UHGV-0213321 (vOTU-049017)

Viral Genome: UHGV-0213321

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0213321
vOTU ID	vOTU-049017
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11031400_a1_ct1693@circular@Siphoviridae__sp._ctLch693
Associated BioSample	SAMN11031400
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.7
Jumbo phage	No

Genome content
Genome length (bp)	33,100
GC content	57.64%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	641.25
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213321_1	phrog_8	54.1	0.0000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213321_1	UniRef90_A0A6N3FDD4	235.0	0	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0213321_1	1507.HMPREF0262_00424	95.1	1.04e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0213321_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213321_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213321_1	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_2	phrog_87	72.4	4.7e-21	metallo-protease	other
UniRef90	UHGV-0213321_2	UniRef90_UPI001899699D	174.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0213321_2	1007096.BAGW01000011_gene2354	159.0	0	IrrE N-terminal-like domain	N/A
COG	UHGV-0213321_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0213321_2	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_3	phrog_33872	79.2	4.9e-23	N/A	unknown function
KOfam	UHGV-0213321_4	K14059	231.0	0	int; integrase	N/A
PHROG	UHGV-0213321_4	phrog_1	208.4	0	integrase	integration and excision
UniRef90	UHGV-0213321_4	UniRef90_H1C924	752.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0213321_4	742738.HMPREF9460_04031	279.0	0	Phage integrase family	N/A
Pfam	UHGV-0213321_4	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0213321_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0213321_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0213321_4	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_7	phrog_13890	58.5	9.1e-17	N/A	unknown function
UniRef90	UHGV-0213321_7	UniRef90_UPI0008F8D321	64.3	0.00000000000335	N/A	N/A
eggNOG-mapper	UHGV-0213321_7	742738.HMPREF9460_00716	50.8	0.0000000908	N/A	N/A
structural_annotation	UHGV-0213321_7	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_8	phrog_13890	52.6	0.0000000000000065	N/A	unknown function
UniRef90	UHGV-0213321_8	UniRef90_G9YS61	104.0	2.86e-28	Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein	N/A
Pfam	UHGV-0213321_8	PF05534	N/A	N/A	HicB family	HicB
structural_annotation	UHGV-0213321_8	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_10	phrog_937	43.0	0.0000000000023	hemolysin	other
eggNOG-mapper	UHGV-0213321_10	445972.ANACOL_00203	55.8	0.0000000132	N/A	N/A
PHROG	UHGV-0213321_11	phrog_1129	73.4	2.1e-21	holin	lysis
UniRef90	UHGV-0213321_11	UniRef90_A0A1C7FPV3	171.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0213321_11	1226322.HMPREF1545_00069	138.0	9.98005e-42	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0213321_11	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0213321_11	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_12	phrog_355	49.3	0.000000000000079	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213321_12	UniRef90_A0A8J6M6I8	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213321_12	397290.C810_05229	123.0	2.63e-35	N/A	N/A
structural_annotation	UHGV-0213321_12	PF14359	N/A	N/A	N/A	N/A
KOfam	UHGV-0213321_13	K01448	177.9	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0213321_13	phrog_18955	392.5	0	N/A	unknown function
UniRef90	UHGV-0213321_13	UniRef90_A0A1C7FQI4	775.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0213321_13	1226322.HMPREF1545_00782	252.0	0	N/A	N/A
Pfam	UHGV-0213321_13	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0213321_13	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0213321_13	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0213321_13	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_14	phrog_2310	64.2	1.1e-18	N/A	unknown function
PHROG	UHGV-0213321_15	phrog_24451	61.9	1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0213321_15	2754.EH55_13280	56.6	0.0000000471	N/A	N/A
structural_annotation	UHGV-0213321_16	PF03426,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_17	phrog_32744	1240.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0213321_17	1120998.AUFC01000030_gene2247	211.0	0	N/A	N/A
structural_annotation	UHGV-0213321_17	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_18	phrog_1194	64.4	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0213321_18	1120998.AUFC01000030_gene2246	94.4	8.11e-22	N/A	N/A
structural_annotation	UHGV-0213321_18	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_19	phrog_23464	630.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0213321_19	1408437.JNJN01000010_gene1238	145.0	1.08e-34	domain protein	N/A
COG	UHGV-0213321_19	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_20	phrog_706	143.2	1.60028e-42	N/A	unknown function
UniRef90	UHGV-0213321_20	UniRef90_A0A173Y9S4	367.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0213321_20	645991.Sgly_0348	160.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0213321_20	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0213321_20	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_21	phrog_11299	119.2	2.9e-35	N/A	unknown function
structural_annotation	UHGV-0213321_21	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_22	phrog_3099	141.5	3.99931e-42	N/A	unknown function
UniRef90	UHGV-0213321_22	UniRef90_A0A7M3SAI1	116.0	7.06e-29	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213321_22	1120998.AUFC01000030_gene2241	112.0	4.76e-29	N/A	N/A
structural_annotation	UHGV-0213321_22	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_23	phrog_3266	124.2	6e-37	tail completion	connector
eggNOG-mapper	UHGV-0213321_23	693746.OBV_18140	54.3	0.000000337	N/A	N/A
structural_annotation	UHGV-0213321_23	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_24	phrog_556	105.0	4.8e-32	minor head protein	head and packaging
UniRef90	UHGV-0213321_24	UniRef90_UPI0003FD237D	106.0	1.17e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0213321_24	645991.Sgly_0344	121.0	2.09e-33	N/A	N/A
Pfam	UHGV-0213321_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0213321_24	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213321_25	1120998.AUFC01000030_gene2238	55.5	0.0000000248	N/A	N/A
structural_annotation	UHGV-0213321_25	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_26	phrog_541	79.6	3.4e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0213321_26	903814.ELI_3207	66.6	0.00000000000198	N/A	N/A
PHROG	UHGV-0213321_27	phrog_267	58.0	1.5e-16	major head protein	head and packaging
eggNOG-mapper	UHGV-0213321_27	33035.JPJF01000030_gene2294	229.0	0	N/A	N/A
