UHGV-0220047 (vOTU-153098)

Viral Genome: UHGV-0220047

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0220047
vOTU ID	vOTU-153098
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR127721_141_24884_round13~7418929
Associated BioSample	SAMD00114967
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.93 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.4
Jumbo phage	No

Genome content
Genome length (bp)	23,127
GC content	40.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	91%
Average CDS length (bps)	436.69
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.93)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0220047_3	K18830	61.5	1.4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0220047_3	phrog_8	47.1	0.00000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0220047_3	UniRef90_UPI000677B37D	248.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0220047_3	1235798.C817_05486	134.0	6.28e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0220047_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0220047_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0220047_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_5	phrog_20330	92.1	4.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0220047_5	235909.GK0498	82.0	1.59e-18	N/A	N/A
PHROG	UHGV-0220047_7	phrog_373	110.4	1.7e-32	anti-repressor	transcription regulation
UniRef90	UHGV-0220047_7	UniRef90_UPI000E4A5456	446.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0220047_7	1304866.K413DRAFT_3063	335.0	0	TIGRFAM phage regulatory protein, Rha family	N/A
Pfam	UHGV-0220047_7	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0220047_7	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0220047_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0220047_7	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0220047_10	K07741	111.4	2e-32	antB; anti-repressor protein	N/A
PHROG	UHGV-0220047_10	phrog_63	219.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0220047_10	UniRef90_UPI0015706F54	458.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0220047_10	1582156.A0A0A8WJ71_9CAUD	238.0	0	DNA binding	N/A
Pfam	UHGV-0220047_10	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0220047_10	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0220047_10	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0220047_10	PF03374,PF09669,TIGR02681,COG3645,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_15	phrog_5070	152.5	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0220047_15	UniRef90_C6L9Y5	142.0	1.9e-39	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0220047_15	411470.RUMGNA_02189	201.0	0	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0220047_15	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0220047_15	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0220047_15	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_17	phrog_30234	94.2	7.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-0220047_17	33035.JPJF01000071_gene4461	55.1	0.00000000219	N/A	N/A
PHROG	UHGV-0220047_19	phrog_155	88.5	9.5e-26	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0220047_19	UniRef90_A0A6N2RMY2	291.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0220047_19	1484479.DI14_04910	92.0	7.07e-20	ERF superfamily	N/A
Pfam	UHGV-0220047_19	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0220047_19	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0220047_20	K03111	129.9	3.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0220047_20	phrog_44	144.4	6.69821e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0220047_20	UniRef90_A0A1C5QS41	194.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0220047_20	411460.RUMTOR_02067	185.0	0	N/A	N/A
Pfam	UHGV-0220047_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0220047_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0220047_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0220047_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0220047_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_21	phrog_3490	144.6	5.19882e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0220047_21	UniRef90_A0A1C5UKT4	266.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0220047_21	658655.HMPREF0988_02583	249.0	0	ERCC4 domain	N/A
Pfam	UHGV-0220047_21	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0220047_21	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0220047_22	K02316	71.9	1.1e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0220047_22	phrog_11992	174.0	0	N/A	unknown function
UniRef90	UHGV-0220047_22	UniRef90_UPI00156FEB22	323.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0220047_22	1304866.K413DRAFT_0824	210.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0220047_22	drt-UG29	58.6	6.5e-17	DRT	DRT
Pfam	UHGV-0220047_22	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0220047_22	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0220047_22	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_23	phrog_8841	621.0	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0220047_23	UniRef90_UPI00156EF603	1127.0	0	N/A	N/A
eggNOG-mapper	UHGV-0220047_23	476272.RUMHYD_01742	838.0	0	N/A	N/A
Pfam	UHGV-0220047_23	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0220047_23	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0220047_23	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0220047_23	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_25	phrog_23374	64.5	1.5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0220047_25	1256908.HMPREF0373_00664	79.0	9.93e-19	N/A	N/A
structural_annotation	UHGV-0220047_26	NF041290	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_27	phrog_17690	163.0	0	N/A	unknown function
UniRef90	UHGV-0220047_27	UniRef90_A0A6L5XWF4	112.0	1.59e-29	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0220047_27	665950.HMPREF1025_02546	164.0	0	N/A	N/A
