UHGV-0244283 (vOTU-002026)

Viral Genome: UHGV-0244283

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0244283
vOTU ID	vOTU-002026
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR8133873_141_24892_round1256~809723
Associated BioSample	SAMN10342688
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9769
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.69
Jumbo phage	No

Genome content
Genome length (bp)	38,336
GC content	46.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	670.85
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0244283_1	K22300	67.2	3.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0244283_1	phrog_8	66.8	4.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244283_1	UniRef90_A0A396Q2Z0	177.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0244283_1	478749.BRYFOR_07570	95.5	3.16e-22	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0244283_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0244283_1	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0244283_1	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_2	phrog_87	82.4	4.4e-24	metallo-protease	other
UniRef90	UHGV-0244283_2	UniRef90_UPI0015D3F2DD	234.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0244283_2	1256908.HMPREF0373_00642	223.0	0	Zn peptidase	N/A
Pfam	UHGV-0244283_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0244283_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0244283_2	PF06114,COG2856	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0244283_3	457412.RSAG_01053	158.0	0	N/A	N/A
KOfam	UHGV-0244283_4	K07448	138.7	3.09995e-41	mrr; restriction system protein	N/A
PHROG	UHGV-0244283_4	phrog_13700	54.3	0.0000000000000014	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0244283_4	UniRef90_A0A1C5VRQ1	324.0	0	Stage III sporulation protein E	N/A
eggNOG-mapper	UHGV-0244283_4	1235790.C805_00010	155.0	3.22999e-41	Restriction endonuclease	N/A
PADLOC	UHGV-0244283_4	ZorD1_00005	67.1	1.9e-19	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0244283_4	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-0244283_4	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
Pfam	UHGV-0244283_4	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0244283_4	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
PHROG	UHGV-0244283_5	phrog_16228	216.2	0	N/A	unknown function
UniRef90	UHGV-0244283_5	UniRef90_A0A413HZK0	313.0	0	Uma2 family endonuclease	N/A
eggNOG-mapper	UHGV-0244283_5	1121115.AXVN01000006_gene2178	304.0	0	Putative restriction endonuclease	N/A
Pfam	UHGV-0244283_5	PF05685	N/A	N/A	Putative restriction endonuclease	Uma2
COG	UHGV-0244283_5	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0244283_5	PF05685,COG4636	N/A	N/A	N/A	N/A
KOfam	UHGV-0244283_6	K06400	331.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0244283_6	phrog_95	339.2	0	integrase	integration and excision
UniRef90	UHGV-0244283_6	UniRef90_A0A413HZR4	662.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0244283_6	97139.C824_05947	499.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0244283_6	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0244283_6	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0244283_6	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0244283_6	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0244283_6	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_7	phrog_14030	88.1	1.2e-29	N/A	unknown function
UniRef90	UHGV-0244283_7	UniRef90_A5ZQ15	742.0	0	Putative peptidoglycan binding domain protein	N/A
eggNOG-mapper	UHGV-0244283_7	411459.RUMOBE_01085	742.0	0	N/A	N/A
Pfam	UHGV-0244283_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0244283_7	PF01471,PF01374,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_8	phrog_1129	76.2	2.7e-22	holin	lysis
UniRef90	UHGV-0244283_8	UniRef90_UPI00051B7422	151.0	1.4013e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0244283_8	1232453.BAIF02000013_gene3227	150.0	0	N/A	N/A
Pfam	UHGV-0244283_8	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0244283_8	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_9	phrog_4105	79.0	4.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-0244283_9	397288.C806_00115	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-0244283_11	457412.RSAG_01112	91.3	3.43e-16	N/A	N/A
PHROG	UHGV-0244283_12	phrog_16164	229.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0244283_12	457412.RSAG_01113	76.3	0.0000000000000943	N/A	N/A
structural_annotation	UHGV-0244283_12	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_13	phrog_6616	506.4	0	tail protein	tail
UniRef90	UHGV-0244283_13	UniRef90_A0A395X7B3	773.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244283_13	33035.JPJF01000043_gene1002	252.0	0	N/A	N/A
Pfam	UHGV-0244283_13	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0244283_13	PF05113,PF02010,NF033848,NF007392,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_14	phrog_1194	43.7	0.0000000000045	N/A	unknown function
structural_annotation	UHGV-0244283_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_15	phrog_1535	335.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0244283_15	UniRef90_UPI0003F4F1A1	212.0	0	membrane protein	N/A
eggNOG-mapper	UHGV-0244283_15	411459.RUMOBE_01384	258.0	0	phage tail tape measure protein	N/A
COG	UHGV-0244283_15	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0244283_15	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_16	phrog_706	109.4	1.7e-32	N/A	unknown function
UniRef90	UHGV-0244283_16	UniRef90_UPI001C0F2CC6	270.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0244283_16	411459.RUMOBE_01383	203.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0244283_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0244283_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_17	phrog_11299	99.9	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0244283_17	33035.JPJF01000106_gene3125	83.6	1.36e-18	N/A	N/A
structural_annotation	UHGV-0244283_17	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_18	phrog_3099	126.5	1.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-0244283_18	33035.JPJF01000106_gene3126	191.0	0	N/A	N/A
structural_annotation	UHGV-0244283_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_19	phrog_3266	102.4	3.2e-30	tail completion	connector
eggNOG-mapper	UHGV-0244283_19	663278.Ethha_0098	53.1	0.000000739	N/A	N/A
structural_annotation	UHGV-0244283_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_20	phrog_556	78.7	5.6e-23	minor head protein	head and packaging
UniRef90	UHGV-0244283_20	UniRef90_UPI00156EFCF3	211.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0244283_20	1449050.JNLE01000003_gene3886	69.7	0.000000000000515	N/A	N/A
