UHGV-0259277 (vOTU-005885)

Viral Genome: UHGV-0259277

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0259277
vOTU ID	vOTU-005885
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_230097_round13~6741486
Associated BioSample	SAMN06115445
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.88
Jumbo phage	No

Genome content
Genome length (bp)	39,795
GC content	53.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	89%
Average CDS length (bps)	514.13
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0259277_1	phrog_4433	123.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0259277_1	343509.SG1142	114.0	3.15e-29	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0259277_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0259277_2	phrog_373	192.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0259277_2	UniRef90_UPI001C039A6C	407.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0259277_2	585506.HMPREF0877_0897	163.0	0	ORF6C domain	N/A
Pfam	UHGV-0259277_2	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0259277_2	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0259277_2	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0259277_2	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0259277_2	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259277_9	PF04325	N/A	N/A	N/A	N/A
KOfam	UHGV-0259277_10	K22300	49.5	0.000000000000087	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0259277_10	phrog_2967	47.8	0.00000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0259277_10	UniRef90_A0A844DFR0	173.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0259277_10	748224.HMPREF9436_01444	139.0	7.64997e-41	N/A	N/A
Pfam	UHGV-0259277_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0259277_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0259277_10	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0259277_12	UniRef90_A0A1W2B3I7	75.1	0.000000000000844	Ig-like domain (Group 2)	N/A
structural_annotation	UHGV-0259277_12	PF16900,NF040991	N/A	N/A	N/A	N/A
KOfam	UHGV-0259277_15	K15773	43.4	0.0000000000067	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0259277_15	phrog_2328	40.8	0.000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0259277_15	UniRef90_A0A6N7TLT0	209.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0259277_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0259277_15	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0259277_15	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0259277_16	K14059	157.8	0	int; integrase	N/A
PHROG	UHGV-0259277_16	phrog_1	187.9	0	integrase	integration and excision
UniRef90	UHGV-0259277_16	UniRef90_A0A174D176	493.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0259277_16	411471.SUBVAR_05137	262.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0259277_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0259277_16	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0259277_16	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259277_18	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_19	phrog_16490	55.9	9.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0259277_19	397290.C810_05212	69.7	0.0000000000186	N/A	N/A
UniRef90	UHGV-0259277_24	UniRef90_A0A415ZLW7	65.1	0.0000000000267	DNA-binding response regulator	N/A
eggNOG-mapper	UHGV-0259277_24	411469.EUBHAL_02513	64.3	0.000000000082	N/A	N/A
Pfam	UHGV-0259277_24	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0259277_24	PF00196,NF040595,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_25	phrog_13890	59.3	5e-17	N/A	unknown function
UniRef90	UHGV-0259277_25	UniRef90_A0A1C7FKE8	59.3	0.000000000223	Arc domain-containing protein	N/A
eggNOG-mapper	UHGV-0259277_25	657322.FPR_28500	46.2	0.00000889	N/A	N/A
structural_annotation	UHGV-0259277_25	NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_26	phrog_99	42.0	0.000000000015	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259277_26	UniRef90_A0A3R5XWF2	87.0	1.03e-18	AP2 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0259277_26	742740.HMPREF9474_00071	75.5	0.0000000000000201	N/A	N/A
PHROG	UHGV-0259277_29	phrog_918	100.6	7.7e-30	N/A	unknown function
UniRef90	UHGV-0259277_29	UniRef90_UPI000EC62F11	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0259277_29	537007.BLAHAN_05515	139.0	3.15012e-42	N/A	N/A
Pfam	UHGV-0259277_29	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0259277_29	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_30	phrog_263	87.6	8.4e-26	holin	lysis
UniRef90	UHGV-0259277_30	UniRef90_A0A329UCA4	108.0	2.69e-29	Phage holin	N/A
eggNOG-mapper	UHGV-0259277_30	1121344.JHZO01000003_gene952	100.0	1e-26	SPP1 phage holin	N/A
Pfam	UHGV-0259277_30	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0259277_30	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0259277_30	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_31	phrog_1863	75.5	4.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0259277_31	748224.HMPREF9436_00408	106.0	1.91e-29	N/A	N/A
KOfam	UHGV-0259277_32	K07273	165.0	0	acm; lysozyme	N/A
PHROG	UHGV-0259277_32	phrog_291	135.2	6e-40	endolysin	lysis
UniRef90	UHGV-0259277_32	UniRef90_UPI001D0EE7D8	268.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0259277_32	748224.HMPREF9436_00154	250.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0259277_32	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0259277_32	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0259277_32	PF01183,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0259277_33	K03651	51.3	0.000000000000017	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0259277_33	phrog_7158	136.6	1.3e-40	N/A	unknown function
eggNOG-mapper	UHGV-0259277_33	862514.HMPREF0623_0302	106.0	5.89e-21	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0259277_33	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
PHROG	UHGV-0259277_34	phrog_18110	66.0	4e-19	N/A	unknown function
UniRef90	UHGV-0259277_34	UniRef90_A0A1Y3TWK1	189.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0259277_34	871584.D9ZNF0_9CAUD	60.8	0.00000037	peptidoglycan catabolic process	N/A
Pfam	UHGV-0259277_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
structural_annotation	UHGV-0259277_34	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_35	phrog_33	59.2	1.1e-16	distal tail protein Dit	tail
UniRef90	UHGV-0259277_35	UniRef90_A0A1C6G0J5	74.7	0.00000000000165	Phage tail protein	N/A
structural_annotation	UHGV-0259277_35	PF20753,PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_36	phrog_9959	89.8	1.7e-26	tail length tape measure protein	tail
UniRef90	UHGV-0259277_36	UniRef90_A0A844DDD5	303.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0259277_36	1492737.FEM08_12070	147.0	3.42e-34	tape measure	N/A
