UHGV-0225568 (vOTU-049258)

Viral Genome: UHGV-0225568

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0225568
vOTU ID	vOTU-049258
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_93402_round1256~4010675
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.25
Jumbo phage	No

Genome content
Genome length (bp)	42,341
GC content	40.89%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	92%
Average CDS length (bps)	587.00
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0225568_1	1235793.C809_02210	105.0	3.13e-27	N/A	N/A
structural_annotation	UHGV-0225568_1	PF09038	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_4	K06909	382.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0225568_4	phrog_3717	147.7	5.46506e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0225568_4	UniRef90_A0A6L8SYJ6	1035.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0225568_4	33035.JPJF01000106_gene3136	531.0	0	Terminase small subunit	N/A
Pfam	UHGV-0225568_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0225568_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0225568_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0225568_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0225568_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_5	phrog_533	293.6	0	portal protein	head and packaging
UniRef90	UHGV-0225568_5	UniRef90_A0A1C6CDM8	711.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0225568_5	33035.JPJF01000106_gene3135	546.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0225568_5	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_7	K00640	51.1	0.000000000000022	cysE; serine O-acetyltransferase [EC:2.3.1.30]	N/A
PHROG	UHGV-0225568_7	phrog_2154	50.8	0.000000000000022	N/A	unknown function
UniRef90	UHGV-0225568_7	UniRef90_A0A4Q0M8Z2	211.0	0	Serine acetyltransferase	N/A
eggNOG-mapper	UHGV-0225568_7	143224.JQMD01000002_gene3419	125.0	1.85e-33	Bacterial transferase hexapeptide (six repeats)	N/A
COG	UHGV-0225568_7	COG1045	N/A	N/A	Serine acetyltransferase	N/A
PHROG	UHGV-0225568_8	phrog_581	264.7	0	minor head protein	head and packaging
UniRef90	UHGV-0225568_8	UniRef90_A0A395X791	755.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0225568_8	476272.RUMHYD_01761	417.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0225568_8	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0225568_8	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_8	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_9	phrog_3754	111.5	5.7e-33	N/A	unknown function
eggNOG-mapper	UHGV-0225568_9	476272.RUMHYD_01764	180.0	0	N/A	N/A
UniRef90	UHGV-0225568_10	UniRef90_A0A395X7A4	178.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0225568_10	476272.RUMHYD_01766	120.0	3.06e-34	N/A	N/A
PHROG	UHGV-0225568_11	phrog_21718	134.7	3.9e-40	N/A	unknown function
eggNOG-mapper	UHGV-0225568_11	476272.RUMHYD_01768	129.0	3.21e-36	N/A	N/A
PHROG	UHGV-0225568_12	phrog_22984	95.1	4.2e-28	N/A	unknown function
PHROG	UHGV-0225568_13	phrog_16490	193.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0225568_13	397290.C810_01328	188.0	0	N/A	N/A
PHROG	UHGV-0225568_14	phrog_20016	207.5	0	N/A	unknown function
UniRef90	UHGV-0225568_14	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0225568_14	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-0225568_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_15	phrog_28802	224.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0225568_15	476272.RUMHYD_01772	200.0	0	N/A	N/A
PHROG	UHGV-0225568_16	phrog_194	65.1	1.4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0225568_16	UniRef90_UPI001D14C9C8	186.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0225568_16	476272.RUMHYD_01775	199.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0225568_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0225568_17	phrog_544	166.6	0	major head protein	head and packaging
UniRef90	UHGV-0225568_17	UniRef90_A0A395X7A1	723.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_17	1232453.BAIF02000011_gene3359	392.0	0	N/A	N/A
Pfam	UHGV-0225568_17	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0225568_17	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_18	phrog_541	97.6	6.5e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0225568_18	476272.RUMHYD_01778	110.0	2e-28	N/A	N/A
PHROG	UHGV-0225568_20	phrog_1129	75.8	3.7e-22	holin	lysis
UniRef90	UHGV-0225568_20	UniRef90_A0A395X7B2	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0225568_20	411461.DORFOR_00721	113.0	1.02e-31	N/A	N/A
Pfam	UHGV-0225568_20	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0225568_20	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_21	phrog_3366	97.7	1.1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0225568_21	476272.RUMHYD_01779	157.0	0	N/A	N/A
structural_annotation	UHGV-0225568_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_22	phrog_556	66.1	3.5e-19	minor head protein	head and packaging
UniRef90	UHGV-0225568_22	UniRef90_UPI000E4989EB	297.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0225568_22	476272.RUMHYD_01780	160.0	0	N/A	N/A
Pfam	UHGV-0225568_22	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0225568_22	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_23	phrog_3266	93.1	2.2e-27	tail completion	connector
eggNOG-mapper	UHGV-0225568_23	476272.RUMHYD_01781	150.0	3.50325e-44	N/A	N/A
structural_annotation	UHGV-0225568_23	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_24	phrog_3099	132.6	2.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0225568_24	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0225568_24	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_25	phrog_11299	66.7	4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0225568_25	411459.RUMOBE_01382	58.9	0.00000000418	N/A	N/A
structural_annotation	UHGV-0225568_25	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_26	phrog_706	131.8	4.7e-39	N/A	unknown function
UniRef90	UHGV-0225568_26	UniRef90_UPI001BAD00AD	210.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0225568_26	411459.RUMOBE_01383	353.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0225568_26	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0225568_26	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_27	phrog_1535	482.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0225568_27	UniRef90_A0A173R880	846.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0225568_27	476272.RUMHYD_01785	844.0	0	phage tail tape measure protein	N/A
COG	UHGV-0225568_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_27	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_28	phrog_1194	85.3	5.6e-25	N/A	unknown function
structural_annotation	UHGV-0225568_28	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_29	phrog_6616	548.7	0	tail protein	tail
UniRef90	UHGV-0225568_29	UniRef90_A0A352BLY8	521.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_29	33035.JPJF01000043_gene1002	263.0	0	N/A	N/A
