UHGV-0214315 (vOTU-107303)

Viral Genome: UHGV-0214315

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0214315
vOTU ID	vOTU-107303
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR171544_141_80609_round13~8612226
Associated BioSample	SAMD00164854
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9755
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.69
Jumbo phage	No

Genome content
Genome length (bp)	23,461
GC content	29.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	96%
Average CDS length (bps)	646.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0214315_4	1414720.CBYM010000040_gene1631	134.0	9.54004e-41	N/A	N/A
PHROG	UHGV-0214315_5	phrog_22662	48.2	0.00000000000024	N/A	unknown function
PHROG	UHGV-0214315_8	phrog_373	169.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0214315_8	UniRef90_UPI0018AC2428	287.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0214315_8	1414720.CBYM010000002_gene582	460.0	0	ORF6C domain	N/A
Pfam	UHGV-0214315_8	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0214315_8	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0214315_8	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0214315_8	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0214315_8	PF10552,PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_9	phrog_1974	51.5	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0214315_9	1414720.CBYM010000002_gene581	141.0	2.17e-39	37-kD nucleoid-associated bacterial protein	N/A
Pfam	UHGV-0214315_9	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-0214315_9	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
KOfam	UHGV-0214315_10	K03744	149.6	2.66247e-44	lemA; LemA protein	N/A
PHROG	UHGV-0214315_10	phrog_1383	145.4	2.60642e-43	virion structural protein	head and packaging
UniRef90	UHGV-0214315_10	UniRef90_UPI0018A93D91	286.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0214315_10	742735.HMPREF9467_00879	229.0	0	LemA family	N/A
Pfam	UHGV-0214315_10	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0214315_10	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0214315_10	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_11	phrog_3886	262.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0214315_11	742735.HMPREF9467_00880	272.0	0	N/A	N/A
PHROG	UHGV-0214315_13	phrog_25509	117.3	5.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0214315_13	1414720.CBYM010000002_gene580	138.0	2.48997e-41	N/A	N/A
PHROG	UHGV-0214315_15	phrog_1558	184.7	0	N/A	unknown function
UniRef90	UHGV-0214315_15	UniRef90_A0A174GQI9	290.0	0	Sigma-70 region 4 type 2	N/A
eggNOG-mapper	UHGV-0214315_15	1187894.I2E8Y5_9CAUD	184.0	0	N/A	N/A
structural_annotation	UHGV-0214315_15	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0214315_16	K07451	49.7	0.000000000000074	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0214315_16	phrog_144	83.7	2.5e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0214315_16	UniRef90_A0A1C6JML1	258.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0214315_16	1414720.CBYM010000002_gene577	258.0	0	HNH nucleases	N/A
Pfam	UHGV-0214315_16	PF01844	N/A	N/A	HNH endonuclease	HNH
UniRef90	UHGV-0214315_17	UniRef90_A0A1C6JNN5	226.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0214315_17	1414720.CBYM010000002_gene576	354.0	0	N/A	N/A
structural_annotation	UHGV-0214315_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_18	phrog_9	240.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0214315_18	UniRef90_UPI0004B72672	1109.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0214315_18	1414720.CBYM010000002_gene575	1109.0	0	Terminase	N/A
Pfam	UHGV-0214315_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0214315_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0214315_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0214315_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_20	phrog_12	191.3	0	portal protein	head and packaging
UniRef90	UHGV-0214315_20	UniRef90_UPI00105507BA	783.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0214315_20	1414720.CBYM010000002_gene574	711.0	0	Portal protein	N/A
Pfam	UHGV-0214315_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0214315_20	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0214315_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0214315_20	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0214315_21	K06904	101.5	1.3e-29	N/A	N/A
PHROG	UHGV-0214315_21	phrog_80	129.9	3.4e-38	head maturation protease	head and packaging
UniRef90	UHGV-0214315_21	UniRef90_UPI00164AE523	340.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0214315_21	1414720.CBYM010000002_gene573	331.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0214315_21	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0214315_21	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0214315_21	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0214315_21	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_22	phrog_10	244.4	0	major head protein	head and packaging
