UHGV-0213029 (vOTU-048973)

Viral Genome: UHGV-0213029

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0213029
vOTU ID	vOTU-048973
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031336_a1_ct5032@circular@Siphoviridae__sp._ctxdV032
Associated BioSample	SAMN11031336
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.78
Jumbo phage	No

Genome content
Genome length (bp)	41,584
GC content	41.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	91%
Average CDS length (bps)	565.39
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213029_1	phrog_398	173.6	0	N/A	unknown function
UniRef90	UHGV-0213029_1	UniRef90_UPI00136CF42E	130.0	3.29e-34	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0213029_1	1485543.JMME01000021_gene802	124.0	1.83e-32	Putative HNHc nuclease	N/A
Pfam	UHGV-0213029_1	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0213029_1	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_2	phrog_190	135.1	4.00001e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213029_2	UniRef90_A0A898FYV2	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213029_2	445974.CLORAM_02947	128.0	1.11e-36	N/A	N/A
Pfam	UHGV-0213029_2	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0213029_2	PF06356,MF_04160,NF033179	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_4	K02086	47.7	0.000000000000022	dnaD; DNA replication protein	N/A
PHROG	UHGV-0213029_4	phrog_2514	94.9	5.4e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213029_4	UniRef90_G1VS49	456.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_4	428127.EUBDOL_01245	137.0	1.01e-36	DnaD domain protein	N/A
Pfam	UHGV-0213029_4	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0213029_4	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0213029_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0213029_5	K00390	74.9	1.1e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0213029_5	phrog_424	107.9	7.3e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0213029_5	UniRef90_A0A099I637	592.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_5	1151292.QEW_4547	91.7	2.29e-18	N/A	N/A
Pfam	UHGV-0213029_5	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0213029_5	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0213029_5	PF01507,MF_00063,NF010367,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_6	K00558	163.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0213029_6	phrog_116	166.7	0	DNA methyltransferase	other
UniRef90	UHGV-0213029_6	UniRef90_UPI000E4AD585	649.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0213029_6	1027396.LMOSA_9370	395.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0213029_6	MTase_II_00058	164.4	0	Type II methyltransferase	RM
Pfam	UHGV-0213029_6	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0213029_6	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0213029_6	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0213029_6	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213029_10	1232449.BAHV02000016_gene1829	187.0	0	N/A	N/A
KOfam	UHGV-0213029_11	K03111	148.8	5.04467e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0213029_11	phrog_44	149.6	1.4013e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213029_11	UniRef90_UPI001C384F19	282.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213029_11	658659.HMPREF0983_02345	264.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0213029_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0213029_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0213029_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0213029_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0213029_11	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213029_12	PF18300,MF_00085,NF003076	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213029_13	UniRef90_A0A223MTW1	191.0	0	N/A	N/A
Pfam	UHGV-0213029_13	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0213029_13	PF04448,NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213029_15	UniRef90_A0A6N7S6V3	153.0	2.8026e-45	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0213029_15	PF04545,PF01920,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_18	phrog_1233	89.1	5.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0213029_18	1232449.BAHV02000018_gene1535	140.0	2.17005e-41	N/A	N/A
Pfam	UHGV-0213029_18	PF04450	N/A	N/A	Peptidase of plants and bacteria	BSP
KOfam	UHGV-0213029_19	K07474	87.6	2.7e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0213029_19	phrog_2606	280.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0213029_19	UniRef90_UPI000E4E58D8	563.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0213029_19	428127.EUBDOL_01230	223.0	0	terminase (Small subunit)	N/A
