UHGV-0233932 (vOTU-130594)

Viral Genome: UHGV-0233932

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0233932
vOTU ID	vOTU-130594
Representative Genome?	Yes
Source	CHVD
Original genome ID	SRS147653_a1_ct4477_vs1@Siphoviridae__sp._ctuDz1
Associated BioSample	SAMN00146870
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.15 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9781
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.54
Jumbo phage	No

Genome content
Genome length (bp)	33,088
GC content	50.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	92%
Average CDS length (bps)	477.19
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.15)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0233932_2	K19304	118.6	7.2e-35	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0233932_2	phrog_14988	82.2	7.6e-24	peptidase	other
UniRef90	UHGV-0233932_2	UniRef90_UPI0019599082	309.0	0	M23 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0233932_2	1449126.JQKL01000026_gene2423	97.4	1.12e-20	G5	N/A
Pfam	UHGV-0233932_2	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0233932_2	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0233932_2	PF01551,NF040883	N/A	N/A	N/A	N/A
UniRef90	UHGV-0233932_3	UniRef90_UPI00102F4BEE	50.4	0.00000865	CTP synthase	N/A
eggNOG-mapper	UHGV-0233932_3	1042156.CXIVA_01580	62.8	0.0000000000477	N/A	N/A
PHROG	UHGV-0233932_4	phrog_13256	51.5	0.000000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0233932_4	1226322.HMPREF1545_00166	53.9	0.0000000106	N/A	N/A
KOfam	UHGV-0233932_5	K07692	43.9	0.0000000000038	degU; two-component system, NarL family, response regulator DegU	N/A
Pfam	UHGV-0233932_5	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0233932_5	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
eggNOG-mapper	UHGV-0233932_6	78345.BMERY_0692	66.6	0.00000000000128	N/A	N/A
structural_annotation	UHGV-0233932_6	PF07825,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_8	phrog_3754	92.3	5.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0233932_8	476272.RUMHYD_01764	154.0	0	N/A	N/A
PHROG	UHGV-0233932_9	phrog_21718	82.7	5.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0233932_9	397290.C810_05210	65.5	0.00000000000604	N/A	N/A
PHROG	UHGV-0233932_10	phrog_22984	75.8	3.1e-23	N/A	unknown function
PHROG	UHGV-0233932_11	phrog_16490	181.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0233932_11	1408437.JNJN01000043_gene803	80.5	0.00000000000000299	N/A	N/A
PHROG	UHGV-0233932_12	phrog_20016	194.7	0	N/A	unknown function
UniRef90	UHGV-0233932_12	UniRef90_A0A285PT46	194.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0233932_12	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-0233932_12	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233932_13	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0233932_14	1226322.HMPREF1545_00079	69.3	0.000000000000114	N/A	N/A
KOfam	UHGV-0233932_16	K14059	169.7	0	int; integrase	N/A
PHROG	UHGV-0233932_16	phrog_1	161.5	0	integrase	integration and excision
UniRef90	UHGV-0233932_16	UniRef90_UPI001F166C84	423.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0233932_16	748224.HMPREF9436_03382	266.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0233932_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0233932_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0233932_16	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0233932_17	1408323.JQKK01000005_gene152	69.7	0.00000000012	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
structural_annotation	UHGV-0233932_20	PF10007,MF_01819,TIGR03433,COG1733	N/A	N/A	N/A	N/A
KOfam	UHGV-0233932_22	K22300	49.0	0.00000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0233932_22	phrog_8	52.2	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0233932_22	UniRef90_A0A810PZI0	78.6	6.47e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_22	693746.OBV_25500	58.2	0.000000000136	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0233932_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0233932_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0233932_22	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0233932_23	UniRef90_A0A367GIH6	84.3	3.07e-19	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0233932_23	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0233932_23	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233932_24	PF17259	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_25	phrog_5070	188.4	0	N/A	unknown function
UniRef90	UHGV-0233932_25	UniRef90_A0A174CB23	126.0	3.05e-32	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-0233932_25	665950.HMPREF1025_02555	120.0	7.9e-31	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0233932_25	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0233932_25	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0233932_25	NF040481	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_28	phrog_155	154.9	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233932_28	UniRef90_UPI0018978832	176.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0233932_28	1289595.M1Q0X6_9VIRU	166.0	0	ERF superfamily	N/A
Pfam	UHGV-0233932_28	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0233932_28	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_29	phrog_72	44.8	0.00000000000091	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233932_29	UniRef90_UPI000C7BF263	103.0	6.81e-25	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0233932_29	445972.ANACOL_01825	119.0	2e-31	N/A	N/A
structural_annotation	UHGV-0233932_29	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_30	phrog_7566	57.4	2.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0233932_30	1507.HMPREF0262_00433	52.4	0.000000185	N/A	N/A
KOfam	UHGV-0233932_31	K03111	139.2	4.69996e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0233932_31	phrog_44	148.5	3.64338e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233932_31	UniRef90_A0A1Q6T150	178.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0233932_31	411471.SUBVAR_04646	173.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0233932_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0233932_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0233932_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0233932_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0233932_31	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0233932_32	1203606.HMPREF1526_00240	153.0	0	N/A	N/A
PHROG	UHGV-0233932_33	phrog_4973	63.4	3.4e-18	N/A	unknown function
UniRef90	UHGV-0233932_33	UniRef90_A0A3D3Y5F2	67.4	0.000000000000333	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0233932_33	584708.Apau_1668	49.7	0.000000992	Helix-turn-helix domain	N/A
