UHGV-0213684 (vOTU-155618)

Viral Genome: UHGV-0213684

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0213684
vOTU ID	vOTU-155618
Representative Genome?	Yes
Source	CHVD
Original genome ID	SAMN11252277_a1_ct56360_vs1@Myoviridae__sp._ctLxL1
Associated BioSample	SAMN11252277
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.88
Jumbo phage	No

Genome content
Genome length (bp)	41,894
GC content	40.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	73
CDS density	92%
Average CDS length (bps)	527.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0213684_1	phrog_20593	44.6	0.0000000000024	N/A	unknown function
structural_annotation	UHGV-0213684_5	PF14282	N/A	N/A	N/A	N/A
KOfam	UHGV-0213684_7	K03111	127.9	1.2e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0213684_7	phrog_44	131.9	4.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213684_7	UniRef90_R7BIL2	238.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0213684_7	1280688.AUJB01000009_gene1658	185.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0213684_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0213684_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0213684_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0213684_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0213684_7	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_9	phrog_874	165.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0213684_9	411468.CLOSCI_00298	168.0	0	N/A	N/A
structural_annotation	UHGV-0213684_9	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213684_14	658655.HMPREF0988_00863	55.5	0.000000151	N/A	N/A
PHROG	UHGV-0213684_19	phrog_1578	55.6	4.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0213684_19	637730.C8XUQ6_9CAUD	49.3	0.000000873	N/A	N/A
KOfam	UHGV-0213684_20	K06167	52.8	0.0000000000000051	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0213684_20	phrog_392	180.4	0	metal-dependent hydrolase	other
UniRef90	UHGV-0213684_20	UniRef90_A0A412RQX2	357.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0213684_20	1122985.HMPREF1991_02241	156.0	1.96182e-44	N/A	N/A
Pfam	UHGV-0213684_20	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
dbAPIS	UHGV-0213684_20	APIS058	N/A	N/A	N/A	N/A
COG	UHGV-0213684_20	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0213684_20	PF02112,MF_01818,NF041851,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_22	phrog_25456	74.3	1e-21	N/A	unknown function
PHROG	UHGV-0213684_24	phrog_2185	274.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213684_24	UniRef90_UPI001BC46C39	435.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0213684_24	658655.HMPREF0988_00886	346.0	0	N/A	N/A
Pfam	UHGV-0213684_24	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0213684_24	NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_25	phrog_9958	153.9	0	N/A	unknown function
UniRef90	UHGV-0213684_25	UniRef90_A0A4Q5C6P1	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213684_25	658655.HMPREF0988_00873	192.0	0	N/A	N/A
Pfam	UHGV-0213684_25	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0213684_25	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_26	phrog_9958	109.2	2.7e-32	N/A	unknown function
eggNOG-mapper	UHGV-0213684_26	1297617.JPJD01000020_gene312	62.8	0.00000000199	N/A	N/A
Pfam	UHGV-0213684_26	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0213684_26	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_27	phrog_2164	96.7	9.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0213684_27	1174684.EBMC1_14695	52.8	0.00000903	N/A	N/A
KOfam	UHGV-0213684_28	K19171	99.4	3.5e-29	dndD; DNA sulfur modification protein DndD	N/A
PHROG	UHGV-0213684_28	phrog_77	181.5	0	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0213684_28	UniRef90_R7BHE4	1109.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0213684_28	1298920.KI911353_gene2731	307.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-0213684_28	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0213684_28	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0213684_28	PF02463,MF_00449,NF041034,COG0419	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_30	phrog_22529	199.7	0	N/A	unknown function
UniRef90	UHGV-0213684_30	UniRef90_R7BGN0	244.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-0213684_30	877420.ATVW01000029_gene1358	107.0	1.6e-25	3D domain	N/A
Pfam	UHGV-0213684_30	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0213684_30	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0213684_30	PF06725,MF_02071,TIGR00413,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-0213684_31	K07741	57.4	3.5e-16	antB; anti-repressor protein	N/A
