UHGV-0273161 (vOTU-023840)

Viral Genome: UHGV-0273161

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0273161
vOTU ID	vOTU-023840
Representative Genome?	Yes
Source	mMGE
Original genome ID	ERR525976_119_44749_round347~1845193
Associated BioSample	SAMN05826807
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.4 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9581
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.41
Jumbo phage	No

Genome content
Genome length (bp)	28,131
GC content	28.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	87%
Average CDS length (bps)	743.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.4)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0273161_1	K06400	286.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0273161_1	phrog_95	307.1	0	integrase	integration and excision
UniRef90	UHGV-0273161_1	UniRef90_A0A174H5K0	790.0	0	Resolvase family protein	N/A
eggNOG-mapper	UHGV-0273161_1	536232.CLM_2686	488.0	0	resolvase	N/A
Pfam	UHGV-0273161_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0273161_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0273161_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0273161_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0273161_1	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0273161_2	K18830	64.4	2.1e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0273161_2	phrog_8	47.6	0.00000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0273161_2	UniRef90_R6G471	225.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0273161_2	1128398.Curi_c22140	85.1	3.23e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0273161_2	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0273161_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0273161_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0273161_3	K18830	60.2	4.2e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0273161_3	phrog_8	43.4	0.0000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0273161_3	UniRef90_R6GPR6	156.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0273161_3	1414720.CBYM010000002_gene594	153.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0273161_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0273161_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0273161_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0273161_8	K22299	48.3	0.00000000000025	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0273161_8	phrog_3	49.1	0.00000000000025	transcriptional repressor	transcription regulation
UniRef90	UHGV-0273161_8	UniRef90_A0A174DH26	86.7	4.45e-21	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0273161_8	1123263.AUKY01000012_gene1993	48.9	0.00000297	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0273161_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0273161_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0273161_8	PF12844,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_9	phrog_3584	206.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0273161_9	1414720.CBYM010000002_gene589	142.0	1.81e-38	N/A	N/A
structural_annotation	UHGV-0273161_9	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_10	phrog_824	156.1	0	N/A	unknown function
UniRef90	UHGV-0273161_10	UniRef90_UPI00164CCD6E	189.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0273161_10	1414720.CBYM010000002_gene588	177.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0273161_10	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0273161_11	phrog_98	44.7	0.0000000000024	N/A	unknown function
UniRef90	UHGV-0273161_11	UniRef90_UPI0018A9284C	226.0	0	YopX family protein	N/A
eggNOG-mapper	UHGV-0273161_11	1414720.CBYM010000002_gene585	215.0	0	YopX protein	N/A
Pfam	UHGV-0273161_11	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0273161_11	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_13	phrog_25509	75.3	6.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0273161_13	1414720.CBYM010000002_gene580	78.6	2.22e-18	N/A	N/A
PHROG	UHGV-0273161_14	phrog_36	45.7	0.00000000000092	transcriptional regulator	transcription regulation
UniRef90	UHGV-0273161_14	UniRef90_A0A1G9I4W9	105.0	2.2e-25	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0273161_14	1415774.U728_493	191.0	0	DNA-templated transcription, initiation	N/A
COG	UHGV-0273161_14	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0273161_14	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_15	phrog_1315	55.7	5.9e-16	N/A	unknown function
PHROG	UHGV-0273161_16	phrog_119	55.8	6.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0273161_16	UniRef90_UPI00164ABAC9	206.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0273161_16	768710.DesyoDRAFT_1275	108.0	5.78e-29	HNH nucleases	N/A
Pfam	UHGV-0273161_16	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0273161_16	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0273161_17	phrog_5110	78.1	9.8e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0273161_17	UniRef90_UPI00164B2843	217.0	0	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0273161_17	1307436.PBF_22053	120.0	1.42e-31	N/A	N/A
COG	UHGV-0273161_17	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0273161_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_18	phrog_9	277.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0273161_18	UniRef90_UPI00164CCF79	1046.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0273161_18	1235798.C817_02581	547.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0273161_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0273161_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0273161_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0273161_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_19	phrog_12	94.1	1.2e-27	portal protein	head and packaging
