UHGV-0212910 (vOTU-071269)

Viral Genome: UHGV-0212910

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0212910
vOTU ID	vOTU-071269
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781788_a1_ct149200_vs1@Siphoviridae__sp._ct6nz1
Associated BioSample	SAMN09781788
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.65
Jumbo phage	No

Genome content
Genome length (bp)	41,067
GC content	56.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	95%
Average CDS length (bps)	562.96
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0212910_1	K07319	103.7	1.9e-30	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0212910_1	phrog_498	240.9	0	DNA methyltransferase	other
UniRef90	UHGV-0212910_1	UniRef90_A0A810Q3Z7	336.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_1	693746.OBV_19980	251.0	0	DNA methylase	N/A
PADLOC	UHGV-0212910_1	MTase_II_00015	119.5	0	Type II methyltransferase	RM
Pfam	UHGV-0212910_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0212910_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0212910_1	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0212910_2	K03497	61.9	1.6e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0212910_2	phrog_498	179.5	0	DNA methyltransferase	other
UniRef90	UHGV-0212910_2	UniRef90_A0A810PZK9	250.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_2	1211035.CD30_13045	163.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0212910_2	MTase_II_00015	130.3	2.4e-38	Type II methyltransferase	RM
Pfam	UHGV-0212910_2	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0212910_2	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0212910_2	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212910_3	445972.ANACOL_01835	48.5	0.00000318	N/A	N/A
structural_annotation	UHGV-0212910_3	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
COG	UHGV-0212910_5	COG1773	N/A	N/A	Flavorubredoxin	N/A
Pfam	UHGV-0212910_10	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-0212910_14	phrog_474	50.8	0.000000000000042	phosphofructokinase	other
eggNOG-mapper	UHGV-0212910_14	428125.CLOLEP_01367	55.8	0.0000000165	N/A	N/A
Pfam	UHGV-0212910_14	PF19905	N/A	N/A	N/A	DUF6378
dbAPIS	UHGV-0212910_16	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
COG	UHGV-0212910_16	COG5352	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212910_16	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212910_17	431943.CKL_4022	49.3	0.00000618	N/A	N/A
Pfam	UHGV-0212910_17	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
Pfam	UHGV-0212910_17	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
KOfam	UHGV-0212910_20	K03111	140.1	2.29995e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0212910_20	phrog_44	142.5	2.40042e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212910_20	UniRef90_R6TSJ9	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0212910_20	693746.OBV_19910	130.0	3.98e-37	Single-strand binding protein family	N/A
Pfam	UHGV-0212910_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0212910_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0212910_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0212910_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0212910_20	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_21	phrog_2562	108.3	6.7e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212910_21	UniRef90_A0A374US31	160.0	1.58347e-43	N/A	N/A
eggNOG-mapper	UHGV-0212910_21	1507.HMPREF0262_00435	132.0	2.7e-33	N/A	N/A
Pfam	UHGV-0212910_21	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0212910_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0212910_21	PF14297	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_22	phrog_5702	58.9	4.4e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212910_22	UniRef90_A0A374N329	98.2	2.38e-24	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_22	1589270.A0A0B5A5Y0_9CAUD	85.5	4.12e-20	hydrolase activity, acting on ester bonds	N/A
Pfam	UHGV-0212910_22	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0212910_22	PF03838,MF_00130,NF002585,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_23	phrog_23155	176.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0212910_23	935948.KE386495_gene1346	138.0	4.53e-37	N/A	N/A
PHROG	UHGV-0212910_24	phrog_434	183.4	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0212910_24	UniRef90_A0A1W1VQZ3	170.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0212910_24	428125.CLOLEP_01823	166.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0212910_24	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0212910_24	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0212910_24	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0212910_26	phrog_24518	67.6	1.7e-19	N/A	unknown function
PHROG	UHGV-0212910_31	phrog_15742	41.8	0.00000000002	N/A	unknown function
eggNOG-mapper	UHGV-0212910_31	1378168.N510_02487	143.0	1.76e-40	N/A	N/A
KOfam	UHGV-0212910_32	K22300	50.6	0.00000000000004	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0212910_32	phrog_4	45.8	0.0000000000013	transcriptional repressor	transcription regulation
UniRef90	UHGV-0212910_32	UniRef90_UPI001031C93D	77.8	0.00000000000000104	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_32	665956.HMPREF1032_00149	64.3	0.000000000118	N/A	N/A
Pfam	UHGV-0212910_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0212910_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0212910_32	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
Pfam	UHGV-0212910_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
UniRef90	UHGV-0212910_35	UniRef90_UPI000C8453B5	78.2	0.000000000000118	FxLYD domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_35	877415.JNJQ01000019_gene1779	136.0	1.87e-36	N/A	N/A
NCBIFam	UHGV-0212910_35	NF038353.1	N/A	N/A	FxLYD domain-containing protein	N/A
structural_annotation	UHGV-0212910_35	PF09624,PF12690,NF038353,COG5633	N/A	N/A	N/A	N/A
KOfam	UHGV-0212910_36	K06400	350.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0212910_36	phrog_95	355.9	0	integrase	integration and excision
UniRef90	UHGV-0212910_36	UniRef90_B0P5W1	451.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0212910_36	445972.ANACOL_00133	451.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0212910_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0212910_36	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0212910_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0212910_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0212910_36	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_37	phrog_4709	97.3	6.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0212910_37	1341157.RF007C_02660	92.4	9.25e-24	N/A	N/A
AcrCatalog	UHGV-0212910_37	cluster_3300	97.4	2.99e-30	NA	N/A
UniRef90	UHGV-0212910_38	UniRef90_A0A1Q9JGI6	132.0	5.75e-37	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_38	1118055.CAGU01000028_gene99	108.0	2.49e-28	N/A	N/A