Pfam	UHGV-0213029_19	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0213029_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0213029_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0213029_19	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_20	K06909	66.4	4.6e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0213029_20	phrog_29775	92.7	2.5e-27	N/A	unknown function
UniRef90	UHGV-0213029_20	UniRef90_UPI000E521D30	932.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0213029_20	1151292.QEW_4394	678.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0213029_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0213029_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0213029_20	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_21	phrog_533	256.1	0	portal protein	head and packaging
UniRef90	UHGV-0213029_21	UniRef90_UPI000E474B3E	1010.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0213029_21	1294142.CINTURNW_1024	554.0	0	N/A	N/A
structural_annotation	UHGV-0213029_21	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_22	phrog_581	323.3	0	minor head protein	head and packaging
UniRef90	UHGV-0213029_22	UniRef90_UPI000E51EEC2	1134.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0213029_22	552396.HMPREF0863_01630	790.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0213029_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0213029_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_24	phrog_2303	129.3	3e-38	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0213029_24	585501.HMPREF6123_0836	116.0	8.1e-30	N/A	N/A
PHROG	UHGV-0213029_25	phrog_212	289.1	0	major head protein	head and packaging
UniRef90	UHGV-0213029_25	UniRef90_UPI000E47E686	620.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0213029_25	1262449.CP6013_3199	479.0	0	N/A	N/A
structural_annotation	UHGV-0213029_25	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_26	phrog_15682	59.6	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0213029_26	1395587.P364_0122060	59.3	0.000000000247	N/A	N/A
PHROG	UHGV-0213029_27	phrog_541	83.3	2.4e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0213029_27	552396.HMPREF0863_01637	226.0	0	N/A	N/A
PHROG	UHGV-0213029_28	phrog_8710	130.4	5.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0213029_28	552396.HMPREF0863_01638	208.0	0	N/A	N/A
structural_annotation	UHGV-0213029_28	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_29	phrog_556	67.3	1.9e-19	minor head protein	head and packaging
UniRef90	UHGV-0213029_29	UniRef90_UPI001C3956D2	244.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0213029_29	552396.HMPREF0863_01639	200.0	0	N/A	N/A
PHROG	UHGV-0213029_30	phrog_2595	101.7	5.1e-30	head-tail connector protein	connector
UniRef90	UHGV-0213029_30	UniRef90_UPI001D0A149F	201.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0213029_30	552396.HMPREF0863_01640	239.0	0	N/A	N/A
Pfam	UHGV-0213029_30	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0213029_30	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_31	phrog_820	123.9	8.5e-37	major tail protein	tail
eggNOG-mapper	UHGV-0213029_31	552396.HMPREF0863_01641	208.0	0	domain, Protein	N/A
COG	UHGV-0213029_31	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213029_31	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_32	phrog_8300	120.8	4.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0213029_32	1232449.BAHV02000018_gene1519	103.0	3.88e-27	N/A	N/A
structural_annotation	UHGV-0213029_32	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_33	phrog_8355	126.4	4.9e-38	N/A	unknown function
UniRef90	UHGV-0213029_33	UniRef90_A0A4R3TDU8	115.0	9.19e-32	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0213029_33	552396.HMPREF0863_01643	111.0	7.3e-31	N/A	N/A
PHROG	UHGV-0213029_34	phrog_37487	769.5	0	N/A	unknown function
UniRef90	UHGV-0213029_34	UniRef90_A0A4R3TDI6	755.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0213029_34	552396.HMPREF0863_01644	483.0	0	phage tail tape measure protein	N/A
COG	UHGV-0213029_34	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_35	phrog_1194	63.2	3.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0213029_35	552396.HMPREF0863_01645	181.0	0	N/A	N/A
structural_annotation	UHGV-0213029_35	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_36	phrog_2566	49.3	0.000000000000065	N/A	unknown function
eggNOG-mapper	UHGV-0213029_36	1294142.CINTURNW_1040	51.2	0.000000235	N/A	N/A
PHROG	UHGV-0213029_37	phrog_1401	47.6	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0213029_37	1347392.CCEZ01000045_gene2	51.2	0.00000176	N/A	N/A
structural_annotation	UHGV-0213029_37	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_38	phrog_16267	138.1	0	N/A	unknown function
UniRef90	UHGV-0213029_38	UniRef90_G1VS14	1579.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_38	552396.HMPREF0863_01647	878.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0213029_38	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
