UHGV-0321884 (vOTU-050564)

Viral Genome: UHGV-0321884

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0321884
vOTU ID	vOTU-050564
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR8490392_141_106149_round8-12~4025855
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.52
Jumbo phage	No

Genome content
Genome length (bp)	38,931
GC content	58.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	94%
Average CDS length (bps)	553.73
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0321884_4	PF02001,MF_00674,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0321884_5	K01447	109.0	6.4e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0321884_5	phrog_1794	105.4	7.1e-31	amidase	lysis
UniRef90	UHGV-0321884_5	UniRef90_N1ZHY5	132.0	2.16e-34	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_5	97138.C820_00251	132.0	3.62e-35	Ami_2	N/A
Pfam	UHGV-0321884_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0321884_5	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0321884_5	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_6	phrog_443	56.8	6.8e-16	holin	lysis
UniRef90	UHGV-0321884_6	UniRef90_A0A4R1QPE5	91.7	4.38e-23	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0321884_6	1469948.JPNB01000002_gene3855	91.7	7.34e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0321884_6	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0321884_6	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_7	phrog_937	46.0	0.00000000000079	hemolysin	other
eggNOG-mapper	UHGV-0321884_9	1519439.JPJG01000060_gene1895	60.8	0.00000000432	N/A	N/A
structural_annotation	UHGV-0321884_9	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_11	phrog_10993	61.8	8.6e-18	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0321884_11	UniRef90_UPI000834AF98	100.0	2.81e-21	N/A	N/A
eggNOG-mapper	UHGV-0321884_11	742738.HMPREF9460_02534	63.9	0.00000000856	N/A	N/A
Pfam	UHGV-0321884_11	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0321884_11	PF19789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321884_12	1519439.JPJG01000060_gene1892	51.2	0.00000425	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0321884_12	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0321884_13	PF16408,NF033510	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_14	phrog_10898	286.9	0	N/A	unknown function
UniRef90	UHGV-0321884_14	UniRef90_A0A7U3NJT3	187.0	0	Putative Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_14	717606.PaecuDRAFT_2136	68.2	0.000000000207	S-layer homology domain	N/A
COG	UHGV-0321884_14	COG1520	N/A	N/A	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	N/A
structural_annotation	UHGV-0321884_14	PF19081,PF15418,MF_01905,NF032891,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_16	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_18	PF18614,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_19	phrog_26795	135.6	1.2e-40	N/A	unknown function
eggNOG-mapper	UHGV-0321884_19	1195236.CTER_5102	152.0	5.67e-40	N/A	N/A
structural_annotation	UHGV-0321884_19	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_20	phrog_37549	77.1	1e-26	virion structural protein	head and packaging
UniRef90	UHGV-0321884_20	UniRef90_A0A3D0W045	240.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_20	1195236.CTER_5103	128.0	3.18e-28	N/A	N/A
structural_annotation	UHGV-0321884_20	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_21	phrog_8462	125.9	4.7e-37	tail length tape measure protein	tail
UniRef90	UHGV-0321884_21	UniRef90_UPI00098F054B	218.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0321884_21	1195236.CTER_5104	207.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0321884_21	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0321884_21	TIGR01760,NF033928	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_22	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_23	phrog_88	88.6	7.7e-26	major tail protein	tail
UniRef90	UHGV-0321884_23	UniRef90_S0FUN2	117.0	5.96e-30	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0321884_23	1195236.CTER_5106	117.0	1e-30	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0321884_23	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0321884_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_23	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_24	phrog_5	45.0	0.0000000000023	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0321884_24	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321884_25	1487921.DP68_11350	56.6	0.00000000623	N/A	N/A
structural_annotation	UHGV-0321884_25	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_26	phrog_1951	74.1	1.4e-21	head-tail adaptor	connector
UniRef90	UHGV-0321884_26	UniRef90_A0A1F8UNT5	63.5	0.0000000000494	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0321884_26	1094508.Tsac_2422	53.1	0.000000113	Phage head-tail joining protein	N/A
Pfam	UHGV-0321884_26	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0321884_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0321884_26	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0321884_26	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_27	phrog_5223	45.9	0.00000000000076	neck protein	connector
UniRef90	UHGV-0321884_27	UniRef90_E6MGY0	60.1	0.000000000886	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0321884_27	887929.HMP0721_1264	60.1	0.000000000149	N/A	N/A
PHROG	UHGV-0321884_28	phrog_10	192.1	0	major head protein	head and packaging
UniRef90	UHGV-0321884_28	UniRef90_UPI00189AE5FE	414.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0321884_28	1280689.AUJC01000011_gene1521	392.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0321884_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0321884_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0321884_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0321884_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0321884_29	K01358	130.0	2.8e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0321884_29	phrog_94	195.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0321884_29	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0321884_29	1280689.AUJC01000011_gene1520	182.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0321884_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0321884_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0321884_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_30	phrog_12	180.6	0	portal protein	head and packaging
UniRef90	UHGV-0321884_30	UniRef90_C4GAS6	501.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0321884_30	626523.GCWU000342_01027	501.0	0	Portal protein	N/A
Pfam	UHGV-0321884_30	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0321884_30	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0321884_30	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_31	phrog_9	376.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0321884_31	UniRef90_A0A1Y3W5R1	785.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0321884_31	1203606.HMPREF1526_00981	732.0	0	Terminase	N/A
