UHGV-0213408 (vOTU-139542)

Viral Genome: UHGV-0213408

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0213408
vOTU ID	vOTU-139542
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN09781788_a1_ct27289_vs1@Siphoviridae__sp._ct3sK1
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.38 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.6
Jumbo phage	No

Genome content
Genome length (bp)	29,645
GC content	47.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	88%
Average CDS length (bps)	621.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.38)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213408_3	phrog_434	44.2	0.000000000003	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213408_3	742738.HMPREF9460_00717	52.0	0.000000149	YqaJ viral recombinase family	N/A
COG	UHGV-0213408_3	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0213408_7	phrog_3377	175.4	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0213408_7	1460635.JCM19038_3433	164.0	0	N/A	N/A
PHROG	UHGV-0213408_8	phrog_14275	75.4	6.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0213408_8	1280676.AUJO01000001_gene2313	75.5	0.000000000000264	N/A	N/A
Pfam	UHGV-0213408_8	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0213408_8	PF03843,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_9	phrog_14275	41.5	0.000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0213408_9	1280696.ATVY01000001_gene3550	53.1	0.000000168	N/A	N/A
KOfam	UHGV-0213408_11	K07741	87.1	2e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-0213408_11	phrog_373	139.3	2.79993e-41	anti-repressor	transcription regulation
UniRef90	UHGV-0213408_11	UniRef90_UPI001C039A6C	173.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0213408_11	416870.llmg_0797	144.0	1.49e-39	ORF6C domain	N/A
Pfam	UHGV-0213408_11	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0213408_11	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0213408_11	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0213408_11	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213408_12	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213408_14	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0213408_14	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0213408_15	K14060	94.4	1.5e-27	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0213408_15	phrog_125	131.3	6.6e-39	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213408_15	UniRef90_UPI001A9B5A42	244.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0213408_15	1443122.Z958_05795	164.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0213408_15	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0213408_15	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0213408_15	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213408_16	NF009949	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213408_18	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_19	phrog_38	175.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0213408_19	UniRef90_UPI000419A6BC	428.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0213408_19	1121866.AUGK01000003_gene1428	428.0	0	chromosome segregation	N/A
COG	UHGV-0213408_19	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213408_19	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_22	phrog_64	154.7	0	portal protein	head and packaging
UniRef90	UHGV-0213408_22	UniRef90_A0A371ILT4	340.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0213408_22	1121866.AUGK01000003_gene1429	285.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0213408_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0213408_22	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213408_23	UniRef90_UPI0018A09237	71.2	0.000000000000117	N/A	N/A
eggNOG-mapper	UHGV-0213408_23	397290.C810_05229	69.3	0.000000000000125	N/A	N/A
structural_annotation	UHGV-0213408_23	PF14359,NF040588,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_26	phrog_29	205.3	0	major head protein	head and packaging
UniRef90	UHGV-0213408_26	UniRef90_A0A2Z4QBB4	386.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0213408_26	1347368.HG964404_gene4993	273.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0213408_26	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0213408_26	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213408_27	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0213408_27	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213408_28	1298920.KI911353_gene2656	55.8	0.0000000401	N/A	N/A
structural_annotation	UHGV-0213408_28	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213408_29	397290.C810_01411	52.8	0.00000347	N/A	N/A
structural_annotation	UHGV-0213408_30	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_31	phrog_158	42.5	0.000000000011	major tail protein	tail
UniRef90	UHGV-0213408_31	UniRef90_UPI001D087591	115.0	1.76e-30	phage tail protein	N/A
eggNOG-mapper	UHGV-0213408_31	1449343.JQLQ01000002_gene1514	58.2	0.0000000143	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0213408_31	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213408_32	1123263.AUKY01000015_gene1618	57.4	0.00000000429	N/A	N/A
Pfam	UHGV-0213408_32	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0213408_32	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213408_33	1121333.JMLH01000047_gene1011	74.7	0.00000000000000168	N/A	N/A
PHROG	UHGV-0213408_34	phrog_1535	159.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0213408_34	1121866.AUGK01000003_gene1437	223.0	0	phage tail tape measure protein	N/A
COG	UHGV-0213408_34	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0213408_35	phrog_1194	107.3	7.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0213408_35	1121866.AUGK01000003_gene1438	99.0	4.96e-25	N/A	N/A
Pfam	UHGV-0213408_35	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0213408_35	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0213408_36	phrog_6616	218.7	0	tail protein	tail
eggNOG-mapper	UHGV-0213408_36	445971.ANASTE_00088	118.0	5.31e-25	N/A	N/A
structural_annotation	UHGV-0213408_36	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0213408_40	K07273	179.4	0	acm; lysozyme	N/A
PHROG	UHGV-0213408_40	phrog_291	142.2	4.1002e-42	endolysin	lysis
UniRef90	UHGV-0213408_40	UniRef90_E2ZES5	286.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0213408_40	748224.HMPREF9436_00154	286.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0213408_40	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0213408_40	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0213408_40	PF01183,COG3757	N/A	N/A	N/A	N/A