PHROG	UHGV-0213684_31	phrog_373	111.8	7e-33	anti-repressor	transcription regulation
UniRef90	UHGV-0213684_31	UniRef90_R7BII5	444.0	0	AntA domain-containing protein	N/A
eggNOG-mapper	UHGV-0213684_31	397290.C810_01343	186.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-0213684_31	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0213684_31	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0213684_31	PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0213684_34	K22300	51.7	0.000000000000016	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0213684_34	phrog_1373	42.1	0.000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213684_34	UniRef90_A0A412ELD4	114.0	4.93e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213684_34	1235801.C822_00106	57.4	0.000000000296	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0213684_34	retron_type_VI_hth_cluster2_1	40.2	0.000000000095	N/A	Retron
Pfam	UHGV-0213684_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213684_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0213684_34	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_35	phrog_2967	47.3	0.000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213684_35	UniRef90_A0A416SLU4	140.0	1.35e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0213684_35	1235798.C817_00620	67.8	0.00000000000113	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0213684_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0213684_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0213684_35	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213684_37	742733.HMPREF9469_05008	57.8	0.0000000161	N/A	N/A
PHROG	UHGV-0213684_38	phrog_13589	182.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0213684_38	742733.HMPREF9469_05009	250.0	0	N/A	N/A
PHROG	UHGV-0213684_39	phrog_31538	45.4	0.0000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0213684_39	742740.HMPREF9474_02274	52.8	0.000000268	N/A	N/A
PHROG	UHGV-0213684_40	phrog_15594	79.8	2.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0213684_40	1118055.CAGU01000013_gene763	63.2	0.0000000000114	N/A	N/A
structural_annotation	UHGV-0213684_40	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_41	phrog_25468	61.5	4.4e-26	N/A	unknown function
Pfam	UHGV-0213684_41	PF05658	N/A	N/A	YadA head domain repeat (2 copies)	YadA_head
PHROG	UHGV-0213684_43	phrog_18190	566.0	0	N/A	unknown function
UniRef90	UHGV-0213684_43	UniRef90_R7BGL9	504.0	0	N/A	N/A
eggNOG-mapper	UHGV-0213684_43	1235790.C805_00089	363.0	0	N/A	N/A
structural_annotation	UHGV-0213684_43	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_44	phrog_1194	70.5	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0213684_44	483218.BACPEC_01144	74.3	0.00000000000000418	N/A	N/A
Pfam	UHGV-0213684_44	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0213684_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0213684_45	K19304	108.8	5.7e-32	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0213684_45	phrog_6700	75.3	2.6e-22	endolysin	lysis
UniRef90	UHGV-0213684_45	UniRef90_R7BGI7	241.0	0	LysM domain/M23/M37 peptidase domain protein	N/A
eggNOG-mapper	UHGV-0213684_45	717606.PaecuDRAFT_2260	103.0	2.73e-22	membrane	N/A
Pfam	UHGV-0213684_45	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0213684_45	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0213684_45	PF01551,PF05036,MF_02022,NF040883,NF008641,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_47	phrog_4608	147.5	9.3887e-44	anti-repressor	transcription regulation
UniRef90	UHGV-0213684_47	UniRef90_R7BIG3	336.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0213684_47	658655.HMPREF0988_00907	200.0	0	ORF6N domain	N/A
Pfam	UHGV-0213684_47	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0213684_47	PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213684_49	1336241.JAEB01000004_gene513	151.0	3.68541e-43	N/A	N/A
structural_annotation	UHGV-0213684_49	PF07233,NF038353,COG5633	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_51	phrog_2657	217.2	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213684_51	UniRef90_R7BHB1	413.0	0	Phage regulatory protein Rha family	N/A
eggNOG-mapper	UHGV-0213684_51	33035.JPJF01000043_gene993	308.0	0	N/A	N/A
Pfam	UHGV-0213684_51	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0213684_51	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0213684_51	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0213684_51	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_52	phrog_1204	277.9	0	tail protein	tail
