UHGV-0318577 (vOTU-159851)

Viral Genome: UHGV-0318577

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0318577
vOTU ID	vOTU-159851
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR127704_141_21509_round13~8605173
Associated BioSample	SAMD00114950
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9747
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.04
Jumbo phage	No

Genome content
Genome length (bp)	35,352
GC content	47.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	93%
Average CDS length (bps)	819.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0318577_1	UniRef90_A0A1Q6R577	124.0	1.87e-32	N/A	N/A
structural_annotation	UHGV-0318577_1	PF18892	N/A	N/A	N/A	N/A
KOfam	UHGV-0318577_2	K07584	50.0	0.000000000000053	N/A	N/A
UniRef90	UHGV-0318577_2	UniRef90_A0A316S0R5	72.0	0.0000000000000365	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0318577_2	1262915.BN574_00870	72.8	0.00000000000000306	Cysteine protease Prp	N/A
Pfam	UHGV-0318577_2	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0318577_2	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_3	phrog_236	102.5	6.4e-30	nucleotide kinase	other
UniRef90	UHGV-0318577_3	UniRef90_UPI000F7F9E94	113.0	7.25e-30	N/A	N/A
eggNOG-mapper	UHGV-0318577_3	1033743.CAES01000020_gene3148	115.0	1.68e-31	N/A	N/A
Pfam	UHGV-0318577_3	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0318577_4	K03111	113.5	3.4e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0318577_4	phrog_44	112.3	5e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318577_4	UniRef90_A0A402BTH0	114.0	2.14e-30	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0318577_4	585503.HMPREF7545_1163	110.0	3.73e-29	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0318577_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0318577_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0318577_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0318577_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0318577_4	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_5	phrog_140	42.6	0.000000000011	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318577_5	UniRef90_A0A316S9J1	55.8	0.00000058	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0318577_5	743719.PaelaDRAFT_5642	52.8	0.00000121	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0318577_5	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0318577_5	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
eggNOG-mapper	UHGV-0318577_6	401526.TcarDRAFT_1279	86.7	3.42e-19	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-0318577_6	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
UniRef90	UHGV-0318577_9	UniRef90_D9PHN6	63.9	0.0000000000298	Plasmid related protein	N/A
eggNOG-mapper	UHGV-0318577_9	1198114.AciX9_1951	62.0	0.0000000000245	N/A	N/A
eggNOG-mapper	UHGV-0318577_13	1203606.HMPREF1526_00222	95.9	2.21e-22	N/A	N/A
UniRef90	UHGV-0318577_15	UniRef90_A0A523RS96	73.9	0.0000000000144	Glutamine amidotransferase type-2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0318577_15	1401067.HMPREF0872_03875	139.0	2.31e-36	N/A	N/A
PHROG	UHGV-0318577_16	phrog_16683	141.9	2.49992e-42	N/A	unknown function
UniRef90	UHGV-0318577_16	UniRef90_UPI000C7E58C8	144.0	4.44e-35	amidoligase family protein	N/A
eggNOG-mapper	UHGV-0318577_16	1384066.JAGT01000001_gene2548	148.0	1.6e-37	N/A	N/A
Pfam	UHGV-0318577_16	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0318577_16	PF12224,PF15591,MF_01609,NF010044,COG2170,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_19	phrog_606	61.6	1.2e-17	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0318577_19	485915.Dret_1613	66.2	0.0000000000336	DNA-packaging protein gp3	N/A
Pfam	UHGV-0318577_19	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
KOfam	UHGV-0318577_20	K06909	86.6	3.1e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0318577_20	phrog_2	163.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0318577_20	UniRef90_UPI001D00EC11	562.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0318577_20	1401067.HMPREF0872_06820	526.0	0	Terminase-like family	N/A
