UHGV-0239452 (vOTU-086760)

Viral Genome: UHGV-0239452

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0239452
vOTU ID	vOTU-086760
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR8187104_141_297994_round1256~1321192
Associated BioSample	SAMN10416751
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9671
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - plasmid or chromosomal
viralVerify score	1.84
Jumbo phage	No

Genome content
Genome length (bp)	40,073
GC content	27.59%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	90%
Average CDS length (bps)	549.05
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0239452_1	PF21531,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_3	phrog_253	141.7	3.80032e-42	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_3	UniRef90_UPI00051BDF29	156.0	1.4013e-45	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0239452_3	97138.C820_00779	149.0	1.34525e-43	Siphovirus Gp157	N/A
Pfam	UHGV-0239452_3	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0239452_3	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_5	phrog_314	69.9	5.2e-20	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_5	UniRef90_A0A3R6RDR5	108.0	9.93e-26	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0239452_5	1589270.A0A0B5A5V6_9CAUD	103.0	9.14e-25	endonuclease activity	N/A
Pfam	UHGV-0239452_5	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0239452_5	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_6	phrog_2872	206.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_6	UniRef90_UPI00051AF781	264.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0239452_6	1449050.JNLE01000005_gene3946	264.0	0	AAA domain	N/A
structural_annotation	UHGV-0239452_6	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_7	phrog_18107	144.3	7.80523e-43	N/A	unknown function
UniRef90	UHGV-0239452_7	UniRef90_R6I207	161.0	0	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0239452_7	1232453.BAIF02000010_gene3338	117.0	1.37e-30	N/A	N/A
Pfam	UHGV-0239452_7	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0239452_7	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0239452_8	K02316	94.1	1.9e-27	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0239452_8	phrog_11992	92.4	9.1e-28	N/A	unknown function
UniRef90	UHGV-0239452_8	UniRef90_R6HDT3	309.0	0	DNA primase (Bacterial type)	N/A
eggNOG-mapper	UHGV-0239452_8	1151292.QEW_1858	89.7	2.42e-18	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0239452_8	drt-cluster192	60.7	3.6e-17	DRT	DRT
Pfam	UHGV-0239452_8	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0239452_8	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0239452_8	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_9	phrog_8841	471.6	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_9	UniRef90_UPI0006936C9D	430.0	0	N/A	N/A
eggNOG-mapper	UHGV-0239452_9	903814.ELI_3221	336.0	0	N/A	N/A
Pfam	UHGV-0239452_9	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0239452_9	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0239452_9	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0239452_9	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0239452_10	PF10957	N/A	N/A	N/A	N/A
KOfam	UHGV-0239452_12	K17677	408.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0239452_12	phrog_16	242.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_12	UniRef90_R6I211	972.0	0	DNA or RNA helicases of superfamily II	N/A
eggNOG-mapper	UHGV-0239452_12	742738.HMPREF9460_02499	585.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0239452_12	mREase_IV_00005	108.8	5.1e-32	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0239452_12	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0239452_12	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0239452_12	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0239452_12	PF04851,PF16203,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_13	phrog_843	43.8	0.000000000003	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239452_13	UniRef90_R6H309	268.0	0	Holliday junction resolvase RecU	N/A
Pfam	UHGV-0239452_13	PF03838	N/A	N/A	Recombination protein U	RecU