structural_annotation	UHGV-0213321_27	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_28	phrog_194	103.0	3.3e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0213321_28	UniRef90_A0A4R2MCH1	347.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0213321_28	411490.ANACAC_00778	91.3	3.21e-20	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0213321_28	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0213321_28	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_29	phrog_581	355.3	0	minor head protein	head and packaging
UniRef90	UHGV-0213321_29	UniRef90_A0A173Y6H6	709.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0213321_29	645991.Sgly_0338	418.0	0	N/A	N/A
Pfam	UHGV-0213321_29	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0213321_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213321_29	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_30	phrog_533	313.1	0	portal protein	head and packaging
UniRef90	UHGV-0213321_30	UniRef90_A0A173Y8E3	919.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0213321_30	545697.HMPREF0216_02845	195.0	0	N/A	N/A
structural_annotation	UHGV-0213321_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0213321_31	K06909	337.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0213321_31	phrog_5653	121.1	6.4e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0213321_31	UniRef90_A0A173Y831	864.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0213321_31	411471.SUBVAR_06507	510.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0213321_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0213321_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0213321_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0213321_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0213321_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_32	phrog_2412	67.1	2.8e-19	N/A	unknown function
UniRef90	UHGV-0213321_32	UniRef90_UPI0011CC13F5	67.8	0.00000000000639	stress-induced protein	N/A
eggNOG-mapper	UHGV-0213321_32	742738.HMPREF9460_02504	158.0	0	N/A	N/A
KOfam	UHGV-0213321_33	K22300	43.4	0.0000000000064	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0213321_33	phrog_8	59.1	1.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213321_33	UniRef90_A0A1C7FKI0	122.0	2.85e-35	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213321_33	1226322.HMPREF1545_00039	79.7	6.59e-19	sequence-specific DNA binding	N/A
Pfam	UHGV-0213321_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0213321_33	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213321_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213321_34	NF000937	N/A	N/A	N/A	N/A
KOfam	UHGV-0213321_35	K01160	65.0	2.1e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0213321_35	phrog_140	96.6	2.7e-28	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213321_35	UniRef90_A0A6G3M4Z7	238.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0213321_35	742738.HMPREF9460_01358	341.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0213321_35	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0213321_35	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
KOfam	UHGV-0213321_36	K07505	390.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0213321_36	phrog_2597	1115.4	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213321_36	UniRef90_A0A1C7FLS2	1491.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0213321_36	742738.HMPREF9460_01357	1359.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0213321_36	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0213321_36	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0213321_36	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0213321_36	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0213321_37	K17677	345.6	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0213321_37	phrog_16	278.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213321_37	UniRef90_A0A1C7FKB8	1028.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0213321_37	742738.HMPREF9460_01356	1054.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0213321_37	mREase_IV_00005	148.0	7.70714e-44	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0213321_37	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0213321_37	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0213321_37	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0213321_37	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_38	phrog_2698	183.2	0	N/A	unknown function
UniRef90	UHGV-0213321_38	UniRef90_A0A658JVW5	173.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213321_38	742738.HMPREF9460_01355	358.0	0	N/A	N/A
structural_annotation	UHGV-0213321_38	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0213321_39	phrog_124	229.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213321_39	UniRef90_UPI0011068BCC	395.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0213321_39	742738.HMPREF9460_01354	638.0	0	AAA domain	N/A
Pfam	UHGV-0213321_39	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0213321_39	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0213321_40	K03546	67.6	1.5e-19	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0213321_40	phrog_1499	463.1	0	N/A	unknown function
UniRef90	UHGV-0213321_40	UniRef90_A0A096BAS9	811.0	0	AAA_23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0213321_40	742738.HMPREF9460_01353	811.0	0	AAA domain	N/A
Pfam	UHGV-0213321_40	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0213321_40	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0213321_40	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213321_43	NF007621,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213321_46	UniRef90_A0A6N3FDM6	164.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0213321_46	1125971.ASJB01000083_gene1545	49.3	0.000000681	DNA excision	N/A
Pfam	UHGV-0213321_46	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0213321_46	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0213321_46	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
PHROG	UHGV-0213321_47	phrog_1726	203.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0213321_47	UniRef90_H1C928	495.0	0	Rha family phage regulatory protein	N/A
eggNOG-mapper	UHGV-0213321_47	742738.HMPREF9460_02487	487.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0213321_47	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0213321_47	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0213321_47	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213321_48	UniRef90_U2BKK8	145.0	1.96182e-44	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0213321_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0213321_48	PF13560,NF040507,COG1396	N/A	N/A	N/A	N/A