eggNOG-mapper	UHGV-0213684_52	1298920.KI911353_gene2649	71.6	0.00000000133	tape measure	N/A
COG	UHGV-0213684_52	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0213684_53	phrog_1204	151.7	4.2039e-45	tail protein	tail
UniRef90	UHGV-0213684_53	UniRef90_A0A8D9PGP0	446.0	0	Minor tail protein	N/A
eggNOG-mapper	UHGV-0213684_53	1298920.KI911353_gene2649	186.0	0	tape measure	N/A
COG	UHGV-0213684_53	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0213684_53	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_55	phrog_36112	49.9	0.000000000000026	N/A	unknown function
UniRef90	UHGV-0213684_55	UniRef90_A0A8D9PG71	145.0	1.01006e-41	Tail assembly chaperone protein	N/A
eggNOG-mapper	UHGV-0213684_55	1298920.KI911353_gene2651	83.2	4.69e-18	N/A	N/A
structural_annotation	UHGV-0213684_55	PF11836	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213684_56	476272.RUMHYD_01968	182.0	0	N/A	N/A
structural_annotation	UHGV-0213684_56	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213684_57	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213684_58	UniRef90_UPI001BBD4500	152.0	5.60519e-44	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0213684_58	397290.C810_01411	203.0	0	N/A	N/A
structural_annotation	UHGV-0213684_58	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0213684_59	1298920.KI911353_gene2656	54.3	0.000000333	N/A	N/A
structural_annotation	UHGV-0213684_59	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_60	phrog_18218	134.6	2.9e-40	N/A	unknown function
UniRef90	UHGV-0213684_60	UniRef90_A0A8D9PGR5	179.0	0	Holin	N/A
eggNOG-mapper	UHGV-0213684_60	411902.CLOBOL_03424	81.6	1.22e-18	N/A	N/A
structural_annotation	UHGV-0213684_60	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_61	phrog_1863	55.1	5.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0213684_61	1232452.BAIB02000007_gene1606	51.2	0.00000106	N/A	N/A
eggNOG-mapper	UHGV-0213684_62	397290.C810_01402	57.0	0.00000000849	N/A	N/A
UniRef90	UHGV-0213684_63	UniRef90_A0A416G2T8	64.7	0.00000000000535	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0213684_63	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_64	phrog_29	164.1	0	major head protein	head and packaging
UniRef90	UHGV-0213684_64	UniRef90_A0A173UF26	646.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0213684_64	1347368.HG964404_gene4993	162.0	8.54792e-44	Phage major capsid protein E	N/A
Pfam	UHGV-0213684_64	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0213684_64	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_65	phrog_909	79.6	3.2e-23	major head protein	head and packaging
UniRef90	UHGV-0213684_65	UniRef90_R7BGI8	171.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0213684_65	1078085.HMPREF1210_01145	62.0	0.0000000000481	N/A	N/A
PHROG	UHGV-0213684_67	phrog_64	170.6	0	portal protein	head and packaging
UniRef90	UHGV-0213684_67	UniRef90_R7BGE4	829.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0213684_67	1298920.KI911353_gene2663	452.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0213684_67	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0213684_67	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213684_68	PF10122,NF041070,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_69	phrog_36	74.7	1.4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0213684_69	UniRef90_A0A352SH29	121.0	3.59e-33	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-0213684_69	97138.C820_00772	86.7	8.48e-20	sigma factor activity	N/A
COG	UHGV-0213684_69	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0213684_69	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_70	phrog_38	150.3	1.26117e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0213684_70	UniRef90_UPI001D009E65	1035.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0213684_70	1121866.AUGK01000003_gene1428	233.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0213684_70	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0213684_70	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0213684_70	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0213684_71	UniRef90_UPI0011072322	79.7	6.31e-17	N/A	N/A
eggNOG-mapper	UHGV-0213684_71	1256908.HMPREF0373_00479	71.2	0.0000000000000202	N/A	N/A
structural_annotation	UHGV-0213684_71	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0213684_72	phrog_1233	86.7	2.2e-25	N/A	unknown function
UniRef90	UHGV-0213684_72	UniRef90_UPI001C39EFB9	155.0	0	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0213684_72	357809.Cphy_2967	100.0	2.64e-25	N/A	N/A
structural_annotation	UHGV-0213684_72	PF13058	N/A	N/A	N/A	N/A