Pfam	UHGV-0321884_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0321884_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0321884_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0321884_31	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_32	phrog_1066	130.3	6.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0321884_32	1382358.JHVN01000024_gene1703	125.0	1.67e-35	N/A	N/A
structural_annotation	UHGV-0321884_32	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_33	phrog_119	46.5	0.00000000000046	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321884_33	UniRef90_A0A174XSZ8	127.0	1.02e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0321884_33	1235793.C809_01915	120.0	1.22e-33	HNH endonuclease	N/A
COG	UHGV-0321884_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0321884_34	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0321884_34	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_35	phrog_3584	114.3	9.5e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0321884_35	537013.CLOSTMETH_02141	74.3	0.000000000000182	N/A	N/A
structural_annotation	UHGV-0321884_35	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_36	phrog_21498	298.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0321884_36	78346.BRUM_0376	258.0	0	DNA binding	N/A
COG	UHGV-0321884_36	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0321884_36	PF05869,TIGR01712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_37	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_41	phrog_374	55.4	0.0000000000000012	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0321884_41	1423807.BACO01000037_gene1103	68.6	0.00000000000118	N/A	N/A
PHROG	UHGV-0321884_43	phrog_190	98.4	7.7e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321884_43	UniRef90_UPI0006C2AC63	125.0	7.05e-34	N/A	N/A
eggNOG-mapper	UHGV-0321884_43	693746.OBV_25250	119.0	3.28e-32	N/A	N/A
Pfam	UHGV-0321884_43	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0321884_43	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_45	phrog_38832	63.2	1.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0321884_45	665956.HMPREF1032_00143	84.3	8.22e-19	N/A	N/A
structural_annotation	UHGV-0321884_45	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_46	phrog_38832	75.7	4.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0321884_46	665956.HMPREF1032_00143	88.6	1.47e-19	N/A	N/A
PHROG	UHGV-0321884_47	phrog_355	59.9	4.4e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321884_47	UniRef90_A0A413FXK8	110.0	1.7e-29	N/A	N/A
eggNOG-mapper	UHGV-0321884_47	573061.Clocel_3558	77.8	2.35e-17	N/A	N/A
Pfam	UHGV-0321884_47	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0321884_47	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0321884_47	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_48	phrog_3136	127.9	2.8e-38	N/A	unknown function
UniRef90	UHGV-0321884_48	UniRef90_UPI001C00EDA4	127.0	1.36e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_48	1235793.C809_02645	64.7	0.000000000323	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-0321884_48	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0321884_48	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0321884_48	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_49	phrog_15609	234.9	0	N/A	unknown function
UniRef90	UHGV-0321884_49	UniRef90_UPI001246A313	103.0	9.3e-22	N/A	N/A
eggNOG-mapper	UHGV-0321884_49	1501230.ET33_21155	124.0	4.59e-30	N/A	N/A
Pfam	UHGV-0321884_49	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0321884_49	COG0188	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	N/A
structural_annotation	UHGV-0321884_49	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_50	phrog_8470	247.8	0	N/A	unknown function
UniRef90	UHGV-0321884_50	UniRef90_UPI0002D9F0BD	307.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_50	1007096.BAGW01000031_gene117	307.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0321884_50	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0321884_50	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_51	phrog_36399	53.8	0.0000000000000039	N/A	unknown function
structural_annotation	UHGV-0321884_54	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_55	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321884_57	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0321884_60	K18830	60.5	4e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0321884_60	phrog_8	53.7	0.0000000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-0321884_60	UniRef90_A0A844DFR0	137.0	2.34e-39	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_60	748224.HMPREF9436_01444	130.0	4.26e-37	N/A	N/A
PADLOC	UHGV-0321884_60	retron_type_VI_hth_cluster2_1	46.3	0.00000000000086	N/A	Retron
Pfam	UHGV-0321884_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0321884_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0321884_60	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0321884_62	K02342	189.8	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0321884_62	phrog_192	167.0	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321884_62	UniRef90_UPI001897CA3A	333.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0321884_62	1437608.BBIA_1844	278.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-0321884_62	cd06127	144.6	7.80523e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0321884_62	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0321884_62	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0321884_62	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0321884_62	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0321884_62	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
PHROG	UHGV-0321884_63	phrog_10292	78.1	4.9e-23	N/A	unknown function
UniRef90	UHGV-0321884_63	UniRef90_A0A416W984	105.0	2.15e-26	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0321884_63	1519439.JPJG01000059_gene1953	82.4	1.14e-17	TM2 domain	N/A
Pfam	UHGV-0321884_63	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0321884_63	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0321884_63	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0321884_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0321884_64	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0321884_64	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0321884_65	K06400	247.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0321884_65	phrog_95	264.5	0	integrase	integration and excision
UniRef90	UHGV-0321884_65	UniRef90_G9YSD9	412.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0321884_65	1121344.JHZO01000001_gene439	404.0	0	resolvase	N/A
Pfam	UHGV-0321884_65	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0321884_65	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0321884_65	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0321884_65	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0321884_65	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A