UniRef90	UHGV-0214315_22	UniRef90_UPI00164A7C3B	582.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0214315_22	1414720.CBYM010000002_gene572	347.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0214315_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0214315_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0214315_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0214315_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_23	phrog_6865	50.2	0.000000000000046	N/A	unknown function
structural_annotation	UHGV-0214315_23	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_24	phrog_40	46.0	0.00000000000088	head-tail adaptor Ad1	connector
UniRef90	UHGV-0214315_24	UniRef90_UPI001055080F	145.0	1.00893e-43	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0214315_24	1414720.CBYM010000002_gene570	176.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0214315_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0214315_24	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0214315_24	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_25	phrog_25	84.1	1.3e-24	head closure Hc1	connector
UniRef90	UHGV-0214315_25	UniRef90_A0A1C6JMX8	169.0	0	Bacteriophage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0214315_25	1414720.CBYM010000002_gene569	169.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0214315_25	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0214315_25	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0214315_25	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0214315_25	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_26	phrog_5	57.4	3e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0214315_26	UniRef90_A0A1C6JN94	279.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0214315_26	1414720.CBYM010000002_gene568	279.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0214315_26	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0214315_26	PF17395,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0214315_27	UniRef90_UPI000BB98E7D	128.0	1.01e-35	N/A	N/A
eggNOG-mapper	UHGV-0214315_27	1414720.CBYM010000002_gene567	222.0	0	N/A	N/A
structural_annotation	UHGV-0214315_27	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_28	phrog_158	66.1	7.1e-19	major tail protein	tail
UniRef90	UHGV-0214315_28	UniRef90_A0A1C6JNH2	262.0	0	Predicted secreted protein	N/A
eggNOG-mapper	UHGV-0214315_28	1414720.CBYM010000002_gene566	262.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0214315_28	PF16461	N/A	N/A	Lambda phage tail tube protein, TTP	Phage_TTP_12
structural_annotation	UHGV-0214315_28	PF16461,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_30	phrog_2115	60.5	3.6e-17	tail protein	tail
UniRef90	UHGV-0214315_30	UniRef90_A0A533S6D3	71.2	0.0000000000000472	Gene transfer agent family protein	N/A
eggNOG-mapper	UHGV-0214315_30	1414720.CBYM010000002_gene564	171.0	0	N/A	N/A
structural_annotation	UHGV-0214315_30	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_31	phrog_19318	52.9	0.0000000000000066	N/A	unknown function
UniRef90	UHGV-0214315_31	UniRef90_A0A533S6H6	70.1	0.000000000000144	Phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0214315_31	1414720.CBYM010000001_gene706	63.9	0.00000000000456	N/A	N/A
PHROG	UHGV-0214315_32	phrog_31409	334.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0214315_32	UniRef90_A0A1C6GVH2	445.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0214315_32	1414720.CBYM010000002_gene562	1041.0	0	phage tail tape measure protein	N/A
COG	UHGV-0214315_32	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0214315_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_33	phrog_1194	125.5	2.2e-37	N/A	unknown function
eggNOG-mapper	UHGV-0214315_33	1280692.AUJL01000027_gene2149	179.0	0	N/A	N/A
Pfam	UHGV-0214315_33	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0214315_33	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0214315_34	phrog_6616	157.8	0	tail protein	tail
eggNOG-mapper	UHGV-0214315_34	1414720.CBYM010000002_gene560	169.0	2.95996e-41	Phage minor structural protein	N/A
COG	UHGV-0214315_34	COG4926	N/A	N/A	Phage-related protein	N/A
KOfam	UHGV-0214315_35	K10421	43.9	0.0000000000015	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
eggNOG-mapper	UHGV-0214315_35	545697.HMPREF0216_02867	260.0	0	domain, Protein	N/A
Pfam	UHGV-0214315_35	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
Pfam	UHGV-0214315_35	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
COG	UHGV-0214315_35	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A