UHGV-0259633 (vOTU-169409)

Viral Genome: UHGV-0259633

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0259633
vOTU ID	vOTU-169409
Representative Genome?	Yes
Source	mMGE
Original genome ID	k99_78713_round1256~5043905
Associated BioSample	SAMEA4813957
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.2
Jumbo phage	No

Genome content
Genome length (bp)	36,231
GC content	41.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	702.13
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 89.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0259633_4	UniRef90_A0A412ULX9	110.0	7.47e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0259633_4	679200.HMPREF9333_02253	57.4	0.000000000187	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0259633_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0259633_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0259633_4	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_5	K07273	198.3	0	acm; lysozyme	N/A
PHROG	UHGV-0259633_5	phrog_291	170.0	0	endolysin	lysis
UniRef90	UHGV-0259633_5	UniRef90_A0A373KPS8	498.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0259633_5	1120933.ATUY01000002_gene158	165.0	0	lysozyme activity	N/A
Pfam	UHGV-0259633_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0259633_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0259633_5	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0259633_5	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_6	phrog_443	66.2	8.1e-19	holin	lysis
UniRef90	UHGV-0259633_6	UniRef90_R6R2Q3	88.6	9.06e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0259633_6	1298920.KI911353_gene2669	81.6	8.66e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0259633_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0259633_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_7	phrog_1863	71.0	1.3e-21	N/A	unknown function
UniRef90	UHGV-0259633_7	UniRef90_UPI001F223E8B	91.3	1.9e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0259633_7	1203606.HMPREF1526_02027	82.4	9.85e-20	N/A	N/A
PHROG	UHGV-0259633_9	phrog_5302	281.1	0	tail protein	tail
UniRef90	UHGV-0259633_9	UniRef90_A0A373XLZ6	1082.0	0	N/A	N/A
eggNOG-mapper	UHGV-0259633_9	742740.HMPREF9474_02337	332.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0259633_9	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0259633_9	COG1262	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_10	phrog_1067	100.4	3.1e-30	minor head protein	head and packaging
UniRef90	UHGV-0259633_10	UniRef90_A0A1G5CPD2	152.0	1.03e-38	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0259633_10	1462527.CCDM010000003_gene3730	61.2	0.000000353	gp58-like protein	N/A
Pfam	UHGV-0259633_10	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0259633_10	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0259633_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259633_10	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_11	phrog_33	75.5	1.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-0259633_11	UniRef90_A0A1G5CPA2	134.0	1.69e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0259633_11	1160721.RBI_I01575	85.1	6.86e-17	Phage tail protein	N/A
COG	UHGV-0259633_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0259633_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_12	K20283	66.2	6.1e-20	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0259633_12	phrog_1272	273.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0259633_12	UniRef90_A0A412ULX0	1737.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0259633_12	588581.Cpap_1264	213.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0259633_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0259633_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0259633_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259633_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_15	phrog_88	76.2	4.2e-22	major tail protein	tail
UniRef90	UHGV-0259633_15	UniRef90_A0A1G5CNS8	151.0	5.5071e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0259633_15	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0259633_15	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0259633_15	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0259633_16	UniRef90_UPI000E5564A4	270.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0259633_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0259633_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0259633_17	272623.L59277	51.6	0.0000006	N/A	N/A
structural_annotation	UHGV-0259633_17	PF05657,TIGR04412	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_18	phrog_19734	71.7	9.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0259633_18	86416.Clopa_0343	60.5	0.000000000326	N/A	N/A
NCBIFam	UHGV-0259633_18	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0259633_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_19	phrog_749	56.2	5.7e-16	N/A	unknown function
UniRef90	UHGV-0259633_19	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0259633_19	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-0259633_20	phrog_10	128.6	6.4e-38	major head protein	head and packaging
UniRef90	UHGV-0259633_20	UniRef90_A0A412ULW9	736.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0259633_20	1211817.CCAT010000053_gene2132	323.0	0	Phage capsid family	N/A
Pfam	UHGV-0259633_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0259633_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0259633_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0259633_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_21	K01358	139.2	4.00001e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0259633_21	phrog_94	207.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0259633_21	UniRef90_A0A412ULU1	461.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0259633_21	1211817.CCAT010000053_gene2131	173.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0259633_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0259633_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0259633_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_22	phrog_12	99.2	3.1e-29	portal protein	head and packaging
UniRef90	UHGV-0259633_22	UniRef90_A0A412ULV9	747.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0259633_22	1415774.U728_1254	261.0	0	Phage portal protein	N/A
Pfam	UHGV-0259633_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0259633_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0259633_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0259633_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_23	phrog_9	293.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0259633_23	UniRef90_A0A412UM03	1019.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0259633_23	86416.Clopa_0337	634.0	0	Phage Terminase	N/A