PHROG	UHGV-0220047_33	phrog_36	50.9	0.000000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0220047_33	UniRef90_A0A7X4ZQ48	134.0	7.49e-38	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0220047_33	1235792.C808_05360	124.0	7.79e-35	N/A	N/A
structural_annotation	UHGV-0220047_33	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_34	phrog_119	83.7	2.4e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0220047_34	UniRef90_A0A3E4V813	198.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0220047_34	1232453.BAIF02000028_gene2717	140.0	1.10002e-41	HNH nucleases	N/A
COG	UHGV-0220047_34	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0220047_35	PF04320,MF_00360,NF008333,COG3171	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_36	phrog_361	96.1	3.1e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0220047_36	UniRef90_UPI001D0DE0A6	179.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0220047_36	1158604.I591_01771	183.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0220047_36	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0220047_36	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0220047_36	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_37	phrog_9	293.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0220047_37	UniRef90_A0A3E4V817	1147.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0220047_37	1232453.BAIF02000028_gene2720	1056.0	0	Phage Terminase	N/A
Pfam	UHGV-0220047_37	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0220047_37	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0220047_37	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0220047_37	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_38	phrog_12	165.9	0	portal protein	head and packaging
UniRef90	UHGV-0220047_38	UniRef90_A0A3E4V862	778.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0220047_38	1232453.BAIF02000028_gene2721	629.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0220047_38	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0220047_38	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0220047_38	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0220047_38	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0220047_39	K06904	161.8	0	N/A	N/A
PHROG	UHGV-0220047_39	phrog_80	185.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0220047_39	UniRef90_A0A3E4V855	354.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0220047_39	1232453.BAIF02000028_gene2722	299.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0220047_39	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0220047_39	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0220047_39	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0220047_39	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_40	phrog_10	181.9	0	major head protein	head and packaging
UniRef90	UHGV-0220047_40	UniRef90_UPI000466EB68	636.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0220047_40	1232453.BAIF02000028_gene2723	490.0	0	capsid protein	N/A
Pfam	UHGV-0220047_40	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0220047_40	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0220047_40	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0220047_40	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0220047_41	UniRef90_UPI001D05A857	140.0	6.50006e-41	head fiber protein	N/A
eggNOG-mapper	UHGV-0220047_41	1232443.BAIA02000078_gene28	64.3	0.0000000000112	domain, Protein	N/A
Pfam	UHGV-0220047_41	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-0220047_41	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0220047_42	phrog_2550	86.4	1.7e-25	N/A	unknown function
UniRef90	UHGV-0220047_42	UniRef90_A0A3E3JYI5	114.0	3.05e-31	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0220047_42	1232453.BAIF02000028_gene2725	112.0	3.13e-31	N/A	N/A
structural_annotation	UHGV-0220047_42	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_43	phrog_1951	105.8	2.2e-31	head-tail adaptor	connector
UniRef90	UHGV-0220047_43	UniRef90_UPI001D057432	203.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0220047_43	1232453.BAIF02000028_gene2726	136.0	1.64e-40	N/A	N/A
NCBIFam	UHGV-0220047_43	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0220047_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_44	phrog_5	43.8	0.000000000007	tail completion or Neck1 protein	connector
UniRef90	UHGV-0220047_44	UniRef90_UPI000465037A	201.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0220047_44	1158604.I591_01763	88.2	8.99e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0220047_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0220047_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_45	phrog_78	57.2	3.6e-16	tail terminator	connector
UniRef90	UHGV-0220047_45	UniRef90_A0A0D6DV47	105.0	1.32e-26	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0220047_45	272623.L59277	110.0	3.75e-30	N/A	N/A
structural_annotation	UHGV-0220047_45	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_46	phrog_88	153.4	1.4013e-45	major tail protein	tail
UniRef90	UHGV-0220047_46	UniRef90_A0A3E4V8A6	358.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0220047_46	1232453.BAIF02000028_gene2729	269.0	0	phage major tail protein, phi13 family	N/A
Pfam	UHGV-0220047_46	PF06488	N/A	N/A	Phage tail tube protein	L_lac_phage_MSP
NCBIFam	UHGV-0220047_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0220047_46	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_47	phrog_709	143.2	8.50588e-43	N/A	unknown function
UniRef90	UHGV-0220047_47	UniRef90_A0A0D6DV15	129.0	2.13e-36	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-0220047_47	1232453.BAIF02000028_gene2730	174.0	0	N/A	N/A
structural_annotation	UHGV-0220047_47	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0220047_48	phrog_5755	85.8	6e-25	tail length tape measure protein	tail
UniRef90	UHGV-0220047_48	UniRef90_D2MNR3	63.9	0.0000000000215	Tail tape measure protein, TP901 family	N/A
eggNOG-mapper	UHGV-0220047_48	1232453.BAIF02000028_gene2732	87.8	2.11e-19	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0220047_48	COG3953	N/A	N/A	SLT domain protein	N/A