Pfam	UHGV-0259277_36	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0259277_36	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0259277_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0259277_36	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_37	phrog_706	112.1	4.3e-33	N/A	unknown function
UniRef90	UHGV-0259277_37	UniRef90_UPI0011AF1F88	117.0	1.75e-29	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0259277_37	663278.Ethha_0101	99.8	1.97e-23	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0259277_37	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0259277_37	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_38	phrog_4450	52.7	0.0000000000000078	N/A	unknown function
structural_annotation	UHGV-0259277_38	PF20378	N/A	N/A	N/A	N/A
UniRef90	UHGV-0259277_39	UniRef90_A0A174M1L1	97.8	7.99e-22	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0259277_39	748224.HMPREF9436_03330	143.0	3.08005e-41	N/A	N/A
structural_annotation	UHGV-0259277_39	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_40	phrog_3266	116.4	1.4e-34	tail completion	connector
UniRef90	UHGV-0259277_40	UniRef90_UPI001F2730AA	120.0	3.68e-32	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0259277_40	632245.CLP_1653	100.0	3.39e-25	N/A	N/A
structural_annotation	UHGV-0259277_40	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_41	phrog_556	83.3	2.3e-24	minor head protein	head and packaging
UniRef90	UHGV-0259277_41	UniRef90_UPI000B10EF5E	105.0	2.51e-26	minor capsid protein	N/A
eggNOG-mapper	UHGV-0259277_41	718252.FP2_06630	105.0	5.96e-27	Minor capsid protein	N/A
Pfam	UHGV-0259277_41	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0259277_41	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_42	phrog_3366	91.6	8.1e-27	N/A	unknown function
Pfam	UHGV-0259277_42	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0259277_42	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_43	phrog_541	85.2	6.7e-25	head-tail adaptor	connector
PHROG	UHGV-0259277_44	phrog_10	186.3	0	major head protein	head and packaging
UniRef90	UHGV-0259277_44	UniRef90_A0A2A7AII3	519.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0259277_44	1120998.AUFC01000030_gene2236	400.0	0	Phage capsid family	N/A
Pfam	UHGV-0259277_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0259277_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0259277_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0259277_44	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_45	phrog_194	56.2	3.9e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0259277_45	UniRef90_A0A1C6FYX1	139.0	1.78e-38	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0259277_45	663278.Ethha_0497	139.0	2.11e-39	N/A	N/A
Pfam	UHGV-0259277_45	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0259277_45	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_46	phrog_581	347.4	0	minor head protein	head and packaging
UniRef90	UHGV-0259277_46	UniRef90_D4K446	598.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0259277_46	718252.FP2_06690	598.0	0	N/A	N/A
Pfam	UHGV-0259277_46	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0259277_46	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259277_46	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_47	phrog_533	354.4	0	portal protein	head and packaging
UniRef90	UHGV-0259277_47	UniRef90_A0A291T9A9	721.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0259277_47	748224.HMPREF9436_03340	716.0	0	N/A	N/A
structural_annotation	UHGV-0259277_47	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0259277_48	K06909	129.6	3e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0259277_48	phrog_10250	137.1	6.70003e-41	N/A	unknown function
UniRef90	UHGV-0259277_48	UniRef90_A0A3A6EEP8	672.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0259277_48	1226322.HMPREF1545_00043	464.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0259277_48	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0259277_48	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0259277_48	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0259277_48	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_49	phrog_2412	50.5	0.000000000000034	N/A	unknown function
structural_annotation	UHGV-0259277_52	PF17941,MF_01917,NF010490,COG3886	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_54	phrog_36	40.6	0.000000000044	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0259277_54	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_56	phrog_359	45.7	0.00000000000089	DNA methyltransferase	other
UniRef90	UHGV-0259277_56	UniRef90_W1I420	54.7	0.00000000421	Uncultured bacterium extrachromosomal DNA RGI01389	N/A
eggNOG-mapper	UHGV-0259277_56	1121090.KB894686_gene2842	61.6	0.0000000000172	MT-A70	N/A
COG	UHGV-0259277_56	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
KOfam	UHGV-0259277_57	K01160	51.7	0.000000000000026	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0259277_57	phrog_34	52.8	0.0000000000000078	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259277_57	UniRef90_A0A844DBG8	229.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0259277_57	875454.BAEW01000002_gene491	130.0	1.07e-37	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0259277_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0259277_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0259277_57	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0259277_58	UniRef90_A0A845R8R0	109.0	2.91e-28	N/A	N/A
structural_annotation	UHGV-0259277_60	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_61	phrog_16304	53.7	0.0000000000000042	N/A	unknown function
Pfam	UHGV-0259277_61	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-0259277_62	phrog_4572	117.5	6.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0259277_62	97139.C824_00731	106.0	2.78e-27	N/A	N/A
KOfam	UHGV-0259277_63	K03111	139.1	4.80001e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0259277_63	phrog_44	144.3	5.99756e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259277_63	UniRef90_UPI001C00AA91	223.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0259277_63	718252.FP2_06770	206.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0259277_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0259277_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0259277_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0259277_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0259277_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0259277_64	phrog_561	102.5	4.3e-30	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259277_64	UniRef90_UPI0011C8A287	144.0	1.35e-39	recombinase RecT	N/A
eggNOG-mapper	UHGV-0259277_64	742733.HMPREF9469_01849	139.0	3.69e-38	N/A	N/A
structural_annotation	UHGV-0259277_64	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259277_66	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259277_68	PF10743,NF033787	N/A	N/A	N/A	N/A