UHGV-0244949 (vOTU-115833)

Viral Genome: UHGV-0244949

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0244949
vOTU ID	vOTU-115833
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR10418032_141_6126_round1256~934414
Associated BioSample	SAMN13241759
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.13 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.87
Jumbo phage	No

Genome content
Genome length (bp)	20,934
GC content	53.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	91%
Average CDS length (bps)	465.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 52.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0244949_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0244949_1	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0244949_1	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0244949_2	1121423.JONT01000016_gene1171	63.9	0.0000000021	PFAM Metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0244949_2	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0244949_2	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0244949_2	PF02805	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244949_4	PF00227,MF_02113_A,TIGR03634,COG0638	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_5	phrog_8	56.3	8.4e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244949_5	UniRef90_A0A841ZWE6	66.2	0.00000000000931	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0244949_5	2325.TKV_c21810	59.7	0.000000000763	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0244949_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0244949_5	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_6	phrog_18248	60.7	2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244949_6	UniRef90_UPI001961971F	77.4	1.72e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0244949_6	696281.Desru_1067	68.9	0.000000000000114	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0244949_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0244949_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0244949_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_8	phrog_9562	41.9	0.000000000000072	N/A	unknown function
UniRef90	UHGV-0244949_8	UniRef90_UPI001957F223	156.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0244949_8	1226322.HMPREF1545_00011	55.1	0.000000793	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0244949_8	PF02985	N/A	N/A	HEAT repeat	HEAT
Pfam	UHGV-0244949_8	PF12765	N/A	N/A	HEAT repeat associated with sister chromatid cohesion	Cohesin_HEAT
Pfam	UHGV-0244949_8	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0244949_8	COG1357	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_9	phrog_253	94.6	1.1e-27	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_9	UniRef90_A0A1C5N4H2	164.0	0	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0244949_9	411470.RUMGNA_02192	97.1	2.09e-23	Siphovirus Gp157	N/A
Pfam	UHGV-0244949_9	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0244949_9	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_10	phrog_7838	119.8	2.6e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_10	UniRef90_A0A8D9UGW3	169.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0244949_10	742767.HMPREF9456_02052	140.0	6.31e-39	N/A	N/A
structural_annotation	UHGV-0244949_10	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_11	phrog_72	49.4	0.000000000000054	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_11	UniRef90_UPI001F3F3E5C	165.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0244949_11	445972.ANACOL_01825	119.0	1.3e-31	N/A	N/A
structural_annotation	UHGV-0244949_11	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_12	phrog_7370	50.5	0.000000000000035	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_12	UniRef90_A0A3D0LZU3	111.0	1.06e-29	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0244949_12	445972.ANACOL_01826	99.8	4.2e-26	HNH nucleases	N/A
UniRef90	UHGV-0244949_13	UniRef90_G9YN41	86.7	2.61e-21	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0244949_13	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0244949_13	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0244949_14	K03111	147.8	1.09301e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0244949_14	phrog_44	143.6	1.19951e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_14	UniRef90_A0A1Y4M5T6	202.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0244949_14	742738.HMPREF9460_00833	189.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0244949_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0244949_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0244949_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0244949_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0244949_14	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_15	phrog_2149	75.1	7.3e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_15	UniRef90_A0A417QFV0	109.0	3.51e-25	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0244949_15	1095750.HMPREF9970_1674	132.0	2.07e-34	N/A	N/A
structural_annotation	UHGV-0244949_15	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0244949_16	K01160	47.2	0.00000000000061	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0244949_16	phrog_1682	70.6	2.3e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244949_16	UniRef90_A0A1C5N534	161.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0244949_16	1235790.C805_00029	127.0	2.5e-36	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0244949_16	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0244949_16	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0244949_19	K00390	108.3	7.5e-32	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0244949_19	phrog_424	116.7	1.5e-34	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0244949_19	UniRef90_UPI001D087498	442.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0244949_19	1408437.JNJN01000032_gene2312	336.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0244949_19	BrxP_00001	69.8	4.2e-21	BrxP	BREX
