UHGV-0267603 (vOTU-049834)

Viral Genome: UHGV-0267603

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0267603
vOTU ID	vOTU-049834
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR10479809_141_51730_round347~5036829
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.974
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.51
Jumbo phage	No

Genome content
Genome length (bp)	39,426
GC content	53.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	91%
Average CDS length (bps)	816.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0267603_1	1226322.HMPREF1545_00787	115.0	5.88e-25	N/A	N/A
eggNOG-mapper	UHGV-0267603_2	1226322.HMPREF1545_00786	115.0	9.38e-25	N/A	N/A
PHROG	UHGV-0267603_4	phrog_511	241.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0267603_4	UniRef90_A0A8D9UH72	371.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0267603_4	1519439.JPJG01000060_gene1903	375.0	0	N/A	N/A
structural_annotation	UHGV-0267603_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_5	phrog_12105	109.8	1.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0267603_5	1519439.JPJG01000060_gene1891	89.0	3.19e-21	N/A	N/A
PHROG	UHGV-0267603_7	phrog_1129	64.7	1.1e-18	holin	lysis
UniRef90	UHGV-0267603_7	UniRef90_A0A416MDZ9	130.0	8.83e-38	Enolase	N/A
eggNOG-mapper	UHGV-0267603_7	742740.HMPREF9474_03522	119.0	2.52e-34	N/A	N/A
Pfam	UHGV-0267603_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0267603_7	PF06946	N/A	N/A	N/A	N/A
Pfam	UHGV-0267603_8	PF16935	N/A	N/A	Putative Holin-like Toxin (Hol-Tox)	Hol_Tox
KOfam	UHGV-0267603_9	K01448	159.4	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0267603_9	phrog_18955	181.9	0	N/A	unknown function
UniRef90	UHGV-0267603_9	UniRef90_A0A1Y3X8T4	373.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0267603_9	1226322.HMPREF1545_00782	263.0	0	N/A	N/A
Pfam	UHGV-0267603_9	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0267603_9	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0267603_9	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0267603_9	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0267603_12	UniRef90_A0A8J6J965	55.8	0.00000000198	XkdX family protein	N/A
Pfam	UHGV-0267603_12	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0267603_12	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0267603_13	1519439.JPJG01000060_gene1895	110.0	8.21e-28	N/A	N/A
structural_annotation	UHGV-0267603_13	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_15	phrog_3279	64.0	1.6e-18	tail fiber protein	tail
Pfam	UHGV-0267603_15	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0267603_16	PF18454	N/A	N/A	Major tropism determinant N-terminal domain	Mtd_N
PHROG	UHGV-0267603_17	phrog_15239	87.1	7.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0267603_17	1449126.JQKL01000003_gene1694	53.9	0.000000243	N/A	N/A
PHROG	UHGV-0267603_18	phrog_1357	298.0	0	major head protein	head and packaging
UniRef90	UHGV-0267603_18	UniRef90_UPI000B8B3F29	437.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0267603_18	1203606.HMPREF1526_02746	385.0	0	N/A	N/A
NCBIFam	UHGV-0267603_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0267603_18	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_19	phrog_13908	301.6	0	N/A	unknown function
UniRef90	UHGV-0267603_19	UniRef90_UPI0012DFC3C8	115.0	3e-25	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0267603_19	1410650.JHWL01000003_gene2831	112.0	6.83e-26	N/A	N/A
KOfam	UHGV-0267603_20	K07584	51.0	0.000000000000026	N/A	N/A
PHROG	UHGV-0267603_20	phrog_4478	47.8	0.00000000000019	peptidase	other
UniRef90	UHGV-0267603_20	UniRef90_A0A350TLP9	63.9	0.0000000000304	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0267603_20	394503.Ccel_1321	54.7	0.0000000315	Cysteine protease Prp	N/A
Pfam	UHGV-0267603_20	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0267603_20	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0267603_20	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_21	phrog_156	343.6	0	portal protein	head and packaging
UniRef90	UHGV-0267603_21	UniRef90_A0A8D9UH10	639.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0267603_21	748224.HMPREF9436_01396	551.0	0	N/A	N/A
structural_annotation	UHGV-0267603_21	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0267603_22	K06909	135.9	3.60001e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0267603_22	phrog_979	154.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0267603_22	UniRef90_R5AXD9	684.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0267603_22	1410650.JHWL01000003_gene2834	555.0	0	N/A	N/A
Pfam	UHGV-0267603_22	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0267603_22	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0267603_22	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
Pfam	UHGV-0267603_23	PF18932	N/A	N/A	N/A	DUF5681
PHROG	UHGV-0267603_24	phrog_8	48.3	0.00000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0267603_24	UniRef90_UPI000F068FBD	89.7	4.26e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0267603_24	1226322.HMPREF1545_00039	83.6	1.57e-19	sequence-specific DNA binding	N/A
Pfam	UHGV-0267603_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0267603_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0267603_25	phrog_599	40.8	0.000000000043	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0267603_25	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0267603_25	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
KOfam	UHGV-0267603_35	K02314	263.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0267603_35	phrog_19	236.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0267603_35	UniRef90_A0A1Y3RP11	409.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0267603_35	1226322.HMPREF1545_00095	305.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0267603_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0267603_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0267603_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0267603_35	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_36	phrog_270	134.8	8.60001e-40	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0267603_36	UniRef90_UPI001F3D92C2	147.0	1.1e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0267603_36	742738.HMPREF9460_00851	154.0	6.68419e-43	Helix-turn-helix domain	N/A
Pfam	UHGV-0267603_36	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0267603_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0267603_36	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0267603_38	742738.HMPREF9460_00848	74.3	6.99e-16	N/A	N/A
PHROG	UHGV-0267603_39	phrog_8	55.5	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0267603_39	UniRef90_A0A412EXN2	87.0	2.81e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0267603_39	394503.Ccel_3076	74.7	1.34e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0267603_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0267603_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0267603_39	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_40	phrog_8	61.2	2.8e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0267603_40	UniRef90_A0A844DZ87	105.0	5.26e-27	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0267603_40	665950.HMPREF1025_02562	105.0	1.34e-27	TRANSCRIPTIONal	N/A
Pfam	UHGV-0267603_40	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0267603_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0267603_40	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_41	phrog_87	86.1	3.1e-25	metallo-protease	other
UniRef90	UHGV-0267603_41	UniRef90_A0A358M3H4	187.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0267603_41	1007096.BAGW01000011_gene2354	171.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0267603_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0267603_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0267603_41	PF06114,COG2856	N/A	N/A	N/A	N/A
COG	UHGV-0267603_42	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
KOfam	UHGV-0267603_43	K14059	130.2	3.1e-38	int; integrase	N/A
PHROG	UHGV-0267603_43	phrog_1	172.7	0	integrase	integration and excision
UniRef90	UHGV-0267603_43	UniRef90_UPI001959BD31	487.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0267603_43	1378168.N510_03298	432.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0267603_43	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0267603_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0267603_43	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0267603_43	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0267603_44	phrog_22978	145.0	2.49431e-43	N/A	unknown function
UniRef90	UHGV-0267603_44	UniRef90_UPI001BB47D0E	3441.0	0	strawberry notch family protein	N/A
eggNOG-mapper	UHGV-0267603_44	1123288.SOV_4c02780	1207.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0267603_44	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
Pfam	UHGV-0267603_44	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-0267603_44	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
Pfam	UHGV-0267603_44	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0267603_44	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A