UHGV-0288296 (vOTU-031791)

Viral Genome: UHGV-0288296

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0288296
vOTU ID	vOTU-031791
Representative Genome?	Yes
Source	mMGE
Original genome ID	ERR2855791_141_81629_round1256~4590194
Associated BioSample	SAMN06016331
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.3
Jumbo phage	No

Genome content
Genome length (bp)	37,151
GC content	37.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	87%
Average CDS length (bps)	610.70
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0288296_1	UniRef90_A0A7X2JI01	170.0	0	N/A	N/A
eggNOG-mapper	UHGV-0288296_1	500632.CLONEX_03976	254.0	0	N/A	N/A
Pfam	UHGV-0288296_1	PF14199	N/A	N/A	N/A	DUF4317
PHROG	UHGV-0288296_2	phrog_17690	101.5	1.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0288296_2	33035.JPJF01000107_gene432	74.7	0.000000000000007	N/A	N/A
PHROG	UHGV-0288296_4	phrog_16351	51.5	0.000000000000015	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288296_4	UniRef90_A0A894KBW2	76.6	9.04e-16	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0288296_4	658655.HMPREF0988_00866	145.0	6.86636e-44	N/A	N/A
PHROG	UHGV-0288296_7	phrog_15198	90.1	5.30001e-40	N/A	unknown function
UniRef90	UHGV-0288296_7	UniRef90_R6RGZ8	136.0	1.31e-37	N/A	N/A
eggNOG-mapper	UHGV-0288296_7	665950.HMPREF1025_02540	139.0	1.8e-39	N/A	N/A
Pfam	UHGV-0288296_7	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0288296_8	UniRef90_A0A143XK80	135.0	2.47e-37	DZANK-type domain-containing protein	N/A
Pfam	UHGV-0288296_8	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0288296_9	K04763	159.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0288296_9	phrog_1	127.0	2.2e-37	integrase	integration and excision
UniRef90	UHGV-0288296_9	UniRef90_A0A143XML8	421.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0288296_9	1122981.AUME01000001_gene1816	209.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0288296_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0288296_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0288296_9	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0288296_11	K00558	188.3	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0288296_11	phrog_116	225.2	0	DNA methyltransferase	other
UniRef90	UHGV-0288296_11	UniRef90_A0A8B3BSU1	748.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0288296_11	742740.HMPREF9474_04317	673.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0288296_11	MTase_II_00020	97.7	3.2e-32	Type II methyltransferase	RM
Pfam	UHGV-0288296_11	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0288296_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0288296_11	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_13	phrog_8898	40.2	0.000000000046	N/A	unknown function
UniRef90	UHGV-0288296_13	UniRef90_R6S8R0	72.0	0.00000000000000157	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0288296_13	411469.EUBHAL_00654	72.0	3.57e-16	Helix-turn-helix	N/A
COG	UHGV-0288296_13	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0288296_13	PF15731,NF007481,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_14	phrog_374	74.5	1.4e-38	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0288296_14	UniRef90_A0A1C5XK70	379.0	0	Helicase associated domain	N/A
eggNOG-mapper	UHGV-0288296_14	1437363.A0A090C6M5_9CAUD	158.0	3.15292e-43	HNH endonuclease	N/A
Pfam	UHGV-0288296_14	PF00847	N/A	N/A	AP2 domain	AP2
Pfam	UHGV-0288296_14	PF03457	N/A	N/A	Helicase associated domain	HA
structural_annotation	UHGV-0288296_15	PF12993	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288296_16	658659.HMPREF0983_00103	86.7	4.34e-19	N/A	N/A
structural_annotation	UHGV-0288296_16	PF18847,NF002761,COG1847	N/A	N/A	N/A	N/A
KOfam	UHGV-0288296_17	K07727	59.0	1.4e-16	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0288296_17	UniRef90_A0A292SSK6	127.0	5.56e-37	Cro/Cl family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0288296_17	411470.RUMGNA_00075	127.0	1.33e-37	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0288296_17	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0288296_17	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288296_18	1235802.C823_02864	73.9	8.62e-17	N/A	N/A
eggNOG-mapper	UHGV-0288296_19	658655.HMPREF0988_00895	106.0	1.48e-26	N/A	N/A
structural_annotation	UHGV-0288296_19	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288296_21	645991.Sgly_0337	92.8	1.84e-23	N/A	N/A
eggNOG-mapper	UHGV-0288296_24	717606.PaecuDRAFT_3115	134.0	6.91e-39	N/A	N/A
UniRef90	UHGV-0288296_25	UniRef90_A0A3E3JYB1	87.8	6.99e-22	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0288296_25	742738.HMPREF9460_00868	46.6	0.00000323	Cysteine-rich KTR	N/A
Pfam	UHGV-0288296_25	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0288296_25	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_27	phrog_38	180.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0288296_27	UniRef90_A0A8D9PG33	519.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0288296_27	1232453.BAIF02000058_gene1623	551.0	0	TIGRFAM Phage	N/A
COG	UHGV-0288296_27	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288296_27	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_28	phrog_36	68.4	1.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0288296_28	UniRef90_A0A412EN86	84.3	4.2e-18	N/A	N/A
eggNOG-mapper	UHGV-0288296_28	1286171.EAL2_c19860	81.3	1.06e-17	sigma factor activity	N/A