Pfam	UHGV-0233932_33	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0233932_33	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_34	phrog_15768	99.1	5.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0233932_34	886379.AEWI01000001_gene1766	175.0	0	N/A	N/A
structural_annotation	UHGV-0233932_34	PF09681,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0233932_35	K02314	208.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0233932_35	phrog_19	193.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233932_35	UniRef90_A0A1Y4J2T6	216.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_35	1226322.HMPREF1545_00095	137.0	1.57e-33	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0233932_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0233932_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0233932_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0233932_35	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_38	phrog_9298	312.3	0	radical SAM domain protein	other
UniRef90	UHGV-0233932_38	UniRef90_A0A6L5TFB3	541.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0233932_38	1235798.C817_05514	323.0	0	N/A	N/A
COG	UHGV-0233932_38	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0233932_38	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-0233932_39	K01160	58.3	2.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0233932_39	phrog_34	64.0	2.7e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0233932_39	UniRef90_UPI0018ABA1B6	151.0	1.12104e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0233932_39	875454.BAEW01000002_gene491	108.0	9.2e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0233932_39	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0233932_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0233932_39	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0233932_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0233932_40	PF01381,PF08667,MF_00535,NF041951,NF007408,COG1476,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_44	phrog_9958	116.8	1.4e-34	N/A	unknown function
UniRef90	UHGV-0233932_44	UniRef90_UPI001D08A241	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0233932_44	1160721.RBI_I01591	127.0	1.28e-34	N/A	N/A
structural_annotation	UHGV-0233932_44	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_46	phrog_7704	42.8	0.0000000000077	N/A	unknown function
UniRef90	UHGV-0233932_46	UniRef90_A0A4R4IL87	56.2	0.0000000202	N/A	N/A
Pfam	UHGV-0233932_46	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-0233932_46	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0233932_46	PF04448	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_48	phrog_36	61.8	1.5e-17	transcriptional regulator	transcription regulation
COG	UHGV-0233932_48	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0233932_48	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_49	phrog_606	91.9	6.9e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0233932_49	UniRef90_UPI00195648BB	176.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0233932_49	397290.C810_05185	147.0	5.01665e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-0233932_49	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0233932_49	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0233932_50	K06909	398.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0233932_50	phrog_3717	160.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0233932_50	UniRef90_UPI001C3B9235	626.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0233932_50	411471.SUBVAR_06507	570.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0233932_50	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0233932_50	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0233932_50	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0233932_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0233932_50	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_51	phrog_64	171.9	0	portal protein	head and packaging
UniRef90	UHGV-0233932_51	UniRef90_UPI0018A8A301	613.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0233932_51	673376.F2VHW1_9CAUD	213.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0233932_51	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0233932_51	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_52	phrog_8680	234.4	0	N/A	unknown function
UniRef90	UHGV-0233932_52	UniRef90_UPI00189ACAD3	305.0	0	N/A	N/A
eggNOG-mapper	UHGV-0233932_52	411470.RUMGNA_02208	213.0	0	N/A	N/A
Pfam	UHGV-0233932_52	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0233932_52	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_54	phrog_595	101.1	1.4e-29	head maturation protease	head and packaging
UniRef90	UHGV-0233932_54	UniRef90_A0A7X5E1T7	415.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_54	1504822.CCNO01000013_gene286	178.0	1.4013e-45	cell adhesion	N/A
Pfam	UHGV-0233932_54	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0233932_54	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233932_54	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_55	phrog_5	81.2	1.9e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0233932_55	UniRef90_UPI001411BC8C	188.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0233932_55	1540257.JQMW01000009_gene3375	92.0	6.35e-22	N/A	N/A
Pfam	UHGV-0233932_55	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0233932_55	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0233932_55	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_56	phrog_478	123.7	8.6e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0233932_56	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_56	1111121.HMPREF1247_0834	98.2	1.49e-24	N/A	N/A
UniRef90	UHGV-0233932_57	UniRef90_A0A6B9SU02	75.9	0.000000000000204	Fibronectin autolysin	N/A
structural_annotation	UHGV-0233932_57	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_58	phrog_544	119.3	3.8e-35	major head protein	head and packaging
UniRef90	UHGV-0233932_58	UniRef90_A0A1C6B5R0	336.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_58	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-0233932_58	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_60	phrog_17977	85.3	4.8e-25	N/A	unknown function
UniRef90	UHGV-0233932_60	UniRef90_A0A285PT57	90.5	4.15e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-0233932_60	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0233932_61	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_62	phrog_885	71.2	1.2e-20	major tail protein	tail
UniRef90	UHGV-0233932_62	UniRef90_A0A843J9F0	179.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0233932_62	1504822.CCNO01000012_gene492	209.0	0	N/A	N/A
structural_annotation	UHGV-0233932_62	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0233932_63	phrog_18646	49.9	0.000000000000041	N/A	unknown function