UHGV-0233839 (vOTU-167026)

Viral Genome: UHGV-0233839

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0233839
vOTU ID	vOTU-167026
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_11580_round1256~2666756
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.62 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9751
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.72
Jumbo phage	No

Genome content
Genome length (bp)	33,133
GC content	45.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	92%
Average CDS length (bps)	725.36
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0233839_1	K01447	57.8	2.2e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0233839_1	phrog_7698	163.8	0	endolysin	lysis
UniRef90	UHGV-0233839_1	UniRef90_A0A5R9MKH3	514.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0233839_1	877411.JMMA01000002_gene2384	192.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0233839_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0233839_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0233839_1	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_2	phrog_199	84.6	1.2e-24	holin	lysis
UniRef90	UHGV-0233839_2	UniRef90_A0A5R9MH90	267.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0233839_2	887325.HMPREF0381_0407	172.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0233839_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0233839_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0233839_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0233839_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_6	phrog_6616	51.9	1.3e-24	tail protein	tail
eggNOG-mapper	UHGV-0233839_6	1160721.RBI_II00526	701.0	0	N/A	N/A
structural_annotation	UHGV-0233839_6	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_7	phrog_1194	91.6	6.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0233839_7	1160721.RBI_II00527	207.0	0	N/A	N/A
structural_annotation	UHGV-0233839_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_8	phrog_1535	271.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0233839_8	UniRef90_R6TDK7	1270.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0233839_8	1226322.HMPREF1545_00059	426.0	0	tape measure	N/A
COG	UHGV-0233839_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0233839_8	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_9	phrog_706	144.5	6.50202e-43	N/A	unknown function
UniRef90	UHGV-0233839_9	UniRef90_UPI001B3C82AE	215.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0233839_9	1449050.JNLE01000003_gene3882	197.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0233839_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0233839_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_10	phrog_11299	185.0	0	N/A	unknown function
structural_annotation	UHGV-0233839_10	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_11	phrog_3099	148.9	2.52234e-44	N/A	unknown function
eggNOG-mapper	UHGV-0233839_11	1160721.RBI_II00532	205.0	0	N/A	N/A
structural_annotation	UHGV-0233839_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_12	phrog_3266	123.3	1.2e-36	tail completion	connector
eggNOG-mapper	UHGV-0233839_12	411902.CLOBOL_00130	112.0	1.53e-29	N/A	N/A
structural_annotation	UHGV-0233839_12	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_13	phrog_556	119.9	1e-35	minor head protein	head and packaging
UniRef90	UHGV-0233839_13	UniRef90_A0A1M7NJ72	122.0	8.21e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0233839_13	1449050.JNLE01000003_gene3886	108.0	4.66e-28	N/A	N/A
Pfam	UHGV-0233839_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0233839_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_14	phrog_3366	76.9	2.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0233839_14	1449050.JNLE01000003_gene3887	82.8	7.73e-19	N/A	N/A
Pfam	UHGV-0233839_14	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0233839_14	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_15	phrog_541	93.2	2.2e-27	head-tail adaptor	connector
UniRef90	UHGV-0233839_15	UniRef90_A0A371AQT0	103.0	4.98e-26	N/A	N/A
eggNOG-mapper	UHGV-0233839_15	1304866.K413DRAFT_3039	94.7	2e-23	N/A	N/A
PHROG	UHGV-0233839_16	phrog_544	345.6	0	major head protein	head and packaging
UniRef90	UHGV-0233839_16	UniRef90_R6T873	664.0	0	Major head protein	N/A
eggNOG-mapper	UHGV-0233839_16	936580.HMPREF1516_0718	316.0	0	N/A	N/A
NCBIFam	UHGV-0233839_16	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0233839_16	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_17	phrog_194	100.7	1.8e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0233839_17	UniRef90_R6U550	374.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0233839_17	742765.HMPREF9457_02126	151.0	9.24857e-44	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0233839_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0233839_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_19	phrog_581	335.6	0	minor head protein	head and packaging
UniRef90	UHGV-0233839_19	UniRef90_UPI00189CAB20	1194.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0233839_19	658655.HMPREF0988_02563	410.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0233839_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0233839_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233839_19	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_20	phrog_533	348.0	0	portal protein	head and packaging
UniRef90	UHGV-0233839_20	UniRef90_R6TDI6	881.0	0	Phage portal protein SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0233839_20	1304866.K413DRAFT_3035	442.0	0	N/A	N/A
structural_annotation	UHGV-0233839_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_21	K06909	419.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0233839_21	phrog_18557	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0233839_21	UniRef90_A0A1C6IMR2	1097.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0233839_21	411461.DORFOR_01162	667.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0233839_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0233839_21	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0233839_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0233839_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0233839_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0233839_23	UniRef90_A0A5R9MHA3	237.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0233839_23	875454.BAEW01000002_gene486	51.6	0.00000386	N/A	N/A