structural_annotation	UHGV-0239452_13	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_31	phrog_2538	89.0	4.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-0239452_31	UniRef90_A0A1Q6LGU3	223.0	0	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0239452_31	1232430.CAVG010000114_gene1028	63.5	0.0000000000205	N/A	N/A
Pfam	UHGV-0239452_31	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
structural_annotation	UHGV-0239452_31	PF13022,COG3677	N/A	N/A	N/A	N/A
KOfam	UHGV-0239452_32	K06909	69.3	7.2e-20	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0239452_32	phrog_2	65.0	2e-18	terminase large subunit	head and packaging
UniRef90	UHGV-0239452_32	UniRef90_A0A1Q6LGZ0	910.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0239452_32	552396.HMPREF0863_01628	533.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0239452_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0239452_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0239452_32	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_33	phrog_533	234.5	0	portal protein	head and packaging
UniRef90	UHGV-0239452_33	UniRef90_R7FBF4	778.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0239452_33	1294142.CINTURNW_1024	461.0	0	N/A	N/A
structural_annotation	UHGV-0239452_33	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_34	phrog_581	218.3	0	minor head protein	head and packaging
UniRef90	UHGV-0239452_34	UniRef90_A0A8G1TMC4	300.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0239452_34	33035.JPJF01000093_gene2255	276.0	0	N/A	N/A
Pfam	UHGV-0239452_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0239452_34	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0239452_34	PF06152,PF03496,NF041404	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0239452_36	693746.OBV_28270	78.2	1.4e-18	N/A	N/A
NCBIFam	UHGV-0239452_36	NF041551.1	N/A	N/A	YlcI/YnfO family protein	N/A
PHROG	UHGV-0239452_37	phrog_4980	199.6	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0239452_37	UniRef90_A0A1Q6LGX4	249.0	0	PASTA domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0239452_37	1410674.JNKU01000005_gene1524	129.0	2.39e-34	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0239452_37	PF03793	N/A	N/A	PASTA domain	PASTA
Pfam	UHGV-0239452_37	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0239452_37	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0239452_37	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_38	phrog_10292	43.3	0.0000000000038	N/A	unknown function
UniRef90	UHGV-0239452_38	UniRef90_A0A3D2MBJ3	154.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0239452_38	665956.HMPREF1032_00562	139.0	4.16003e-41	TM2 domain	N/A
Pfam	UHGV-0239452_38	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0239452_38	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0239452_38	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0239452_38	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_40	phrog_422	275.3	0	major head protein	head and packaging
UniRef90	UHGV-0239452_40	UniRef90_A0A1Q6LIQ2	596.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0239452_40	663278.Ethha_1589	408.0	0	N/A	N/A
structural_annotation	UHGV-0239452_40	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_42	phrog_541	68.9	7.5e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0239452_42	552396.HMPREF0863_01637	68.2	0.000000000000465	N/A	N/A
PHROG	UHGV-0239452_43	phrog_8710	106.4	1.8e-31	N/A	unknown function
eggNOG-mapper	UHGV-0239452_43	1391647.AVSV01000003_gene1811	79.7	7.99e-18	N/A	N/A
structural_annotation	UHGV-0239452_43	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_44	phrog_556	43.7	0.0000000000049	minor head protein	head and packaging
eggNOG-mapper	UHGV-0239452_44	585501.HMPREF6123_0831	90.9	6.39e-22	N/A	N/A
PHROG	UHGV-0239452_45	phrog_2595	70.8	1.7e-20	head-tail connector protein	connector
UniRef90	UHGV-0239452_45	UniRef90_UPI0016BCEC89	68.9	0.00000000000241	minor capsid protein	N/A
eggNOG-mapper	UHGV-0239452_45	1151292.QEW_2427	70.1	0.000000000000144	N/A	N/A
Pfam	UHGV-0239452_45	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0239452_45	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_46	phrog_820	111.6	4.3e-33	major tail protein	tail
eggNOG-mapper	UHGV-0239452_46	33035.JPJF01000093_gene2246	201.0	0	N/A	N/A
structural_annotation	UHGV-0239452_46	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_47	phrog_8300	69.0	7.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0239452_47	1123263.AUKY01000051_gene1073	78.2	1.93e-17	N/A	N/A
