UHGV-0300136 (vOTU-050268)

Viral Genome: UHGV-0300136

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0300136
vOTU ID	vOTU-050268
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR8387648_119_43121_round1256~1843844
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9674
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.22
Jumbo phage	No

Genome content
Genome length (bp)	39,076
GC content	58.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	94%
Average CDS length (bps)	576.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0300136_1	K10421	49.6	0.000000000000018	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0300136_1	phrog_1533	593.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0300136_1	UniRef90_A0A1F8UPJ4	328.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0300136_1	35241.Q9AYV8_BPTU2	355.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0300136_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0300136_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-0300136_4	phrog_88	80.7	1.6e-23	major tail protein	tail
UniRef90	UHGV-0300136_4	UniRef90_A0A7U9IBX1	183.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0300136_4	33035.JPJF01000039_gene278	120.0	2e-30	N/A	N/A
Pfam	UHGV-0300136_4	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0300136_4	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0300136_5	UniRef90_A0A1C6FG30	114.0	3.28e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0300136_5	33035.JPJF01000039_gene277	111.0	6.23e-29	N/A	N/A
structural_annotation	UHGV-0300136_5	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0300136_6	999413.HMPREF1094_02005	84.0	1.19e-19	N/A	N/A
structural_annotation	UHGV-0300136_6	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_7	phrog_19734	122.6	2.1e-36	N/A	unknown function
UniRef90	UHGV-0300136_7	UniRef90_A0A6I7GNS7	141.0	7.53997e-41	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0300136_7	349161.Dred_2602	90.9	6.86e-22	N/A	N/A
structural_annotation	UHGV-0300136_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_8	phrog_749	67.9	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0300136_8	1211817.CCAT010000053_gene2133	80.1	3.12e-18	N/A	N/A
PHROG	UHGV-0300136_9	phrog_10	139.2	4.49999e-41	major head protein	head and packaging
UniRef90	UHGV-0300136_9	UniRef90_UPI0018757887	627.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0300136_9	1235792.C808_00086	447.0	0	Phage capsid family	N/A
Pfam	UHGV-0300136_9	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0300136_9	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0300136_9	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0300136_9	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0300136_9	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_10	K01358	116.3	3.7e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0300136_10	phrog_94	167.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0300136_10	UniRef90_UPI00111E41DA	163.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0300136_10	1232452.BAIB02000007_gene1626	164.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0300136_10	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0300136_10	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0300136_10	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_11	phrog_12	114.3	7.8e-34	portal protein	head and packaging
UniRef90	UHGV-0300136_11	UniRef90_G9YSB8	433.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0300136_11	610130.Closa_0742	315.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0300136_11	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0300136_11	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0300136_11	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0300136_11	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_12	phrog_9	242.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0300136_12	UniRef90_A0A1C6FFC9	878.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0300136_12	1235792.C808_00083	648.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0300136_12	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0300136_12	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0300136_12	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_13	phrog_5110	63.8	2.4e-18	terminase small subunit	head and packaging
UniRef90	UHGV-0300136_13	UniRef90_UPI001874172A	120.0	4.53e-33	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0300136_13	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0300136_13	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_14	phrog_119	67.1	2.6e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0300136_14	UniRef90_A0A2A7B6I3	130.0	8.46e-37	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0300136_14	349161.Dred_2609	89.0	1.77e-21	HNH nucleases	N/A
COG	UHGV-0300136_14	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0300136_16	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_19	phrog_478	134.6	3.3e-40	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-0300136_19	588581.Cpap_1500	174.0	0	N/A	N/A
PHROG	UHGV-0300136_20	phrog_924	51.2	0.000000000000016	N/A	unknown function
Pfam	UHGV-0300136_20	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0300136_26	UniRef90_UPI001C3A10B1	82.8	6.98e-18	Zinc ribbon domain-containing protein	N/A
PHROG	UHGV-0300136_28	phrog_599	45.3	0.0000000000017	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0300136_28	UniRef90_UPI0018AC14ED	102.0	2.07e-26	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0300136_28	742738.HMPREF9460_04054	73.9	6.73e-16	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0300136_28	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0300136_28	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_30	phrog_801	70.2	4e-20	endolysin; inhibits RNA polymerase	lysis
UniRef90	UHGV-0300136_30	UniRef90_UPI000B35015B	137.0	1.16e-39	N/A	N/A
eggNOG-mapper	UHGV-0300136_30	1244856.K4PY83_9CAUD	65.1	0.0000000000313	Cytidine and deoxycytidylate deaminase zinc-binding region	N/A
Pfam	UHGV-0300136_30	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UniRef90	UHGV-0300136_31	UniRef90_A0A6N9Q030	70.5	0.0000000000000402	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0300136_31	907348.TresaDRAFT_2380	47.8	0.00000988	N/A	N/A
PHROG	UHGV-0300136_33	phrog_8841	485.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0300136_33	UniRef90_UPI00082F09E8	1017.0	0	N/A	N/A
eggNOG-mapper	UHGV-0300136_33	742738.HMPREF9460_02495	669.0	0	N/A	N/A