PHROG	UHGV-0233839_24	phrog_25754	84.6	5.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0233839_24	97139.C824_00736	86.3	2.04e-21	N/A	N/A
structural_annotation	UHGV-0233839_24	PF18195,MF_00257,NF041655,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_25	phrog_986	81.1	1.2e-23	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233839_25	UniRef90_A0A373XQS7	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0233839_25	2754.EH55_06950	67.0	0.000000000000391	N/A	N/A
Pfam	UHGV-0233839_25	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0233839_25	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_26	K01160	40.1	0.000000000091	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0233839_26	phrog_140	90.6	2e-26	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233839_26	UniRef90_A0A373Y8T3	259.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0233839_26	411462.DORLON_00806	194.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0233839_26	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0233839_26	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0233839_26	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_27	K07505	435.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0233839_27	phrog_2597	1193.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233839_27	UniRef90_A0A1C6E992	1498.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0233839_27	394503.Ccel_3304	1025.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0233839_27	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0233839_27	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0233839_27	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0233839_27	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_28	K17677	346.4	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0233839_28	phrog_16	282.8	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233839_28	UniRef90_A0A1C6E943	1038.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-0233839_28	1235792.C808_05388	814.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0233839_28	mREase_IV_00005	122.5	4e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0233839_28	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0233839_28	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0233839_28	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0233839_28	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_29	phrog_2698	193.0	0	N/A	unknown function
UniRef90	UHGV-0233839_29	UniRef90_UPI001D0882DA	235.0	0	N/A	N/A
eggNOG-mapper	UHGV-0233839_29	742723.HMPREF9477_00927	164.0	0	N/A	N/A
structural_annotation	UHGV-0233839_29	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_30	phrog_124	241.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233839_30	UniRef90_UPI000F52E538	474.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0233839_30	1235792.C808_05390	425.0	0	AAA domain	N/A
Pfam	UHGV-0233839_30	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0233839_30	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_31	K03546	60.3	2.5e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0233839_31	phrog_1499	472.0	0	N/A	unknown function
UniRef90	UHGV-0233839_31	UniRef90_A0A1C6E8X2	756.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0233839_31	641112.ACOK01000073_gene2873	524.0	0	domain protein	N/A
Pfam	UHGV-0233839_31	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0233839_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0233839_31	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233839_35	PF11372	N/A	N/A	N/A	N/A
UniRef90	UHGV-0233839_37	UniRef90_R6TEQ2	142.0	2.67648e-43	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0233839_37	246199.CUS_5910	120.0	4.55e-35	N/A	N/A
structural_annotation	UHGV-0233839_37	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_38	K01356	122.4	5.8e-36	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0233839_38	phrog_4	134.0	1.3e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-0233839_38	UniRef90_R6T2B0	431.0	0	Peptidase S24-like protein	N/A
eggNOG-mapper	UHGV-0233839_38	246199.CUS_5911	233.0	0	N/A	N/A
Pfam	UHGV-0233839_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-0233839_38	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0233839_38	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0233839_38	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0233839_39	phrog_10292	54.8	3.8e-16	N/A	unknown function
UniRef90	UHGV-0233839_39	UniRef90_R6T9F1	270.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0233839_39	537013.CLOSTMETH_02269	85.1	2.2e-19	TM2 domain	N/A
Pfam	UHGV-0233839_39	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0233839_39	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0233839_40	K07449	139.4	9.99967e-42	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0233839_40	phrog_19856	59.8	3.3e-17	N/A	unknown function
UniRef90	UHGV-0233839_40	UniRef90_A0A356CZV8	473.0	0	Mrr_cat domain-containing protein	N/A
eggNOG-mapper	UHGV-0233839_40	697329.Rumal_1169	167.0	0	Restriction endonuclease	N/A
PADLOC	UHGV-0233839_40	ZorD1_00005	72.9	3e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0233839_40	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0233839_40	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0233839_41	K14059	250.9	0	int; integrase	N/A
PHROG	UHGV-0233839_41	phrog_1	211.5	0	integrase	integration and excision
UniRef90	UHGV-0233839_41	UniRef90_A0A1C6FGR9	749.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0233839_41	1408823.AXUS01000024_gene2685	172.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0233839_41	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0233839_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0233839_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0233839_41	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0233839_42	1160721.RBI_II00383	384.0	0	N/A	N/A