COG	UHGV-0213029_38	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0213029_38	PF05113,PF03944,NF033848,NF033675,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_40	phrog_1863	73.7	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0213029_40	1232449.BAHV02000017_gene1511	57.4	0.000000000649	N/A	N/A
UniRef90	UHGV-0213029_41	UniRef90_A0A1C7HSY4	541.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_41	658659.HMPREF0983_03290	355.0	0	lysozyme activity	N/A
Pfam	UHGV-0213029_41	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0213029_41	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0213029_41	PF00877,TIGR02594,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213029_42	UniRef90_UPI001D52BF63	63.5	0.0000000000224	N/A	N/A
eggNOG-mapper	UHGV-0213029_42	521045.Kole_1291	49.7	0.00000105	N/A	N/A
Pfam	UHGV-0213029_42	PF11950	N/A	N/A	N/A	DUF3467
structural_annotation	UHGV-0213029_43	PF18812,COG2929	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_44	phrog_36767	47.8	0.00000000000019	N/A	unknown function
UniRef90	UHGV-0213029_44	UniRef90_A0A7X9H1B7	55.5	0.0000000279	N/A	N/A
Pfam	UHGV-0213029_44	PF10049	N/A	N/A	N/A	DUF2283
structural_annotation	UHGV-0213029_44	PF10049,COG5428	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_45	K14059	220.0	0	int; integrase	N/A
PHROG	UHGV-0213029_45	phrog_1	198.4	0	integrase	integration and excision
UniRef90	UHGV-0213029_45	UniRef90_UPI0018AA7879	451.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0213029_45	908340.HMPREF9406_2610	309.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0213029_45	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0213029_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213029_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213029_45	PF00589,PF13102,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_46	phrog_9418	135.2	2.29999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0213029_46	411462.DORLON_00822	157.0	0	N/A	N/A
structural_annotation	UHGV-0213029_46	PF10233	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_48	K18830	65.2	1.4e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0213029_48	phrog_8	56.6	5.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213029_48	UniRef90_UPI001E5FEC8A	239.0	0	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213029_48	999413.HMPREF1094_02044	125.0	2.14e-35	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0213029_48	retron_type_VI_hth_cluster2_1	48.2	8.1e-16	N/A	Retron
Pfam	UHGV-0213029_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213029_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213029_48	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0213029_51	K07741	218.8	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0213029_51	phrog_63	167.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0213029_51	UniRef90_UPI000E49576D	419.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_51	1123263.AUKY01000076_gene1778	316.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0213029_51	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0213029_51	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0213029_51	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0213029_51	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213029_58	PF01402,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_60	phrog_463	206.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0213029_60	UniRef90_UPI001C37F8EE	470.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213029_60	1160721.RBI_II00603	149.0	2.83006e-41	BRO family, N-terminal domain	N/A
Pfam	UHGV-0213029_60	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0213029_60	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0213029_60	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0213029_60	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_65	phrog_2872	200.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213029_65	UniRef90_UPI000C06E88C	317.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0213029_65	1304866.K413DRAFT_0827	302.0	0	AAA domain	N/A
Pfam	UHGV-0213029_65	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0213029_65	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_66	phrog_253	124.6	6.5e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213029_66	UniRef90_UPI001B3C84DE	70.5	0.00000000000286	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0213029_66	742823.HMPREF9465_00905	88.2	7.16e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0213029_66	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0213029_66	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0213029_67	phrog_18107	119.0	4.6e-35	N/A	unknown function
UniRef90	UHGV-0213029_67	UniRef90_UPI00058F46CC	127.0	1.57e-33	N/A	N/A
eggNOG-mapper	UHGV-0213029_67	536233.CLO_1545	100.0	8.41e-24	N/A	N/A
structural_annotation	UHGV-0213029_67	PF05037	N/A	N/A	N/A	N/A