structural_annotation	UHGV-0212910_38	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0212910_43	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0212910_46	UniRef90_A0A843IZ65	68.2	0.000000000000136	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0212910_46	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_47	phrog_6918	56.9	2.9e-16	holin	lysis
eggNOG-mapper	UHGV-0212910_47	1519439.JPJG01000059_gene1950	52.0	0.000000417	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0212910_47	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0212910_47	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0212910_48	K07273	165.0	0	acm; lysozyme	N/A
PHROG	UHGV-0212910_48	phrog_291	140.2	1.79997e-41	endolysin	lysis
UniRef90	UHGV-0212910_48	UniRef90_A0A1C6ACC3	164.0	1.4013e-45	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0212910_48	999411.HMPREF1092_03301	129.0	1.26e-32	family 25	N/A
Pfam	UHGV-0212910_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0212910_48	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0212910_48	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_50	phrog_1419	59.0	3.5e-17	tail protein	tail
eggNOG-mapper	UHGV-0212910_50	1519439.JPJG01000060_gene1892	82.0	0.000000000000435	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0212910_50	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0212910_51	phrog_9428	158.9	0	N/A	unknown function
UniRef90	UHGV-0212910_51	UniRef90_A0A7X5DY06	134.0	1.71e-38	Serine/threonine protein kinase	N/A
eggNOG-mapper	UHGV-0212910_51	552398.HMPREF0866_01584	159.0	0	N/A	N/A
PHROG	UHGV-0212910_52	phrog_18593	125.9	2.4e-37	N/A	unknown function
UniRef90	UHGV-0212910_52	UniRef90_A0A2Y9CAD1	166.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0212910_52	411460.RUMTOR_02099	135.0	1.42e-37	N/A	N/A
Pfam	UHGV-0212910_52	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0212910_54	phrog_2295	74.5	1.3e-21	N/A	unknown function
Pfam	UHGV-0212910_54	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0212910_54	PF12810,PF20944	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_55	phrog_18725	63.9	2.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0212910_55	1226322.HMPREF1545_00062	80.5	1.15e-16	N/A	N/A
PHROG	UHGV-0212910_56	phrog_13879	384.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0212910_56	1235797.C816_02659	450.0	0	N/A	N/A
structural_annotation	UHGV-0212910_56	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212910_57	1235797.C816_02660	109.0	2.91e-29	N/A	N/A
structural_annotation	UHGV-0212910_57	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_58	phrog_58	211.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0212910_58	UniRef90_A0A316QKN8	290.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0212910_58	1089553.Tph_c23060	253.0	0	lysine exporter protein (LysE YggA)	N/A
COG	UHGV-0212910_58	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0212910_58	PF20155,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212910_59	662755.CRES_0875	65.9	0.00000000000595	N/A	N/A
structural_annotation	UHGV-0212910_59	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_60	phrog_88	104.9	4.7e-31	major tail protein	tail
UniRef90	UHGV-0212910_60	UniRef90_UPI0018771F27	270.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0212910_60	349161.Dred_2600	100.0	2.67e-23	N/A	N/A
NCBIFam	UHGV-0212910_60	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0212910_60	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_61	phrog_5	46.2	0.00000000000086	tail completion or Neck1 protein	connector
UniRef90	UHGV-0212910_61	UniRef90_A0A1C6FG30	132.0	2.96e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0212910_61	908340.HMPREF9406_2573	111.0	5.84e-29	N/A	N/A
structural_annotation	UHGV-0212910_61	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0212910_62	1235798.C817_04588	94.7	8.87e-24	N/A	N/A
structural_annotation	UHGV-0212910_62	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_63	phrog_19734	114.6	5.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0212910_63	1235798.C817_04587	68.2	0.000000000000464	N/A	N/A
structural_annotation	UHGV-0212910_63	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_64	phrog_749	68.2	9.4e-20	N/A	unknown function
UniRef90	UHGV-0212910_64	UniRef90_UPI001030B17C	64.3	0.0000000000281	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0212910_64	1415774.U728_1251	70.9	0.0000000000000178	N/A	N/A
PHROG	UHGV-0212910_65	phrog_10	133.4	1.3e-39	major head protein	head and packaging
UniRef90	UHGV-0212910_65	UniRef90_A0A1Y4BVI1	523.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0212910_65	1235792.C808_00086	436.0	0	Phage capsid family	N/A
Pfam	UHGV-0212910_65	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0212910_65	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0212910_65	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0212910_65	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0212910_65	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0212910_66	K01358	124.0	1.6e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0212910_66	phrog_94	232.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0212910_66	UniRef90_A0A1C6FFN6	294.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0212910_66	349161.Dred_2605	250.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0212910_66	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0212910_66	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0212910_66	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_67	phrog_12	124.3	2.4e-37	portal protein	head and packaging
UniRef90	UHGV-0212910_67	UniRef90_G9YSB8	393.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0212910_67	610130.Closa_0742	263.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0212910_67	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0212910_67	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0212910_67	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0212910_67	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_68	phrog_9	324.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0212910_68	UniRef90_A0A7C7DBW7	639.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0212910_68	349161.Dred_2607	621.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0212910_68	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0212910_68	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0212910_68	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0212910_68	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0212910_69	phrog_13845	96.7	1.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0212910_69	1399942.U3PDR2_9CAUD	96.3	6.97e-24	N/A	N/A
Pfam	UHGV-0212910_69	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0212910_69	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A