UHGV-0214533 (vOTU-017703)

Viral Genome: UHGV-0214533

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0214533
vOTU ID	vOTU-017703
Representative Genome?	Yes
Source	CHVD
Original genome ID	SRS147377_a1_ct54902_vs01@Caudovirales__sp._ctuW439@linear
Associated BioSample	SAMN00146594
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9822
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.76
Jumbo phage	No

Genome content
Genome length (bp)	27,539
GC content	56.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	96%
Average CDS length (bps)	559.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0214533_1	phrog_16490	199.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0214533_1	658655.HMPREF0988_00917	161.0	0	N/A	N/A
PHROG	UHGV-0214533_2	phrog_22984	107.8	5.6e-32	N/A	unknown function
PHROG	UHGV-0214533_3	phrog_21718	119.9	1.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-0214533_3	397290.C810_05210	75.5	0.00000000000000515	N/A	N/A
PHROG	UHGV-0214533_4	phrog_3754	101.2	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0214533_4	476272.RUMHYD_01764	181.0	0	N/A	N/A
UniRef90	UHGV-0214533_6	UniRef90_A0A1C6JAI6	73.2	0.00000000000000287	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0214533_6	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0214533_7	K01448	122.4	5.6e-36	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0214533_7	phrog_435	120.9	1.2e-35	endolysin	lysis
UniRef90	UHGV-0214533_7	UniRef90_UPI001C107E48	95.5	1.23e-17	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0214533_7	1410668.JNKC01000001_gene1675	164.0	3.50325e-44	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0214533_7	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0214533_7	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0214533_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0214533_7	PF01520,PF09992,PF01471,MF_00562,TIGR02883,COG0860,COG4632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_9	phrog_13256	73.5	1.9e-21	N/A	unknown function
eggNOG-mapper	UHGV-0214533_9	1226322.HMPREF1545_00132	83.6	1.89e-20	N/A	N/A
PHROG	UHGV-0214533_10	phrog_37604	184.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0214533_10	1232443.BAIA02000078_gene10	129.0	3.52e-36	N/A	N/A
UniRef90	UHGV-0214533_11	UniRef90_A0A1Y4UUC3	53.1	0.0000000227	XkdX family protein	N/A
structural_annotation	UHGV-0214533_11	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0214533_13	552398.HMPREF0866_02181	57.4	0.00000024	N/A	N/A
eggNOG-mapper	UHGV-0214533_14	1226322.HMPREF1545_00062	53.5	0.00000863	N/A	N/A
structural_annotation	UHGV-0214533_14	PF00354	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_15	phrog_13879	485.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0214533_15	1235797.C816_02659	722.0	0	N/A	N/A
structural_annotation	UHGV-0214533_15	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0214533_16	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_17	phrog_3981	277.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0214533_17	536233.CLO_1577	311.0	0	tape measure	N/A
COG	UHGV-0214533_17	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0214533_17	MF_04138,COG5281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0214533_19	UniRef90_A0A285PXU7	78.6	4.28e-16	Consensus disorder prediction	N/A
PHROG	UHGV-0214533_20	phrog_885	100.6	1.3e-29	major tail protein	tail
UniRef90	UHGV-0214533_20	UniRef90_A0A843J9F0	154.0	5.74532e-43	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0214533_20	1111121.HMPREF1247_0789	173.0	0	N/A	N/A
structural_annotation	UHGV-0214533_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0214533_21	UniRef90_A0A415JI88	110.0	1.26e-28	N/A	N/A
structural_annotation	UHGV-0214533_21	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_22	phrog_17977	71.7	8.1e-21	N/A	unknown function
UniRef90	UHGV-0214533_22	UniRef90_UPI00141211AB	97.1	9.51e-24	head-tail adaptor protein	N/A
structural_annotation	UHGV-0214533_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_23	phrog_1236	40.2	0.0000000000059	head protein	head and packaging
PHROG	UHGV-0214533_24	phrog_544	191.4	0	major head protein	head and packaging
UniRef90	UHGV-0214533_24	UniRef90_A0A810PZM2	419.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0214533_24	1347392.CCEZ01000005_gene1236	277.0	0	N/A	N/A
structural_annotation	UHGV-0214533_24	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
UniRef90	UHGV-0214533_25	UniRef90_A0A3E0B009	56.2	0.00000213	Minor structural protein GP20	N/A
structural_annotation	UHGV-0214533_25	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0214533_26	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_28	phrog_5	81.1	1.9e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0214533_28	UniRef90_UPI001411BC8C	195.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0214533_28	1504822.CCNO01000013_gene284	88.6	5.06e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0214533_28	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0214533_28	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0214533_28	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_30	phrog_2468	102.7	3.4e-30	head morphogenesis	head and packaging
UniRef90	UHGV-0214533_30	UniRef90_A0A810PSD3	464.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0214533_30	1504822.CCNO01000013_gene286	185.0	0	cell adhesion	N/A
Pfam	UHGV-0214533_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0214533_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0214533_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_31	phrog_64	170.9	0	portal protein	head and packaging
UniRef90	UHGV-0214533_31	UniRef90_A0A856HZB4	660.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0214533_31	1256908.HMPREF0373_00485	98.6	2.91e-19	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0214533_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0214533_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0214533_32	K06909	121.7	8.2e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0214533_32	phrog_10250	166.5	0	N/A	unknown function
UniRef90	UHGV-0214533_32	UniRef90_A0A3D3Y0N9	677.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0214533_32	1226322.HMPREF1545_00043	615.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0214533_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0214533_32	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0214533_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0214533_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0214533_32	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0214533_33	K00571	191.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0214533_33	phrog_498	110.1	2.3e-32	DNA methyltransferase	other
UniRef90	UHGV-0214533_33	UniRef90_A0A431IA37	283.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0214533_33	479437.Elen_2607	161.0	0	DNA methylase	N/A
PADLOC	UHGV-0214533_33	MTase_II_00157	141.0	2.94273e-44	Type II methyltransferase	RM
Pfam	UHGV-0214533_33	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0214533_33	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0214533_33	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_35	phrog_2657	184.0	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0214533_35	UniRef90_A0A374AXT0	319.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0214533_35	411490.ANACAC_00702	286.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0214533_35	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0214533_35	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0214533_35	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0214533_35	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0214533_36	216594.MMAR_1994	52.4	0.000000293	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0214533_36	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
PHROG	UHGV-0214533_37	phrog_2245	51.3	0.000000000000023	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0214533_37	NF001611,COG1694	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0214533_38	318464.IO99_07375	79.7	4.45e-18	N/A	N/A
Pfam	UHGV-0214533_41	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0214533_43	phrog_38832	73.2	2.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0214533_43	445972.ANACOL_00165	72.0	0.00000000000115	N/A	N/A
structural_annotation	UHGV-0214533_43	PF07073	N/A	N/A	N/A	N/A
PHROG	UHGV-0214533_44	phrog_7704	48.8	0.00000000000015	N/A	unknown function
UniRef90	UHGV-0214533_44	UniRef90_UPI0019214AF7	88.6	8.9e-21	N/A	N/A
eggNOG-mapper	UHGV-0214533_44	155864.EDL933_3275	52.4	0.000000684	N/A	N/A
Pfam	UHGV-0214533_44	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0214533_44	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-0214533_46	552398.HMPREF0866_03131	60.5	0.0000000000185	N/A	N/A
PHROG	UHGV-0214533_47	phrog_18079	47.2	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-0214533_47	645991.Sgly_0315	106.0	9.87e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0214533_47	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0214533_47	NF007410	N/A	N/A	N/A	N/A