UniRef90	UHGV-0273161_19	UniRef90_UPI00164CC1C1	524.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0273161_19	349161.Dred_2606	245.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0273161_19	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0273161_19	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0273161_19	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0273161_19	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0273161_20	K01358	122.1	6.5e-36	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0273161_20	phrog_94	208.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0273161_20	UniRef90_A0A316S6S6	347.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0273161_20	1235792.C808_00085	237.0	0	Clp protease	N/A
Pfam	UHGV-0273161_20	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0273161_20	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0273161_20	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_21	phrog_10	100.0	3e-29	major head protein	head and packaging
UniRef90	UHGV-0273161_21	UniRef90_UPI00164AB0C3	653.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0273161_21	1211817.CCAT010000053_gene2132	338.0	0	Phage capsid family	N/A
Pfam	UHGV-0273161_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0273161_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0273161_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0273161_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_22	phrog_749	59.6	5.1e-17	N/A	unknown function
UniRef90	UHGV-0273161_22	UniRef90_A0A1I3QJG6	109.0	4.18e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0273161_22	349161.Dred_2603	62.4	0.0000000000252	N/A	N/A
PHROG	UHGV-0273161_23	phrog_11176	199.2	0	head-tail adaptor	connector
UniRef90	UHGV-0273161_23	UniRef90_UPI00164ACD7E	295.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0273161_23	1347392.CCEZ01000045_gene13	69.7	0.00000000000109	N/A	N/A
Pfam	UHGV-0273161_23	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0273161_23	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0273161_23	PF05521,PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_24	phrog_5	60.0	6.5e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-0273161_24	UniRef90_UPI00164C9F08	137.0	2.28e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0273161_24	1476973.JMMB01000007_gene1766	68.9	0.000000000000296	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0273161_24	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0273161_24	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0273161_24	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_25	phrog_78	43.4	0.0000000000063	tail terminator	connector
structural_annotation	UHGV-0273161_25	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_26	phrog_88	124.9	5.4e-37	major tail protein	tail
UniRef90	UHGV-0273161_26	UniRef90_B1V2P3	230.0	0	Phage major tail protein, Phi13 family	N/A
eggNOG-mapper	UHGV-0273161_26	1151292.QEW_0347	117.0	4.66e-30	Phage tail tube protein	N/A
NCBIFam	UHGV-0273161_26	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0273161_26	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0273161_27	1476973.JMMB01000007_gene1770	65.5	0.0000000000784	N/A	N/A
KOfam	UHGV-0273161_28	K20478	68.5	1.3e-20	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0273161_28	phrog_1533	442.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0273161_28	UniRef90_UPI00164B849B	731.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0273161_28	1151292.QEW_0351	402.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0273161_28	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0273161_28	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0273161_28	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0273161_28	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_29	phrog_33	58.9	1.3e-16	distal tail protein Dit	tail
UniRef90	UHGV-0273161_29	UniRef90_UPI001625AB57	181.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0273161_29	1280689.AUJC01000011_gene1531	168.0	0	phage tail	N/A
Pfam	UHGV-0273161_29	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0273161_29	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0273161_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0273161_29	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_30	phrog_1067	267.5	0	minor head protein	head and packaging
UniRef90	UHGV-0273161_30	UniRef90_UPI001C8C6847	607.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0273161_30	1280689.AUJC01000011_gene1532	343.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0273161_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0273161_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0273161_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0273161_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0273161_31	phrog_16573	54.1	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-0273161_31	UniRef90_UPI0010556061	225.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0273161_31	1499683.CCFF01000005_gene81	144.0	2.23e-38	N/A	N/A
Pfam	UHGV-0273161_31	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0273161_31	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0273161_31	PF10651,COG5456	N/A	N/A	N/A	N/A
UniRef90	UHGV-0273161_32	UniRef90_UPI00140FBD8E	1373.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0273161_32	1441930.Z042_23200	103.0	8.15e-20	N/A	N/A
eggNOG-mapper	UHGV-0273161_33	1499684.CCNP01000023_gene3170	73.2	5.14e-16	Bacteriophage holin family	N/A
COG	UHGV-0273161_33	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A