Pfam	UHGV-0244949_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0244949_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0244949_19	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_21	phrog_111	146.3	1.49939e-43	DNA methyltransferase	other
UniRef90	UHGV-0244949_21	UniRef90_A0A316S635	222.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0244949_21	760568.Desku_0784	190.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0244949_21	oMTase_00015	181.3	0	orphan methyltransferase	RM
Pfam	UHGV-0244949_21	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0244949_21	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_24	phrog_1384	125.9	2.7e-37	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0244949_24	428125.CLOLEP_01816	272.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0244949_24	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_25	phrog_38832	64.2	7.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0244949_25	1232443.BAIA02000078_gene48	59.7	0.00000000166	N/A	N/A
PHROG	UHGV-0244949_26	phrog_599	42.9	0.0000000000091	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0244949_26	UniRef90_A0A3R6D179	103.0	5.23e-27	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0244949_26	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0244949_26	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0244949_26	TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0244949_27	UniRef90_A0A1I0VIB3	60.5	0.000000000745	MazG nucleotide pyrophosphohydrolase domain-containing protein	N/A
UniRef90	UHGV-0244949_28	UniRef90_A0A8D9PDT5	63.9	0.0000000000519	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-0244949_30	phrog_236	111.7	1.2e-32	nucleotide kinase	other
UniRef90	UHGV-0244949_30	UniRef90_A0A418MBD6	118.0	1.36e-32	N/A	N/A
eggNOG-mapper	UHGV-0244949_30	500635.MITSMUL_03175	102.0	2.92e-25	N/A	N/A
Pfam	UHGV-0244949_30	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0244949_32	K07738	49.4	0.00000000000008	nrdR; transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-0244949_32	1232430.CAVG010000064_gene653	50.8	0.000000562	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0244949_32	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0244949_32	PF04606,NF007241	N/A	N/A	N/A	N/A
KOfam	UHGV-0244949_34	K22300	56.3	8e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0244949_34	phrog_8	63.5	5.3e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0244949_34	UniRef90_UPI00095219E9	95.5	1.6e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0244949_34	608506.COB47_1787	68.9	0.000000000000452	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0244949_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0244949_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0244949_34	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_35	phrog_606	82.8	4.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0244949_35	UniRef90_UPI00195648BB	166.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0244949_35	397290.C810_05185	135.0	2.77e-38	DNA-packaging protein gp3	N/A
Pfam	UHGV-0244949_35	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0244949_35	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0244949_36	K06909	144.3	1.10002e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0244949_36	phrog_10250	179.4	0	N/A	unknown function
UniRef90	UHGV-0244949_36	UniRef90_A0A3D3Y0N9	499.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0244949_36	1226322.HMPREF1545_00043	436.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0244949_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0244949_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0244949_36	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0244949_36	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0244949_36	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_37	phrog_64	160.5	0	portal protein	head and packaging
UniRef90	UHGV-0244949_37	UniRef90_UPI0018A8A301	573.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0244949_37	1235800.C819_02239	89.4	2.27e-16	phage portal protein, SPP1	N/A
Pfam	UHGV-0244949_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0244949_37	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_38	phrog_115	111.5	2.1e-33	minor head protein	head and packaging
UniRef90	UHGV-0244949_38	UniRef90_A0A810PSD3	555.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0244949_38	1111121.HMPREF1247_0797	167.0	1.02015e-42	cell adhesion	N/A
Pfam	UHGV-0244949_38	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0244949_38	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0244949_38	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244949_38	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_39	phrog_5	81.1	1.8e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0244949_39	UniRef90_UPI0018AA0B5A	187.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0244949_39	1280685.AUKC01000004_gene1630	106.0	8.78e-28	N/A	N/A
Pfam	UHGV-0244949_39	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0244949_39	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0244949_40	UniRef90_A0A6B9SU02	102.0	1.22e-23	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-0244949_40	476272.RUMHYD_02853	58.2	0.0000000959	N/A	N/A
structural_annotation	UHGV-0244949_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0244949_41	phrog_544	180.7	0	major head protein	head and packaging
UniRef90	UHGV-0244949_41	UniRef90_A0A810PZM2	722.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0244949_41	1347392.CCEZ01000005_gene1236	275.0	0	N/A	N/A
Pfam	UHGV-0244949_41	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0244949_41	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A