COG	UHGV-0288296_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0288296_28	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_29	phrog_64	163.3	0	portal protein	head and packaging
UniRef90	UHGV-0288296_29	UniRef90_UPI00189968BF	825.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0288296_29	1232453.BAIF02000058_gene1625	674.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0288296_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0288296_29	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_30	phrog_115	41.2	0.000000000027	minor head protein	head and packaging
eggNOG-mapper	UHGV-0288296_30	1121406.JAEX01000031_gene2561	58.9	0.00000018	Phage Mu protein F like protein	N/A
Pfam	UHGV-0288296_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0288296_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288296_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_32	phrog_172	43.8	0.0000000000049	head scaffolding protein	head and packaging
UniRef90	UHGV-0288296_32	UniRef90_UPI000E41BB01	213.0	0	N/A	N/A
eggNOG-mapper	UHGV-0288296_32	1232453.BAIF02000058_gene1626	200.0	0	N/A	N/A
Pfam	UHGV-0288296_32	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0288296_32	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_33	phrog_909	54.6	0.000000000000002	major head protein	head and packaging
eggNOG-mapper	UHGV-0288296_33	1298920.KI911353_gene2661	113.0	5.47e-31	N/A	N/A
PHROG	UHGV-0288296_34	phrog_29	164.6	0	major head protein	head and packaging
UniRef90	UHGV-0288296_34	UniRef90_UPI001D02C54B	531.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0288296_34	1298920.KI911353_gene2660	335.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0288296_34	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0288296_34	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0288296_36	397290.C810_01402	89.4	1.11e-21	N/A	N/A
eggNOG-mapper	UHGV-0288296_37	1232453.BAIF02000058_gene1630	150.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0288296_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0288296_38	UniRef90_UPI001BBD4500	216.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0288296_38	397290.C810_01411	129.0	1.67e-35	N/A	N/A
AcrCatalog	UHGV-0288296_38	cluster_24841	101.0	2.61e-29	NA	N/A
structural_annotation	UHGV-0288296_38	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288296_39	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_40	phrog_158	43.4	0.000000000006	major tail protein	tail
UniRef90	UHGV-0288296_40	UniRef90_UPI000E415907	207.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0288296_40	1232453.BAIF02000058_gene1634	194.0	0	N/A	N/A
structural_annotation	UHGV-0288296_40	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0288296_41	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_43	phrog_1535	181.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0288296_43	1232453.BAIF02000058_gene1637	366.0	0	phage tail tape measure protein	N/A
COG	UHGV-0288296_43	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0288296_44	phrog_1194	86.0	3.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0288296_44	742740.HMPREF9474_03515	142.0	5.37958e-42	N/A	N/A
Pfam	UHGV-0288296_44	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0288296_44	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_45	phrog_13879	305.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0288296_45	1235800.C819_00474	500.0	0	N/A	N/A
structural_annotation	UHGV-0288296_45	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_46	phrog_18725	70.7	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0288296_46	585501.HMPREF6123_0822	120.0	2.14e-33	N/A	N/A
PHROG	UHGV-0288296_48	phrog_16164	263.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0288296_48	457412.RSAG_01113	81.6	0.00000000000000101	N/A	N/A
structural_annotation	UHGV-0288296_48	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_49	phrog_16164	55.8	4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0288296_49	877415.JNJQ01000011_gene667	144.0	9.62e-36	GDSL-like Lipase/Acylhydrolase family	N/A
Pfam	UHGV-0288296_49	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0288296_50	phrog_4105	92.0	5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0288296_50	411459.RUMOBE_00911	154.0	0	N/A	N/A
PHROG	UHGV-0288296_51	phrog_443	60.6	4.4e-17	holin	lysis
UniRef90	UHGV-0288296_51	UniRef90_UPI000C75746C	98.6	1.53e-25	holin	N/A
eggNOG-mapper	UHGV-0288296_51	1235802.C823_05612	89.0	1.8e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0288296_51	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0288296_51	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0288296_52	phrog_1048	162.0	0	N/A	unknown function
UniRef90	UHGV-0288296_52	UniRef90_A0A417CPJ8	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0288296_52	457412.RSAG_01107	256.0	0	N/A	N/A
Pfam	UHGV-0288296_52	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0288296_52	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0288296_52	PF11195	N/A	N/A	N/A	N/A
KOfam	UHGV-0288296_53	K01448	78.8	7.9e-23	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0288296_53	phrog_435	144.6	9.09443e-43	endolysin	lysis
UniRef90	UHGV-0288296_53	UniRef90_A0A6N2UUF0	258.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0288296_53	552396.HMPREF0863_00263	186.0	0	hmm pf01520	N/A
Pfam	UHGV-0288296_53	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0288296_53	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0288296_53	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A