structural_annotation	UHGV-0239452_47	PF06896	N/A	N/A	N/A	N/A
UniRef90	UHGV-0239452_48	UniRef90_UPI0018CC7D50	77.0	1.78e-16	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0239452_48	394503.Ccel_3036	78.2	1.49e-17	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0239452_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0239452_48	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-0239452_50	UniRef90_R7F982	66.6	0.000000000000122	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0239452_50	573061.Clocel_0220	60.1	0.00000000000863	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0239452_50	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_51	phrog_1535	279.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0239452_51	UniRef90_A0A1C5PIN9	420.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0239452_51	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-0239452_51	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0239452_51	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_52	phrog_1194	111.3	5.5e-33	N/A	unknown function
UniRef90	UHGV-0239452_52	UniRef90_R7F8R7	189.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0239452_52	1280692.AUJL01000027_gene2149	115.0	8.45e-32	N/A	N/A
Pfam	UHGV-0239452_52	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0239452_52	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_53	phrog_6616	64.0	1.4e-18	tail protein	tail
eggNOG-mapper	UHGV-0239452_53	1449343.JQLQ01000002_gene1509	58.2	0.000000315	N/A	N/A
COG	UHGV-0239452_53	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0239452_54	phrog_5555	90.4	1.1e-26	tail protein	tail
UniRef90	UHGV-0239452_54	UniRef90_R7F857	538.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0239452_54	272562.CA_C0063	112.0	1.4e-23	Prophage endopeptidase tail	N/A
COG	UHGV-0239452_54	COG4926	N/A	N/A	Phage-related protein	N/A
eggNOG-mapper	UHGV-0239452_56	1230342.CTM_17037	56.6	0.000000347	Siphovirus ReqiPepy6 Gp37-like protein	N/A
structural_annotation	UHGV-0239452_56	PF18463,TIGR02215	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_58	phrog_937	40.2	0.000000000064	hemolysin	other
eggNOG-mapper	UHGV-0239452_58	397290.C810_03256	52.0	0.000000383	N/A	N/A
PHROG	UHGV-0239452_59	phrog_18955	51.9	0.0000000000000066	N/A	unknown function
UniRef90	UHGV-0239452_59	UniRef90_R7FGU9	843.0	0	Peptidoglycan-binding domain 1 protein	N/A
eggNOG-mapper	UHGV-0239452_59	1121422.AUMW01000009_gene3264	105.0	4.28e-23	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0239452_59	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0239452_59	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0239452_59	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-0239452_59	PF03412,PF08239,PF18341,NF040678,NF033920,COG4991,COG4990	N/A	N/A	N/A	N/A
UniRef90	UHGV-0239452_61	UniRef90_R6I264	116.0	1.05e-32	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0239452_61	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0239452_61	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0239452_61	PF01381,NF010465,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0239452_63	K01537	1049.0	0	ATP2C; P-type Ca2+ transporter type 2C [EC:7.2.2.10]	N/A
PHROG	UHGV-0239452_63	phrog_12316	712.7	0	ATPase	other
UniRef90	UHGV-0239452_63	UniRef90_A0A1Q6L406	1620.0	0	ATPase	N/A
eggNOG-mapper	UHGV-0239452_63	526218.Sterm_0188	963.0	0	N/A	N/A
Pfam	UHGV-0239452_63	PF00690	N/A	N/A	Cation transporter/ATPase, N-terminus	Cation_ATPase_N
Pfam	UHGV-0239452_63	PF00122	N/A	N/A	E1-E2 ATPase	E1-E2_ATPase
Pfam	UHGV-0239452_63	PF00702	N/A	N/A	haloacid dehalogenase-like hydrolase	Hydrolase
Pfam	UHGV-0239452_63	PF00689	N/A	N/A	Cation transporting ATPase, C-terminus	Cation_ATPase_C
NCBIFam	UHGV-0239452_63	TIGR01494.1	N/A	N/A	HAD-IC family P-type ATPase	N/A
COG	UHGV-0239452_63	COG0474	N/A	N/A	Magnesium-transporting ATPase (P-type)	N/A
structural_annotation	UHGV-0239452_63	PF00122,PF00689,PF00702,MF_00285,TIGR01522,COG0474	N/A	N/A	N/A	N/A
PHROG	UHGV-0239452_64	phrog_582	42.6	0.000000000012	Arc-like repressor	transcription regulation
UniRef90	UHGV-0239452_64	UniRef90_R7LUL5	119.0	6.29e-34	Arc domain-containing protein	N/A
Pfam	UHGV-0239452_64	PF03869	N/A	N/A	Arc-like DNA binding domain	Arc