UHGV-0254113 (vOTU-116861)

Viral Genome: UHGV-0254113

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0254113
vOTU ID	vOTU-116861
Representative Genome?	Yes
Source	mMGE
Original genome ID	ERR2641475_141_310084_round8-12~3032064
Associated BioSample	SAMEA4731508
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.48 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.79
Jumbo phage	No

Genome content
Genome length (bp)	27,973
GC content	52.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	95%
Average CDS length (bps)	603.21
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0254113_2	K22299	48.8	0.00000000000016	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0254113_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0254113_2	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0254113_2	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0254113_3	K06400	250.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0254113_3	phrog_95	263.4	0	integrase	integration and excision
UniRef90	UHGV-0254113_3	UniRef90_G9YSD9	415.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0254113_3	1408437.JNJN01000002_gene1420	404.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0254113_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0254113_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0254113_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0254113_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0254113_3	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0254113_4	UniRef90_A0A8F0WD75	80.9	5.19e-16	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0254113_4	1378168.N510_03079	74.3	0.0000000000000778	N/A	N/A
PHROG	UHGV-0254113_9	phrog_6160	65.6	7.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0254113_9	314345.SPV1_06379	97.1	1.22e-20	N/A	N/A
eggNOG-mapper	UHGV-0254113_10	1160721.RBI_I00206	52.0	0.000000027	N/A	N/A
structural_annotation	UHGV-0254113_10	PF10723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_11	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0254113_12	UniRef90_UPI00164EA432	219.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0254113_12	525254.HMPREF0072_1273	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0254113_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0254113_12	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_13	phrog_13256	62.6	3.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0254113_13	428125.CLOLEP_01907	73.6	1.83e-16	N/A	N/A
PHROG	UHGV-0254113_15	phrog_937	59.3	8.1e-17	hemolysin	other
eggNOG-mapper	UHGV-0254113_15	1519439.JPJG01000023_gene533	71.2	0.00000000000000718	N/A	N/A
KOfam	UHGV-0254113_16	K18454	47.3	0.00000000000028	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-0254113_16	phrog_30034	73.5	3.8e-21	N/A	unknown function
UniRef90	UHGV-0254113_16	UniRef90_A0A1C5VT90	143.0	1.84999e-41	Chitinase A1	N/A
eggNOG-mapper	UHGV-0254113_16	1235796.C815_00903	130.0	1.94e-36	N/A	N/A
Pfam	UHGV-0254113_16	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0254113_16	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_18	phrog_35892	87.4	1.5e-36	N/A	unknown function
UniRef90	UHGV-0254113_18	UniRef90_A0A843FMD8	189.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0254113_18	471875.RUMLAC_02240	159.0	2.04001e-41	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0254113_18	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0254113_18	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_18	PF13306,NF041351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0254113_19	742733.HMPREF9469_05008	51.6	0.00000808	N/A	N/A
PHROG	UHGV-0254113_20	phrog_13589	149.1	2.52234e-44	N/A	unknown function
eggNOG-mapper	UHGV-0254113_20	411460.RUMTOR_01324	195.0	0	N/A	N/A
PHROG	UHGV-0254113_21	phrog_31538	46.3	0.00000000000091	N/A	unknown function
eggNOG-mapper	UHGV-0254113_21	428125.CLOLEP_01433	55.1	0.00000000852	N/A	N/A
structural_annotation	UHGV-0254113_22	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_23	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_25	phrog_32308	69.3	9.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0254113_25	1235797.C816_04180	117.0	3.25e-27	N/A	N/A
structural_annotation	UHGV-0254113_25	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_26	phrog_1194	93.8	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0254113_26	1219626.HMPREF1639_07230	63.2	0.0000000000332	N/A	N/A
Pfam	UHGV-0254113_26	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0254113_26	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_27	phrog_1535	116.3	6.2e-35	tail length tape measure protein	tail
UniRef90	UHGV-0254113_27	UniRef90_A0A810PX76	124.0	8.69e-26	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0254113_27	693746.OBV_18190	180.0	1.82169e-44	domain protein	N/A
