid family	N/A
Pfam	UHGV-0212732_14	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0212732_14	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0212732_14	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0212732_14	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0212732_14	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0212732_15	K01358	91.1	1.5e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0212732_15	phrog_94	134.9	8.5e-40	head maturation protease	head and packaging
UniRef90	UHGV-0212732_15	UniRef90_UPI001C10F40E	161.0	2.8026e-45	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0212732_15	1121866.AUGK01000006_gene879	151.0	1.2906e-42	Clp protease	N/A
Pfam	UHGV-0212732_15	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0212732_15	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0212732_15	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_16	phrog_12	110.3	1.4e-32	portal protein	head and packaging
UniRef90	UHGV-0212732_16	UniRef90_A0A2A7B6S8	466.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0212732_16	349161.Dred_2606	250.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0212732_16	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0212732_16	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0212732_16	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0212732_16	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_17	phrog_9	242.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0212732_17	UniRef90_A0A2A7ALT4	1059.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0212732_17	610130.Closa_0741	634.0	0	Phage Terminase	N/A
Pfam	UHGV-0212732_17	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0212732_17	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0212732_17	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_18	phrog_13845	53.7	0.0000000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0212732_18	1399942.U3PDR2_9CAUD	64.7	0.00000000000897	N/A	N/A
structural_annotation	UHGV-0212732_18	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_19	phrog_119	56.6	3.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212732_19	UniRef90_A0A2A7B6I3	231.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_19	768710.DesyoDRAFT_1275	104.0	2.33e-27	HNH nucleases	N/A
Pfam	UHGV-0212732_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0212732_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0212732_26	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0212732_27	K03497	88.0	1.8e-25	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0212732_27	phrog_4715	119.7	2.4e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212732_27	UniRef90_A0A2A7AMC5	293.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_27	411471.SUBVAR_05842	177.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0212732_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0212732_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0212732_27	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212732_28	UniRef90_A0A845R8R0	113.0	2e-29	N/A	N/A
KOfam	UHGV-0212732_29	K03496	203.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0212732_29	phrog_164	150.5	1.12104e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212732_29	UniRef90_A0A2A7B6H3	356.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_29	411471.SUBVAR_05839	229.0	0	AAA domain	N/A
Pfam	UHGV-0212732_29	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0212732_29	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0212732_29	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_31	phrog_6969	52.1	0.0000000000000072	N/A	unknown function
eggNOG-mapper	UHGV-0212732_31	748224.HMPREF9436_00735	152.0	9.68017e-42	N/A	N/A
Pfam	UHGV-0212732_31	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0212732_31	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0212732_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0212732_31	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0212732_32	K03111	150.5	1.54143e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0212732_32	phrog_44	150.7	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212732_32	UniRef90_D4K451	212.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0212732_32	748224.HMPREF9436_00638	214.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0212732_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0212732_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0212732_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0212732_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0212732_32	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_33	phrog_7566	83.6	1.6e-24	N/A	unknown function
eggNOG-mapper	UHGV-0212732_33	411471.SUBVAR_05830	101.0	1.24e-26	N/A	N/A
PHROG	UHGV-0212732_36	phrog_72	48.8	0.00000000000013	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0212732_36	411471.SUBVAR_05829	136.0	4.16e-38	N/A	N/A
structural_annotation	UHGV-0212732_36	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_37	phrog_14970	46.7	0.00000000000059	N/A	unknown function
COG	UHGV-0212732_37	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0212732_37	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0212732_42	PF12773	N/A	N/A	Double zinc ribbon	DZR
UniRef90	UHGV-0212732_45	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0212732_45	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0212732_46	phrog_8	42.4	0.000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212732_46	UniRef90_UPI001E54DE4F	88.6	9.25e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_46	1378168.N510_01712	70.1	0.000000000000451	N/A	N/A
Pfam	UHGV-0212732_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0212732_46	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0212732_52	K07729	40.0	0.000000000042	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0212732_52	phrog_1373	43.0	0.0000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0212732_52	UniRef90_A0A2A7AM70	191.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0212732_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212732_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0212732_52	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0212732_53	K14059	186.4	0	int; integrase	N/A
PHROG	UHGV-0212732_53	phrog_1	168.2	0	integrase	integration and excision
UniRef90	UHGV-0212732_53	UniRef90_A0A367GI93	223.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0212732_53	1507.HMPREF0262_00307	161.0	2.53635e-43	Phage integrase family	N/A
Pfam	UHGV-0212732_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0212732_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0212732_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212732_54	1408437.JNJN01000043_gene801	95.9	8.84e-22	N/A	N/A
eggNOG-mapper	UHGV-0212732_55	658655.HMPREF0988_00916	120.0	3.02e-33	N/A	N/A
PHROG	UHGV-0212732_56	phrog_16490	61.9	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0212732_56	1226322.HMPREF1545_00076	100.0	3.69e-25	N/A	N/A