Pfam	UHGV-0318577_20	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0318577_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0318577_20	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0318577_21	PF21621,MF_01255,NF009806,COG4766	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_22	phrog_1216	310.6	0	portal protein	head and packaging
UniRef90	UHGV-0318577_22	UniRef90_A0A0U1L376	511.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0318577_22	1485543.JMME01000020_gene791	590.0	0	Membrane	N/A
COG	UHGV-0318577_22	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0318577_22	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318577_24	1232428.CAVO010000067_gene424	118.0	4.91e-27	N/A	N/A
PHROG	UHGV-0318577_25	phrog_1328	133.1	9.90001e-40	major head protein	head and packaging
UniRef90	UHGV-0318577_25	UniRef90_UPI0004838F8E	369.0	0	N/A	N/A
eggNOG-mapper	UHGV-0318577_25	1485543.JMME01000020_gene788	369.0	0	N/A	N/A
Pfam	UHGV-0318577_25	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0318577_25	PF17236,MF_04133,NF033394,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0318577_27	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318577_28	1485543.JMME01000020_gene785	139.0	3.45e-40	N/A	N/A
structural_annotation	UHGV-0318577_28	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318577_29	1232428.CAVO010000067_gene421	383.0	0	cellulase activity	N/A
COG	UHGV-0318577_29	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0318577_29	PF18001,PF01828,PF16389,MF_01905,NF010681,COG3401,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_30	phrog_5417	86.9	2.1e-25	N/A	unknown function
UniRef90	UHGV-0318577_30	UniRef90_H8FY63	167.0	0	Putative BcepGomrgp18	N/A
eggNOG-mapper	UHGV-0318577_30	1459636.NTE_01434	79.0	3.06e-16	N/A	N/A
structural_annotation	UHGV-0318577_30	PF12571	N/A	N/A	N/A	N/A
UniRef90	UHGV-0318577_31	UniRef90_UPI000631D3F9	70.5	0.00000000195	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0318577_31	1150626.PHAMO_80093	107.0	2.66e-22	extracellular polysaccharide biosynthetic process	N/A
COG	UHGV-0318577_31	COG3206	N/A	N/A	Exopolysaccharide export protein/domain GumC/Wzc1	N/A
structural_annotation	UHGV-0318577_31	PF05660,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_32	phrog_5302	254.0	0	tail protein	tail
UniRef90	UHGV-0318577_32	UniRef90_A0A345BPB9	192.0	0	Lectin	N/A
eggNOG-mapper	UHGV-0318577_32	1508644.SFBmNL_00815	94.0	5.79e-17	N/A	N/A
structural_annotation	UHGV-0318577_32	PF16323	N/A	N/A	N/A	N/A
KOfam	UHGV-0318577_33	K00986	128.1	1e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0318577_33	phrog_1423	220.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318577_33	UniRef90_A0A316SJD4	583.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0318577_33	742741.HMPREF9475_00439	199.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0318577_33	icity0040	108.7	7.4e-32	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0318577_33	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0318577_33	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0318577_33	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0318577_34	phrog_20201	42.0	0.000000000018	N/A	unknown function
UniRef90	UHGV-0318577_35	UniRef90_A0A316SBF6	68.9	0.0000000000000151	XkdX family protein	N/A
eggNOG-mapper	UHGV-0318577_35	411468.CLOSCI_01507	47.0	0.00000135	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0318577_35	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0318577_35	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0318577_35	PF09693,TIGR01669	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318577_36	1401067.HMPREF0872_03755	204.0	0	N/A	N/A
structural_annotation	UHGV-0318577_36	PF11134,MF_03008,NF010237,TIGR04362,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0318577_37	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-0318577_38	UniRef90_A0A1G6NNF8	270.0	0	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-0318577_38	1232428.CAVO010000067_gene416	322.0	0	N/A	N/A
Pfam	UHGV-0318577_38	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
structural_annotation	UHGV-0318577_38	PF01079,NF038136	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318577_39	665942.HMPREF1022_00152	83.2	0.0000000000001	N/A	N/A
eggNOG-mapper	UHGV-0318577_40	1123288.SOV_2c10740	187.0	0	N/A	N/A
Pfam	UHGV-0318577_40	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT