UHGV-0213028 (vOTU-048972)

Viral Genome: UHGV-0213028

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0213028
vOTU ID	vOTU-048972
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031336_a1_ct348@circular@Siphoviridae__sp._ctwyo348
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.63
Jumbo phage	No

Genome content
Genome length (bp)	42,384
GC content	43.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	72
CDS density	92%
Average CDS length (bps)	541.50
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0213028_1	UniRef90_A0A3C1XLS0	99.4	1.57e-25	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0213028_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0213028_1	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
COG	UHGV-0213028_2	COG1197	N/A	N/A	Transcription-repair coupling factor (superfamily II helicase)	N/A
AcrCatalog	UHGV-0213028_5	cluster_17974	44.3	0.00000000178	NA	N/A
PHROG	UHGV-0213028_6	phrog_36464	53.9	0.0000000000000037	N/A	unknown function
eggNOG-mapper	UHGV-0213028_6	1235790.C805_00019	58.5	0.000000000188	N/A	N/A
structural_annotation	UHGV-0213028_6	PF09035	N/A	N/A	N/A	N/A
KOfam	UHGV-0213028_8	K15352	119.8	1.3e-35	pipB2; secreted effector protein PipB2	N/A
PHROG	UHGV-0213028_8	phrog_9562	106.4	4.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0213028_8	1235799.C818_02570	139.0	1.3e-37	Pentapeptide repeats (9 copies)	N/A
Pfam	UHGV-0213028_8	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0213028_8	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0213028_8	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213028_8	PF19062,PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_12	phrog_155	114.5	9.9e-34	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213028_12	UniRef90_A0A396QXQ1	347.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0213028_12	525919.Apre_0805	119.0	4.13e-31	ERF superfamily	N/A
Pfam	UHGV-0213028_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0213028_12	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_13	phrog_398	207.6	0	N/A	unknown function
UniRef90	UHGV-0213028_13	UniRef90_UPI00068C968F	315.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0213028_13	33035.JPJF01000122_gene2462	315.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0213028_13	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0213028_13	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_15	phrog_15768	135.9	8.69996e-41	N/A	unknown function
UniRef90	UHGV-0213028_15	UniRef90_UPI000E525AC6	153.0	2.95674e-43	N/A	N/A
eggNOG-mapper	UHGV-0213028_15	33035.JPJF01000071_gene4467	92.0	7.84e-20	N/A	N/A
AcrCatalog	UHGV-0213028_15	cluster_38323	112.0	1.85e-32	NA	N/A
Pfam	UHGV-0213028_15	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0213028_15	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_16	phrog_9804	160.3	0	N/A	unknown function
UniRef90	UHGV-0213028_16	UniRef90_A0A412RQW3	196.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0213028_16	1410650.JHWL01000003_gene2847	151.0	2.52234e-44	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0213028_16	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0213028_16	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213028_17	PF17399	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_24	phrog_874	49.9	0.000000000000064	N/A	unknown function
eggNOG-mapper	UHGV-0213028_24	598467.BrE312_2432	48.5	0.00000233	N/A	N/A
PHROG	UHGV-0213028_25	phrog_16351	42.1	0.00000000001	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213028_26	UniRef90_A0A371ATI3	53.1	0.00000343	N/A	N/A
structural_annotation	UHGV-0213028_26	PF21627	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_29	phrog_419	110.8	1.3e-32	N/A	unknown function
UniRef90	UHGV-0213028_29	UniRef90_A0A0Y3MTG9	90.9	1.4e-21	Prophage Lp2 protein 33	N/A
eggNOG-mapper	UHGV-0213028_29	1444310.JANV01000162_gene1177	94.0	1.4e-23	N/A	N/A
PHROG	UHGV-0213028_31	phrog_2245	85.3	7.4e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0213028_31	UniRef90_A0A415TAK8	67.0	0.00000000000955	N/A	N/A
eggNOG-mapper	UHGV-0213028_31	1499683.CCFF01000017_gene2593	52.4	0.000000126	N/A	N/A
structural_annotation	UHGV-0213028_31	PF10400,MF_01019,NF010671,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_32	phrog_6568	51.5	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0213028_33	411459.RUMOBE_01385	79.3	5.18e-18	N/A	N/A
PHROG	UHGV-0213028_34	phrog_309	144.5	2.70451e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0213028_34	UniRef90_UPI000BA2D812	171.0	0	transposase	N/A
eggNOG-mapper	UHGV-0213028_34	1121091.AUMP01000003_gene2580	147.0	4.06377e-44	transposase activity	N/A
Pfam	UHGV-0213028_34	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0213028_34	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0213028_34	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0213028_35	K06909	354.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0213028_35	phrog_3717	161.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213028_35	UniRef90_R6RP56	748.0	0	Phage terminase large subunit pbsx family	N/A
eggNOG-mapper	UHGV-0213028_35	33035.JPJF01000106_gene3136	415.0	0	Terminase small subunit	N/A
Pfam	UHGV-0213028_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0213028_35	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0213028_35	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0213028_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0213028_35	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_37	phrog_533	288.7	0	portal protein	head and packaging
UniRef90	UHGV-0213028_37	UniRef90_A0A1C6CDM8	642.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0213028_37	33035.JPJF01000106_gene3135	540.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0213028_37	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_38	phrog_581	272.2	0	minor head protein	head and packaging
UniRef90	UHGV-0213028_38	UniRef90_A0A1C6CDG2	612.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0213028_38	33035.JPJF01000106_gene3134	445.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0213028_38	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0213028_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213028_38	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_40	phrog_194	72.8	5.7e-21	head scaffolding protein	head and packaging
UniRef90	UHGV-0213028_40	UniRef90_UPI001D14C9C8	277.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0213028_40	476272.RUMHYD_01775	183.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0213028_40	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0213028_41	phrog_544	154.3	1.4013e-45	major head protein	head and packaging
UniRef90	UHGV-0213028_41	UniRef90_A0A173R8P5	655.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213028_41	1232453.BAIF02000011_gene3359	404.0	0	N/A	N/A
Pfam	UHGV-0213028_41	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0213028_41	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_42	phrog_541	91.8	3.2e-27	head-tail adaptor	connector
eggNOG-mapper	UHGV-0213028_42	476272.RUMHYD_01778	118.0	1.37e-31	N/A	N/A
PHROG	UHGV-0213028_43	phrog_1233	95.5	5.5e-28	N/A	unknown function
UniRef90	UHGV-0213028_43	UniRef90_UPI001C39EFB9	97.1	1.01e-23	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0213028_43	33035.JPJF01000106_gene3130	108.0	6.19e-29	N/A	N/A
PHROG	UHGV-0213028_44	phrog_3366	103.9	1.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0213028_44	476272.RUMHYD_01779	147.0	2.90069e-43	N/A	N/A
structural_annotation	UHGV-0213028_44	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_45	phrog_556	70.3	9e-21	minor head protein	head and packaging
UniRef90	UHGV-0213028_45	UniRef90_UPI0008B4CFF0	218.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0213028_45	476272.RUMHYD_01780	173.0	0	N/A	N/A
Pfam	UHGV-0213028_45	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0213028_45	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_46	phrog_3266	97.9	6.9e-29	tail completion	connector
eggNOG-mapper	UHGV-0213028_46	476272.RUMHYD_01781	150.0	6.5861e-44	N/A	N/A
structural_annotation	UHGV-0213028_46	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_47	phrog_3099	130.7	9.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0213028_47	411902.CLOBOL_00129	166.0	0	N/A	N/A
structural_annotation	UHGV-0213028_47	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_48	phrog_11299	90.1	2.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0213028_48	33035.JPJF01000106_gene3125	72.0	0.0000000000000378	N/A	N/A
structural_annotation	UHGV-0213028_48	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_49	phrog_706	131.3	6.2e-39	N/A	unknown function
UniRef90	UHGV-0213028_49	UniRef90_A0A1C5M8I2	263.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0213028_49	411459.RUMOBE_01383	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0213028_49	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0213028_49	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_50	phrog_28918	310.9	0	N/A	unknown function
UniRef90	UHGV-0213028_50	UniRef90_A0A1C5P271	282.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0213028_50	411459.RUMOBE_01384	377.0	0	phage tail tape measure protein	N/A
COG	UHGV-0213028_50	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0213028_51	phrog_1194	42.3	0.000000000011	N/A	unknown function
structural_annotation	UHGV-0213028_51	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_52	phrog_6616	644.1	0	tail protein	tail
UniRef90	UHGV-0213028_52	UniRef90_A0A173R8I5	365.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213028_52	33035.JPJF01000043_gene1002	515.0	0	N/A	N/A
structural_annotation	UHGV-0213028_52	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_53	phrog_18444	85.6	3.2e-25	N/A	unknown function
UniRef90	UHGV-0213028_53	UniRef90_D9SPF9	55.8	0.00000000694	Peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0213028_53	1294142.CINTURNW_1707	47.0	0.00000348	N/A	N/A
PHROG	UHGV-0213028_54	phrog_19519	51.5	0.0000000000000054	neck protein	connector
eggNOG-mapper	UHGV-0213028_54	476272.RUMHYD_00002	124.0	2.66e-26	N/A	N/A
PHROG	UHGV-0213028_55	phrog_4105	92.1	4.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0213028_55	97139.C824_05951	160.0	0	N/A	N/A
PHROG	UHGV-0213028_56	phrog_1129	80.2	1.5e-23	holin	lysis
UniRef90	UHGV-0213028_56	UniRef90_A0A396QEU2	176.0	0	Holin	N/A
eggNOG-mapper	UHGV-0213028_56	33035.JPJF01000043_gene995	137.0	4.46005e-41	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0213028_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0213028_56	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_57	phrog_918	94.1	6.1e-28	N/A	unknown function
UniRef90	UHGV-0213028_57	UniRef90_UPI001D092FF5	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213028_57	537007.BLAHAN_05515	152.0	0	N/A	N/A
Pfam	UHGV-0213028_57	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0213028_57	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0213028_58	K07486	166.1	0	K07486; transposase	N/A
PHROG	UHGV-0213028_58	phrog_2199	212.4	0	transposase	integration and excision
UniRef90	UHGV-0213028_58	UniRef90_A0A7G9GAI2	815.0	0	IS110 family transposase	N/A
eggNOG-mapper	UHGV-0213028_58	1235793.C809_03788	712.0	0	Transposase IS116/IS110/IS902 family	N/A
Pfam	UHGV-0213028_58	PF01548	N/A	N/A	Transposase	DEDD_Tnp_IS110
Pfam	UHGV-0213028_58	PF02371	N/A	N/A	Transposase IS116/IS110/IS902 family	Transposase_20
NCBIFam	UHGV-0213028_58	NF033542.1	N/A	N/A	IS110 family transposase	N/A
COG	UHGV-0213028_58	COG3547	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0213028_58	PF01548,PF02371,MF_00651,NF033542,COG3547	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_59	phrog_2649	51.6	1.4e-26	endolysin	lysis
UniRef90	UHGV-0213028_59	UniRef90_A0A7G9GB74	548.0	0	Peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-0213028_59	44060.JODL01000010_gene1575	89.4	7.78e-17	Negative regulator of	N/A
Pfam	UHGV-0213028_59	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0213028_59	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0213028_59	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
PHROG	UHGV-0213028_62	phrog_13890	62.8	3.5e-18	N/A	unknown function
UniRef90	UHGV-0213028_62	UniRef90_A0A3A9BRD5	82.4	5.38e-19	ABC transporter ATP-binding protein	N/A
structural_annotation	UHGV-0213028_62	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_66	phrog_1281	125.7	2.3e-37	N/A	unknown function
UniRef90	UHGV-0213028_66	UniRef90_A0A6L5YUI9	233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213028_66	1123312.KB904580_gene854	184.0	0	N/A	N/A
Pfam	UHGV-0213028_66	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0213028_66	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213028_66	PF13274,COG3600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213028_67	546271.Selsp_2097	61.2	0.000000000958	N/A	N/A
KOfam	UHGV-0213028_68	K14059	174.5	0	int; integrase	N/A
PHROG	UHGV-0213028_68	phrog_1	174.5	0	integrase	integration and excision
UniRef90	UHGV-0213028_68	UniRef90_UPI001D50B3EF	403.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0213028_68	742740.HMPREF9474_03478	362.0	0	DNA integration	N/A
Pfam	UHGV-0213028_68	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0213028_68	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213028_68	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213028_68	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_69	phrog_5783	293.5	0	N/A	unknown function
UniRef90	UHGV-0213028_69	UniRef90_A0A417SXM6	335.0	0	NYN domain-containing protein	N/A
eggNOG-mapper	UHGV-0213028_69	796942.HMPREF9623_01145	310.0	0	NYN domain	N/A
Pfam	UHGV-0213028_69	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0213028_69	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0213028_69	PF01936,TIGR00288,COG1432	N/A	N/A	N/A	N/A
PHROG	UHGV-0213028_71	phrog_7823	96.0	3.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0213028_71	33035.JPJF01000158_gene3562	120.0	5.14e-34	N/A	N/A
KOfam	UHGV-0213028_72	K01356	70.9	2.4e-20	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0213028_72	phrog_4	121.2	1e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0213028_72	UniRef90_A0A174R5M2	320.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213028_72	1235792.C808_03098	174.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0213028_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0213028_72	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0213028_72	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0213028_72	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A