COG	UHGV-0254113_27	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_27	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_28	phrog_706	121.7	5.3e-36	N/A	unknown function
UniRef90	UHGV-0254113_28	UniRef90_UPI000682A80B	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0254113_28	693746.OBV_18170	201.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0254113_28	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0254113_28	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_29	phrog_11299	84.7	1.2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0254113_29	693746.OBV_18160	153.0	0	N/A	N/A
structural_annotation	UHGV-0254113_29	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_30	phrog_3099	86.1	4.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0254113_30	693746.OBV_18150	257.0	0	N/A	N/A
structural_annotation	UHGV-0254113_30	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_31	phrog_3266	57.4	2.3e-16	tail completion	connector
eggNOG-mapper	UHGV-0254113_31	693746.OBV_18140	216.0	0	N/A	N/A
structural_annotation	UHGV-0254113_31	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_32	phrog_556	69.9	3.3e-20	minor head protein	head and packaging
UniRef90	UHGV-0254113_32	UniRef90_A0A4R1QRE8	111.0	1.6e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0254113_32	645991.Sgly_0344	56.2	0.0000000656	N/A	N/A
Pfam	UHGV-0254113_32	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0254113_32	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_33	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_34	phrog_541	63.9	2.4e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0254113_34	693746.OBV_18110	106.0	2.77e-28	N/A	N/A
PHROG	UHGV-0254113_35	phrog_212	261.5	0	major head protein	head and packaging
UniRef90	UHGV-0254113_35	UniRef90_A0A354MR33	538.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0254113_35	1232449.BAHV02000010_gene2714	345.0	0	N/A	N/A
structural_annotation	UHGV-0254113_35	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_36	phrog_194	88.2	1.2e-25	head scaffolding protein	head and packaging
UniRef90	UHGV-0254113_36	UniRef90_UPI00164D9F94	236.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0254113_36	693746.OBV_18080	172.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0254113_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0254113_36	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_37	phrog_581	235.4	0	minor head protein	head and packaging
UniRef90	UHGV-0254113_37	UniRef90_UPI0006814CA4	499.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0254113_37	693746.OBV_18050	524.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0254113_37	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0254113_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0254113_37	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_38	phrog_533	215.3	0	portal protein	head and packaging
UniRef90	UHGV-0254113_38	UniRef90_UPI000680A1DB	534.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0254113_38	693746.OBV_18040	394.0	0	N/A	N/A
Pfam	UHGV-0254113_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0254113_38	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0254113_40	K06909	132.8	3.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0254113_40	phrog_10250	162.2	0	N/A	unknown function
UniRef90	UHGV-0254113_40	UniRef90_A0A1C6J947	629.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0254113_40	1226322.HMPREF1545_00043	609.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0254113_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0254113_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0254113_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0254113_40	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0254113_41	UniRef90_A0A2Z4Q9Z4	155.0	0	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-0254113_41	1226322.HMPREF1545_00042	149.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-0254113_41	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_42	phrog_36	79.8	4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0254113_42	UniRef90_A0A858BU04	87.4	2.38e-19	N/A	N/A
eggNOG-mapper	UHGV-0254113_42	1123075.AUDP01000020_gene1515	59.3	0.00000000328	sigma factor activity	N/A
Pfam	UHGV-0254113_42	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0254113_42	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0254113_42	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0254113_43	phrog_801	82.9	4.6e-24	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0254113_43	UniRef90_A0A2K9P078	109.0	5.06e-29	N/A	N/A
eggNOG-mapper	UHGV-0254113_43	1297570.MESS4_510075	51.6	0.00000305	N/A	N/A
Pfam	UHGV-0254113_43	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-0254113_43	PF18909	N/A	N/A	N/A	N/A