UHGV-0248391 (vOTU-119986)

Viral Genome: UHGV-0248391

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0248391
vOTU ID	vOTU-119986
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR174593_141_175945_round1256~3586385
Associated BioSample	SAMD00166368
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.78 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9756
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.06
Jumbo phage	No

Genome content
Genome length (bp)	31,936
GC content	59.96%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	93%
Average CDS length (bps)	582.59
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.78)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0248391_1	K00558	52.7	0.0000000000000045	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0248391_1	phrog_26324	106.0	2.4e-31	DNA methyltransferase	other
UniRef90	UHGV-0248391_1	UniRef90_R9KXL4	126.0	3.02e-33	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0248391_1	1235794.C811_01553	126.0	5.06e-34	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0248391_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0248391_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0248391_3	PF09889,MF_00649	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_8	phrog_986	72.7	3.7e-21	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_8	UniRef90_A4E7A3	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0248391_8	211110.gbs1152	70.5	0.00000000000000745	N/A	N/A
Pfam	UHGV-0248391_8	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0248391_8	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
Pfam	UHGV-0248391_10	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0248391_10	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-0248391_11	UniRef90_A0A5K1JEL1	177.0	0	Anti_R_Lar: restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0248391_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0248391_14	phrog_355	48.1	0.00000000000017	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_14	UniRef90_UPI001E585BFA	180.0	0	N/A	N/A
eggNOG-mapper	UHGV-0248391_14	97138.C820_00250	113.0	1.68e-31	N/A	N/A
Pfam	UHGV-0248391_14	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0248391_14	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_16	phrog_21525	43.9	0.00000000000093	N/A	unknown function
structural_annotation	UHGV-0248391_19	NF033863	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_20	phrog_2316	48.1	0.00000000000022	N/A	unknown function
UniRef90	UHGV-0248391_20	UniRef90_A0A410QQZ5	76.6	2.73e-16	N/A	N/A
eggNOG-mapper	UHGV-0248391_20	1280676.AUJO01000024_gene3262	73.6	9.44e-16	N/A	N/A
Pfam	UHGV-0248391_20	PF16475	N/A	N/A	N/A	DUF5052
structural_annotation	UHGV-0248391_20	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_21	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_22	phrog_8489	217.4	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_22	UniRef90_UPI001105FF6B	222.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0248391_22	1139219.I569_00860	164.0	0	DnaD domain protein	N/A
COG	UHGV-0248391_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0248391_22	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0248391_23	K02315	135.4	5.4e-40	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0248391_23	phrog_50	108.8	6.4e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_23	UniRef90_UPI00110588D4	364.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0248391_23	608534.GCWU000341_02938	126.0	1.78e-32	IstB-like ATP binding protein	N/A
Pfam	UHGV-0248391_23	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0248391_23	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0248391_23	PF01695,PF06827,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_25	PF06530	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_26	PF18275	N/A	N/A	N/A	N/A
Pfam	UHGV-0248391_27	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
structural_annotation	UHGV-0248391_28	PF09202	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_33	phrog_3007	45.3	0.0000000000011	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_34	UniRef90_UPI001C98641B	80.9	1.65e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0248391_34	1121381.JNIV01000234_gene622	48.1	0.00000428	N/A	N/A
Pfam	UHGV-0248391_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0248391_34	COG3636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_34	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0248391_35	K14060	142.8	2.79979e-42	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0248391_35	phrog_125	172.6	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0248391_35	UniRef90_UPI001BB21D57	255.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0248391_35	1408423.JHYA01000001_gene988	192.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0248391_35	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0248391_35	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0248391_35	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_36	phrog_38	188.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0248391_36	UniRef90_UPI001106681D	952.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0248391_36	1121866.AUGK01000003_gene1428	395.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0248391_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0248391_36	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_36	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_37	phrog_64	167.8	0	portal protein	head and packaging
UniRef90	UHGV-0248391_37	UniRef90_UPI0011063BFA	704.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0248391_37	1121866.AUGK01000003_gene1429	368.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0248391_37	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0248391_37	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-0248391_38	UniRef90_UPI001C9809E0	94.4	9.1e-21	N/A	N/A
structural_annotation	UHGV-0248391_38	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_39	phrog_247	219.4	0	major head protein	head and packaging
UniRef90	UHGV-0248391_39	UniRef90_UPI0013EB6380	315.0	0	coat protein	N/A
eggNOG-mapper	UHGV-0248391_39	1121866.AUGK01000003_gene1431	320.0	0	N/A	N/A
structural_annotation	UHGV-0248391_39	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0248391_40	UniRef90_UPI001107333C	134.0	1.78e-38	DNA-packaging protein	N/A
structural_annotation	UHGV-0248391_40	TIGR01560	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_42	PF17395,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0248391_43	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-0248391_44	UniRef90_UPI001106E87B	213.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0248391_44	1232453.BAIF02000058_gene1634	63.2	0.000000000158	N/A	N/A
structural_annotation	UHGV-0248391_44	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0248391_45	UniRef90_UPI001106B496	144.0	1.04004e-41	N/A	N/A
Pfam	UHGV-0248391_45	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0248391_45	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_47	phrog_1535	159.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0248391_47	1121866.AUGK01000003_gene1437	223.0	0	phage tail tape measure protein	N/A
COG	UHGV-0248391_47	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0248391_48	phrog_1194	92.5	3.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0248391_48	1121866.AUGK01000003_gene1438	152.0	0	N/A	N/A
Pfam	UHGV-0248391_48	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0248391_48	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0248391_49	phrog_6616	470.5	0	tail protein	tail
UniRef90	UHGV-0248391_49	UniRef90_A0A2Y9BMC1	303.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0248391_49	1121866.AUGK01000003_gene1439	320.0	0	Phage minor structural protein	N/A
COG	UHGV-0248391_49	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0248391_49	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0248391_50	476272.RUMHYD_01994	85.9	2.53e-17	N/A	N/A
structural_annotation	UHGV-0248391_51	PF15513	N/A	N/A	N/A	N/A