Pfam	UHGV-0259633_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0259633_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0259633_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0259633_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_24	phrog_5110	82.0	5.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0259633_24	UniRef90_A0A1M5U1D5	113.0	1.2e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0259633_24	1211817.CCAT010000053_gene2128	99.8	6.32e-26	N/A	N/A
Pfam	UHGV-0259633_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0259633_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_25	phrog_119	69.2	6.1e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_25	UniRef90_A0A412ULY9	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0259633_25	1158607.UAU_01026	100.0	4.13e-26	HNH endonuclease	N/A
Pfam	UHGV-0259633_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0259633_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0259633_26	K22300	40.7	0.000000000045	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0259633_26	phrog_8	51.9	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0259633_26	UniRef90_A0A412ULX1	132.0	3.07e-39	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0259633_26	226185.EF_1277	54.7	0.0000000281	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0259633_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0259633_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0259633_26	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259633_27	PF02796,COG2771	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0259633_32	PF02559,MF_00667,TIGR02861	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_33	phrog_140	92.3	5.8e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_33	UniRef90_A0A2N0UXU6	264.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0259633_33	411462.DORLON_00806	205.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0259633_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0259633_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0259633_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_34	K07505	403.0	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0259633_34	phrog_2597	1167.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_34	UniRef90_A0A2N0UXP7	1452.0	0	Regulatory protein RepA	N/A
eggNOG-mapper	UHGV-0259633_34	394503.Ccel_3304	954.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0259633_34	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0259633_34	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0259633_34	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0259633_34	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_35	K17677	364.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0259633_35	phrog_16	299.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_35	UniRef90_A0A412ULZ3	1050.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0259633_35	1235798.C817_03499	838.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0259633_35	mREase_IV_00005	136.6	2e-40	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0259633_35	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0259633_35	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0259633_35	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0259633_35	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_36	phrog_2698	175.6	0	N/A	unknown function
UniRef90	UHGV-0259633_36	UniRef90_UPI000F54335B	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0259633_36	742723.HMPREF9477_00927	139.0	6.48e-40	N/A	N/A
structural_annotation	UHGV-0259633_36	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_37	phrog_124	264.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_37	UniRef90_A0A2N0UXR5	677.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0259633_37	411462.DORLON_00811	431.0	0	AAA domain	N/A
Pfam	UHGV-0259633_37	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0259633_37	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_39	K03546	55.5	4.9e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0259633_39	phrog_1499	479.0	0	N/A	unknown function
UniRef90	UHGV-0259633_39	UniRef90_A0A2N0UXU2	753.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0259633_39	645991.Sgly_0320	503.0	0	domain protein	N/A
Pfam	UHGV-0259633_39	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0259633_39	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0259633_39	TIGR03185,COG5293	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_40	phrog_323	84.8	1.2e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0259633_40	UniRef90_UPI001C01CFF8	293.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0259633_40	394503.Ccel_3305	338.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0259633_40	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0259633_40	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_42	phrog_6058	42.1	0.000000000011	N/A	unknown function
structural_annotation	UHGV-0259633_42	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0259633_44	K22300	51.8	0.000000000000019	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0259633_44	phrog_2328	42.4	0.0000000000085	transcriptional repressor	transcription regulation
UniRef90	UHGV-0259633_44	UniRef90_A0A373KVP1	107.0	1.17e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0259633_44	525254.HMPREF0072_0267	79.0	2.79e-17	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0259633_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0259633_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0259633_44	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0259633_46	phrog_4980	115.9	4.8e-36	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0259633_46	UniRef90_UPI000E52DA24	353.0	0	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0259633_46	658086.HMPREF0994_06731	96.3	2.31e-19	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0259633_46	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0259633_46	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0259633_46	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-0259633_47	K14059	102.5	6.4e-30	int; integrase	N/A
PHROG	UHGV-0259633_47	phrog_1	127.5	1.3e-37	integrase	integration and excision
UniRef90	UHGV-0259633_47	UniRef90_A0A374MXE7	792.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0259633_47	693746.OBV_41260	179.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0259633_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0259633_47	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0259633_47	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0259633_48	UniRef90_A0A078KVG0	64.7	0.00000000000125	Putative membrane protein	N/A