Pfam	UHGV-0300136_33	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0300136_33	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0300136_33	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0300136_33	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_34	K02316	47.7	0.00000000000021	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0300136_34	phrog_11992	86.6	3.7e-25	N/A	unknown function
UniRef90	UHGV-0300136_34	UniRef90_UPI0009EF4F6D	223.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0300136_34	742738.HMPREF9460_02494	98.2	1.48e-23	CHC2 zinc finger	N/A
PADLOC	UHGV-0300136_34	drt-cluster192	65.6	1e-18	DRT	DRT
Pfam	UHGV-0300136_34	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0300136_34	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0300136_34	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_35	phrog_3490	159.3	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0300136_35	UniRef90_UPI00082A0802	268.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0300136_35	476272.RUMHYD_02832	119.0	1.05e-31	ERCC4 domain	N/A
Pfam	UHGV-0300136_35	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0300136_35	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0300136_35	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
UniRef90	UHGV-0300136_36	UniRef90_UPI00082E7ADF	208.0	0	N/A	N/A
Pfam	UHGV-0300136_36	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0300136_36	PF05037	N/A	N/A	N/A	N/A
UniRef90	UHGV-0300136_37	UniRef90_A0A2Z4QA33	154.0	6.30584e-44	PD-(D/E)XK nuclease	N/A
eggNOG-mapper	UHGV-0300136_37	445972.ANACOL_00147	157.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0300136_37	PF10926,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_38	phrog_124	130.5	1.2e-38	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0300136_38	UniRef90_UPI0009EE88A2	489.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0300136_38	718252.FP2_01060	243.0	0	AAA domain	N/A
Pfam	UHGV-0300136_38	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0300136_38	COG1100	N/A	N/A	GTPase SAR1 family domain	N/A
structural_annotation	UHGV-0300136_38	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_41	K21919	62.4	5.7e-18	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0300136_41	phrog_923	53.0	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0300136_41	768710.DesyoDRAFT_5248	55.8	0.000000911	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0300136_41	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-0300136_41	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0300136_41	PF13599,NF011744,COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0300136_43	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
UniRef90	UHGV-0300136_49	UniRef90_R9L6Z4	78.2	1.68e-17	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0300136_49	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0300136_49	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_50	K01356	90.5	2.5e-26	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0300136_50	phrog_4	115.7	4.7e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0300136_50	UniRef90_UPI00082C2E09	260.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0300136_50	1507.HMPREF0262_00168	151.0	2.95954e-42	Peptidase S24-like	N/A
Pfam	UHGV-0300136_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0300136_50	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0300136_50	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0300136_50	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_51	phrog_5319	58.1	3.5e-17	outer membrane protein	other
UniRef90	UHGV-0300136_51	UniRef90_UPI000ACD50CA	83.6	1.63e-16	toxin regulator	N/A
eggNOG-mapper	UHGV-0300136_51	471855.Shel_11450	104.0	4.13e-24	sh3 domain protein	N/A
COG	UHGV-0300136_51	COG3103	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_52	K14059	185.7	0	int; integrase	N/A
PHROG	UHGV-0300136_52	phrog_1	173.2	0	integrase	integration and excision
UniRef90	UHGV-0300136_52	UniRef90_A0A328U998	355.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0300136_52	1235793.C809_01886	277.0	0	Phage integrase family	N/A
Pfam	UHGV-0300136_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0300136_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0300136_52	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0300136_53	K01447	44.0	0.0000000000037	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0300136_53	phrog_20388	211.3	0	endolysin	lysis
UniRef90	UHGV-0300136_53	UniRef90_A0A1Y4WJ44	264.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0300136_53	1410624.JNKK01000045_gene544	243.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0300136_53	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0300136_53	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0300136_53	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0300136_54	phrog_1129	65.9	4.5e-19	holin	lysis
UniRef90	UHGV-0300136_54	UniRef90_UPI0002E32382	118.0	9.52e-33	phage holin family protein	N/A
eggNOG-mapper	UHGV-0300136_54	1007096.BAGW01000036_gene2663	118.0	1.6e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0300136_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0300136_54	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_55	phrog_1009	42.8	0.0000000000071	N/A	unknown function
PHROG	UHGV-0300136_59	phrog_13589	64.9	4.2039e-45	N/A	unknown function
eggNOG-mapper	UHGV-0300136_59	411471.SUBVAR_06929	305.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0300136_59	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
KOfam	UHGV-0300136_61	K16628	40.8	0.0000000000073	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0300136_61	phrog_5717	78.3	6.2e-23	tail protein	tail
eggNOG-mapper	UHGV-0300136_61	401053.AciPR4_0642	100.0	5.08e-19	calcium- and calmodulin-responsive adenylate cyclase activity	N/A
COG	UHGV-0300136_61	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
eggNOG-mapper	UHGV-0300136_62	1160721.RBI_I01574	60.1	0.000000671	Prophage endopeptidase tail	N/A
Pfam	UHGV-0300136_62	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0300136_62	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0300136_62	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_63	phrog_33	64.2	3.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-0300136_63	UniRef90_R6CIF3	123.0	1.45e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-0300136_63	575605.ACQN01000003_gene628	78.2	0.0000000000000241	N/A	N/A
COG	UHGV-0300136_63	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0300136_63	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0300136_64	phrog_19074	73.7	8.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0300136_64	1218173.BALCAV_0213720	59.7	0.00000135	Phage tail tape measure protein TP901	N/A
COG	UHGV-0300136_64	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A