UHGV-0279409 (vOTU-063272)

Viral Genome: UHGV-0279409

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0279409
vOTU ID	vOTU-063272
Representative Genome?	Yes
Source	mMGE
Original genome ID	k119_171868_round1256~1579499
Associated BioSample	SAMN07688541
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.58 (High-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9727
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.78
Jumbo phage	No

Genome content
Genome length (bp)	50,720
GC content	37.73%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	96%
Average CDS length (bps)	808.70
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.58)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0279409_2	phrog_87	84.6	8.2e-25	metallo-protease	other
UniRef90	UHGV-0279409_2	UniRef90_R6NN10	185.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0279409_2	536232.CLM_2576	114.0	1.34e-30	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0279409_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0279409_2	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0279409_2	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_3	K22300	62.5	9.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0279409_3	phrog_8	78.4	1.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0279409_3	UniRef90_R6MT43	146.0	1.30993e-41	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0279409_3	411460.RUMTOR_02056	106.0	1.83e-27	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0279409_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0279409_3	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0279409_3	PF12844,MF_00584,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_4	K22300	63.4	5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0279409_4	phrog_8	54.5	0.0000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0279409_4	UniRef90_A0A650EQP0	84.3	3.46e-20	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0279409_4	218284.CCDN010000001_gene1646	65.9	0.00000000000635	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0279409_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0279409_4	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0279409_4	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_8	phrog_3150	49.7	0.000000000000077	N/A	unknown function
eggNOG-mapper	UHGV-0279409_8	580331.Thit_1411	54.7	0.00000000129	N/A	N/A
structural_annotation	UHGV-0279409_12	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279409_13	PF17574	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_14	phrog_997	106.1	2.7e-31	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0279409_14	UniRef90_R6MCS9	212.0	0	N/A	N/A
eggNOG-mapper	UHGV-0279409_14	1519439.JPJG01000059_gene1910	113.0	6.31e-31	N/A	N/A
PHROG	UHGV-0279409_15	phrog_1029	213.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0279409_15	1078085.HMPREF1210_01165	166.0	0	N/A	N/A
structural_annotation	UHGV-0279409_15	PF10065,COG5532	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279409_16	PF09943	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_17	phrog_674	140.1	1.49995e-41	N/A	unknown function
UniRef90	UHGV-0279409_17	UniRef90_A0A7X5HYD7	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0279409_17	1408437.JNJN01000039_gene373	159.0	2.24208e-44	N/A	N/A
Pfam	UHGV-0279409_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0279409_17	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_18	K07455	198.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0279409_18	phrog_148	221.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0279409_18	UniRef90_UPI001D034282	356.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0279409_18	1095750.HMPREF9970_1675	308.0	0	RecT family	N/A
Pfam	UHGV-0279409_18	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0279409_18	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0279409_18	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0279409_18	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_19	K06167	46.5	0.00000000000031	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0279409_19	phrog_392	137.0	1.6e-40	metal-dependent hydrolase	other
UniRef90	UHGV-0279409_19	UniRef90_A0A7X8XIL0	270.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0279409_19	665956.HMPREF1032_03101	225.0	0	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-0279409_19	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-0279409_19	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-0279409_19	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_20	phrog_398	193.3	0	N/A	unknown function
UniRef90	UHGV-0279409_20	UniRef90_UPI00137A6F13	251.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0279409_20	1485543.JMME01000021_gene802	171.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0279409_20	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0279409_20	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_22	K03111	136.1	4.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0279409_22	phrog_44	143.9	9.5008e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0279409_22	UniRef90_R6M3F2	196.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0279409_22	1291050.JAGE01000001_gene1719	146.0	3.40516e-43	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0279409_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0279409_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0279409_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0279409_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0279409_22	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_23	K02086	67.7	1.2e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0279409_23	phrog_2562	233.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0279409_23	UniRef90_UPI00137AD09D	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0279409_23	445971.ANASTE_00700	180.0	0	N/A	N/A
Pfam	UHGV-0279409_23	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
Pfam	UHGV-0279409_23	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0279409_23	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0279409_23	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0279409_23	PF14297,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_24	phrog_1770	76.6	4e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0279409_24	536233.CLO_1822	162.0	0	N/A	N/A