structural_annotation	UHGV-0225568_29	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_30	phrog_18444	80.3	1.4e-23	N/A	unknown function
KOfam	UHGV-0225568_31	K19719	94.1	2.7e-28	COL2A; collagen type II alpha	N/A
PHROG	UHGV-0225568_31	phrog_819	130.3	0	tail protein	tail
UniRef90	UHGV-0225568_31	UniRef90_A0A3A6GQL7	1209.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_31	1508644.SFBmNL_00815	97.4	5.82e-18	N/A	N/A
Pfam	UHGV-0225568_31	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0225568_31	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0225568_31	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_33	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_34	K07273	200.5	0	acm; lysozyme	N/A
PHROG	UHGV-0225568_34	phrog_6745	153.1	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0225568_34	UniRef90_A0A6L8SXR6	720.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_34	457412.RSAG_00790	522.0	0	CHAP domain	N/A
Pfam	UHGV-0225568_34	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0225568_34	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0225568_34	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0225568_34	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_35	K14059	100.8	2e-29	int; integrase	N/A
PHROG	UHGV-0225568_35	phrog_1	127.8	1.1e-37	integrase	integration and excision
UniRef90	UHGV-0225568_35	UniRef90_A0A6L8SXX0	788.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0225568_35	1235792.C808_05256	351.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0225568_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0225568_35	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0225568_35	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0225568_36	UniRef90_A0A3A6GQZ1	170.0	0	Zinc ribbon domain-containing protein	N/A
COG	UHGV-0225568_36	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_38	K18830	65.0	7.2e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0225568_38	phrog_8	53.6	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0225568_38	UniRef90_A0A6L8T004	238.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_38	748224.HMPREF9436_01444	118.0	2.06e-32	N/A	N/A
PADLOC	UHGV-0225568_38	retron_type_VI_hth_cluster2_1	40.1	0.000000000095	N/A	Retron
Pfam	UHGV-0225568_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0225568_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0225568_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_39	phrog_12206	40.3	0.000000000048	N/A	unknown function
structural_annotation	UHGV-0225568_39	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_42	phrog_6058	54.4	0.0000000000000013	N/A	unknown function
UniRef90	UHGV-0225568_42	UniRef90_A0A2V1JQ38	63.2	0.0000000000636	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0225568_42	742733.HMPREF9469_05094	61.2	0.0000000000606	N/A	N/A
structural_annotation	UHGV-0225568_47	NF001645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0225568_48	UniRef90_R6RDX0	79.0	5.26e-18	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0225568_49	phrog_155	145.5	3.09687e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0225568_49	UniRef90_A0A1V5UPJ3	184.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0225568_49	386415.NT01CX_2192	174.0	0	ERF superfamily	N/A
Pfam	UHGV-0225568_49	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0225568_49	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_50	K03111	131.7	8.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0225568_50	phrog_44	141.4	5.5001e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0225568_50	UniRef90_A0A412ELG8	244.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0225568_50	658655.HMPREF0988_02584	174.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0225568_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0225568_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0225568_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0225568_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0225568_50	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_51	phrog_3490	144.8	4.30199e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0225568_51	UniRef90_A0A395XB48	325.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_51	357809.Cphy_2986	218.0	0	N/A	N/A
Pfam	UHGV-0225568_51	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0225568_51	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_52	K02316	62.7	6e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0225568_52	phrog_11992	156.3	0	N/A	unknown function
UniRef90	UHGV-0225568_52	UniRef90_A0A395X7I4	310.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0225568_52	476272.RUMHYD_01741	182.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0225568_52	drt-UG29	53.8	0.0000000000000017	DRT	DRT
Pfam	UHGV-0225568_52	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0225568_52	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0225568_52	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_53	phrog_8841	551.5	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0225568_53	UniRef90_A0A412EL97	1227.0	0	N/A	N/A
eggNOG-mapper	UHGV-0225568_53	476272.RUMHYD_01742	770.0	0	N/A	N/A
Pfam	UHGV-0225568_53	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0225568_53	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0225568_53	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_53	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_54	NF010187	N/A	N/A	N/A	N/A
UniRef90	UHGV-0225568_55	UniRef90_A0A6L8SWV5	174.0	0	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0225568_55	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0225568_55	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0225568_55	PF01726,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0225568_58	K19779	54.1	0.0000000000000025	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0225568_58	phrog_599	55.7	0.0000000000000012	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0225568_58	UniRef90_A0A317UED7	117.0	2.72e-33	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0225568_58	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0225568_58	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0225568_58	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0225568_58	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_59	PF17888	N/A	N/A	N/A	N/A
PHROG	UHGV-0225568_63	phrog_20593	93.6	1.3e-27	N/A	unknown function
AcrCatalog	UHGV-0225568_63	cluster_27421	32.3	0.000176	NA	N/A
PHROG	UHGV-0225568_64	phrog_8684	102.4	1.4e-30	N/A	unknown function
UniRef90	UHGV-0225568_64	UniRef90_A0A3A6GQT2	190.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0225568_64	457412.RSAG_01162	97.8	6.12e-24	YopX protein	N/A
Pfam	UHGV-0225568_64	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0225568_64	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0225568_64	PF09643,TIGR01671	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0225568_65	PF06107,COG4481	N/A	N/A	N/A	N/A