Pfam	UHGV-0244283_20	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0244283_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_21	phrog_3366	101.3	8.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0244283_21	573061.Clocel_3539	52.8	0.00000085	N/A	N/A
Pfam	UHGV-0244283_21	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0244283_21	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_22	phrog_541	83.4	2.3e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-0244283_22	1304866.K413DRAFT_3039	59.3	0.00000000167	N/A	N/A
PHROG	UHGV-0244283_23	phrog_10	172.2	0	major head protein	head and packaging
UniRef90	UHGV-0244283_23	UniRef90_UPI00157128C8	573.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0244283_23	411461.DORFOR_00744	560.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0244283_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0244283_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0244283_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0244283_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_24	phrog_2303	117.7	1.1e-34	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0244283_24	411461.DORFOR_00745	171.0	0	N/A	N/A
structural_annotation	UHGV-0244283_24	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0244283_25	K07584	62.0	1.2e-17	N/A	N/A
PHROG	UHGV-0244283_25	phrog_4478	85.2	5e-25	peptidase	other
UniRef90	UHGV-0244283_25	UniRef90_UPI00156D7F8B	165.0	0	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0244283_25	411461.DORFOR_00746	114.0	5.48e-32	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0244283_25	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0244283_25	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244283_25	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_26	phrog_27009	105.5	2.7e-31	N/A	unknown function
PHROG	UHGV-0244283_27	phrog_581	303.4	0	minor head protein	head and packaging
UniRef90	UHGV-0244283_27	UniRef90_A0A413B1A6	726.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0244283_27	658655.HMPREF0988_02563	360.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0244283_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0244283_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244283_27	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_28	phrog_533	401.7	0	portal protein	head and packaging
UniRef90	UHGV-0244283_28	UniRef90_UPI001C0FB394	806.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0244283_28	411462.DORLON_00795	671.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0244283_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0244283_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0244283_29	K06909	212.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0244283_29	phrog_2	114.2	1.8e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0244283_29	UniRef90_UPI0018985A97	806.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0244283_29	411461.DORFOR_00750	742.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0244283_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0244283_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0244283_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0244283_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0244283_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_30	phrog_509	276.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0244283_30	UniRef90_UPI00189AF2D9	370.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0244283_30	552396.HMPREF0863_04210	266.0	0	DNA packaging	N/A
Pfam	UHGV-0244283_30	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0244283_30	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0244283_30	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244283_30	NF040601,COG5484	N/A	N/A	N/A	N/A
UniRef90	UHGV-0244283_31	UniRef90_A0A414I3F2	536.0	0	Haloacid dehalogenase-like hydrolase	N/A
eggNOG-mapper	UHGV-0244283_31	754027.HMPREF9554_02409	450.0	0	Phosphoserine phosphatase	N/A
COG	UHGV-0244283_31	COG0560	N/A	N/A	Phosphoserine phosphatase	N/A
structural_annotation	UHGV-0244283_31	PF06888,MF_01680,TIGR00338,COG0560	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_32	phrog_36	68.1	1.5e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244283_32	UniRef90_UPI001D089637	133.0	1.28e-37	N/A	N/A
eggNOG-mapper	UHGV-0244283_32	1304866.K413DRAFT_3028	160.0	0	N/A	N/A
structural_annotation	UHGV-0244283_32	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_36	phrog_424	77.4	1.9e-22	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0244283_36	UniRef90_A0A2H4JC51	504.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0244283_36	411461.DORFOR_01142	564.0	0	N/A	N/A
COG	UHGV-0244283_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0244283_40	phrog_9804	145.2	3.50325e-43	N/A	unknown function
UniRef90	UHGV-0244283_40	UniRef90_A0A6L5Y152	205.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0244283_40	585394.RHOM_14005	125.0	6.32e-34	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-0244283_40	cluster_137185	169.0	0	NA	N/A
Pfam	UHGV-0244283_40	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0244283_40	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_41	phrog_16304	122.5	3.6e-36	N/A	unknown function
UniRef90	UHGV-0244283_41	UniRef90_UPI001D074B07	119.0	2.03e-29	N/A	N/A
eggNOG-mapper	UHGV-0244283_41	33035.JPJF01000071_gene4467	109.0	3.25e-26	N/A	N/A
Pfam	UHGV-0244283_41	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0244283_41	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_42	phrog_72	68.0	8.7e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0244283_42	411468.CLOSCI_00314	135.0	1.43e-37	N/A	N/A
structural_annotation	UHGV-0244283_42	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_43	phrog_155	141.3	6.50062e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244283_43	UniRef90_UPI001EDDFED5	194.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0244283_43	929506.CbC4_1193	159.0	0	ERF superfamily	N/A
Pfam	UHGV-0244283_43	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0244283_43	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0244283_51	phrog_373	101.9	6.8e-30	anti-repressor	transcription regulation
UniRef90	UHGV-0244283_51	UniRef90_A0A373AA96	265.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-0244283_51	478749.BRYFOR_07645	194.0	0	Phage regulatory protein	N/A
Pfam	UHGV-0244283_51	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0244283_51	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0244283_51	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0244283_51	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0244283_52	UniRef90_A0A3S5FBF3	117.0	4.54e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0244283_52	478749.BRYFOR_07571	90.5	3.67e-23	N/A	N/A
structural_annotation	UHGV-0244283_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A