structural_annotation	UHGV-0279409_24	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_28	K19779	42.1	0.000000000015	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0279409_28	phrog_2245	61.1	1.5e-17	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0279409_28	UniRef90_A0A1C5STJ7	197.0	0	MazG domain-containing protein	N/A
Pfam	UHGV-0279409_28	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0279409_28	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0279409_28	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0279409_28	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0279409_28	PF14354,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_29	phrog_419	96.9	2.8e-28	N/A	unknown function
UniRef90	UHGV-0279409_29	UniRef90_A0A060QMU0	93.6	2.12e-23	N/A	N/A
eggNOG-mapper	UHGV-0279409_29	1123312.KB904569_gene346	100.0	8.87e-27	N/A	N/A
structural_annotation	UHGV-0279409_29	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_30	phrog_6802	118.5	3.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0279409_30	1256908.HMPREF0373_03028	86.3	1.93e-20	N/A	N/A
eggNOG-mapper	UHGV-0279409_31	1235802.C823_04654	62.0	0.0000000000335	N/A	N/A
UniRef90	UHGV-0279409_35	UniRef90_A0A1Q9JGI6	105.0	1.97e-26	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0279409_35	1095750.HMPREF9970_2261	130.0	7.3e-37	N/A	N/A
structural_annotation	UHGV-0279409_35	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0279409_36	742738.HMPREF9460_04058	63.9	0.000000000722	N/A	N/A
Pfam	UHGV-0279409_36	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
structural_annotation	UHGV-0279409_38	PF06056,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_39	K06909	143.0	2.90069e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0279409_39	phrog_979	168.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0279409_39	UniRef90_A0A355JD48	627.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0279409_39	1232449.BAHV02000016_gene1824	429.0	0	N/A	N/A
Pfam	UHGV-0279409_39	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0279409_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0279409_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0279409_40	UniRef90_A0A7X6VKT0	77.0	0.00000000000000143	C2H2-type domain-containing protein	N/A
structural_annotation	UHGV-0279409_40	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_41	phrog_156	126.7	7e-39	portal protein	head and packaging
eggNOG-mapper	UHGV-0279409_41	588581.Cpap_1526	337.0	0	N/A	N/A
structural_annotation	UHGV-0279409_41	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_43	phrog_14242	104.7	6.4e-31	major head protein	head and packaging
UniRef90	UHGV-0279409_43	UniRef90_A0A355JD53	494.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0279409_43	588581.Cpap_1528	137.0	5.74e-34	N/A	N/A
NCBIFam	UHGV-0279409_43	NF033394.1	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0279409_43	PF17236,MF_04133,NF033394,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0279409_45	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0279409_46	phrog_511	73.1	4.1e-21	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0279409_46	1449126.JQKL01000002_gene1688	119.0	8.21e-26	N/A	N/A
structural_annotation	UHGV-0279409_49	PF09144,NF038393	N/A	N/A	N/A	N/A
UniRef90	UHGV-0279409_51	UniRef90_R6MQV2	136.0	4.56e-31	Tail Collar domain protein	N/A
structural_annotation	UHGV-0279409_51	PF01696,NF000420,COG3420	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_53	K24248	40.5	0.000000000023	EMID1; EMI domain-containing protein 1	N/A
PHROG	UHGV-0279409_53	phrog_5073	54.6	0.0000000000000018	tail fiber protein	tail
eggNOG-mapper	UHGV-0279409_53	1536769.P40081_01140	58.9	0.000000784	N/A	N/A
Pfam	UHGV-0279409_53	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0279409_54	phrog_37799	73.3	1.3e-21	N/A	unknown function
UniRef90	UHGV-0279409_54	UniRef90_R6NA79	280.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0279409_54	411470.RUMGNA_02086	134.0	2.76e-38	N/A	N/A
Pfam	UHGV-0279409_54	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0279409_54	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0279409_54	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0279409_54	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0279409_55	397290.C810_05225	71.2	0.00000000000000488	N/A	N/A
PHROG	UHGV-0279409_56	phrog_918	117.4	4.5e-35	N/A	unknown function
UniRef90	UHGV-0279409_56	UniRef90_UPI001CCDC3EB	127.0	9.17e-37	N/A	N/A
eggNOG-mapper	UHGV-0279409_56	1140001.I571_01827	120.0	8.78e-35	N/A	N/A
Pfam	UHGV-0279409_56	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0279409_56	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_57	K01448	104.7	1.1e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0279409_57	phrog_435	167.6	0	endolysin	lysis
UniRef90	UHGV-0279409_57	UniRef90_A0A1C5N460	345.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0279409_57	272563.CD630_09720	200.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0279409_57	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0279409_57	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0279409_57	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0279409_58	K21471	155.1	0	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0279409_58	phrog_329	123.8	1.6e-36	minor tail protein	tail
UniRef90	UHGV-0279409_58	UniRef90_A0A355JE00	259.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0279409_58	1487921.DP68_07190	134.0	5.17e-32	NLP P60 protein	N/A
Pfam	UHGV-0279409_58	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0279409_58	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0279409_58	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-0279409_60	phrog_10089	1087.3	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0279409_60	UniRef90_A0A3D0X8D0	2898.0	0	Helicase ATP-binding domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0279409_60	397288.C806_03713	778.0	0	helicase C-terminal domain protein	N/A
Pfam	UHGV-0279409_60	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0279409_60	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0279409_60	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0279409_60	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A