UHGV-0323049 (vOTU-060947)

Viral Genome: UHGV-0323049

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0323049
vOTU ID	vOTU-060947
Representative Genome?	Yes
Source	mMGE
Original genome ID	k119_32570_round14~1605656
Associated BioSample	SAMN06164523
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9752
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.57
Jumbo phage	No

Genome content
Genome length (bp)	28,216
GC content	40.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	91%
Average CDS length (bps)	610.50
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0323049_1	UniRef90_UPI001897B0FF	72.4	0.00000000000000252	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0323049_1	1121289.JHVL01000079_gene1187	59.3	0.0000000000602	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0323049_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0323049_1	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0323049_2	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0323049_2	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0323049_2	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0323049_2	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0323049_2	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0323049_2	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_7	phrog_2872	215.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0323049_7	UniRef90_UPI000C080C89	252.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0323049_7	1415774.U728_1119	244.0	0	AAA domain	N/A
structural_annotation	UHGV-0323049_7	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_8	phrog_18107	86.7	3.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0323049_8	476272.RUMHYD_02831	166.0	0	N/A	N/A
structural_annotation	UHGV-0323049_8	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_9	phrog_3490	129.1	2.9e-38	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0323049_9	UniRef90_R6N0P8	218.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0323049_9	476272.RUMHYD_01740	207.0	0	ERCC4 domain	N/A
Pfam	UHGV-0323049_9	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0323049_9	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0323049_9	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_10	phrog_2514	80.6	1.9e-23	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0323049_10	UniRef90_A0A318KSV9	94.7	5.18e-20	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0323049_10	445974.CLORAM_02950	107.0	1.29e-25	N/A	N/A
Pfam	UHGV-0323049_10	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-0323049_10	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_11	K02314	226.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0323049_11	phrog_19	247.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0323049_11	UniRef90_A0A1C6JHY9	261.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0323049_11	1280689.AUJC01000011_gene1502	151.0	1.51e-38	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0323049_11	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0323049_11	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0323049_11	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0323049_11	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_14	K18830	52.6	0.000000000000012	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0323049_14	phrog_8	63.8	3.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0323049_14	UniRef90_A0A374N9T4	116.0	4.54e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0323049_14	935845.JADQ01000015_gene3206	76.6	5.17e-17	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0323049_14	retron_type_VI_hth_cluster2_1	40.5	0.000000000073	N/A	Retron
Pfam	UHGV-0323049_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0323049_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0323049_14	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0323049_16	UniRef90_A0A374MXG7	102.0	7.36e-26	XRE family transcriptional regulator	N/A
Pfam	UHGV-0323049_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0323049_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0323049_17	phrog_119	55.6	7.9e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0323049_17	UniRef90_A0A374N9T6	225.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0323049_17	1235793.C809_01915	117.0	3.18e-32	HNH endonuclease	N/A
Pfam	UHGV-0323049_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0323049_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0323049_18	phrog_1066	112.7	1.9e-33	N/A	unknown function
UniRef90	UHGV-0323049_18	UniRef90_A0A0D0SQQ8	83.6	2.83e-18	N/A	N/A
eggNOG-mapper	UHGV-0323049_18	1203606.HMPREF1526_00982	102.0	1.08e-26	N/A	N/A
PHROG	UHGV-0323049_19	phrog_9	393.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0323049_19	UniRef90_A0A374NB45	981.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0323049_19	1235793.C809_01917	727.0	0	Phage Terminase	N/A
Pfam	UHGV-0323049_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0323049_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0323049_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0323049_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_20	phrog_12	180.8	0	portal protein	head and packaging
UniRef90	UHGV-0323049_20	UniRef90_A0A374NAE1	763.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0323049_20	626523.GCWU000342_01027	410.0	0	Portal protein	N/A
Pfam	UHGV-0323049_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0323049_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0323049_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_21	K01358	117.6	1.5e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0323049_21	phrog_94	184.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0323049_21	UniRef90_A0A374NBM3	399.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0323049_21	1203606.HMPREF1526_00979	178.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0323049_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0323049_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0323049_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_22	phrog_10	149.7	2.52234e-44	major head protein	head and packaging
UniRef90	UHGV-0323049_22	UniRef90_A0A374N9V9	732.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0323049_22	1280689.AUJC01000011_gene1521	332.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0323049_22	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0323049_22	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0323049_22	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0323049_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_23	phrog_5223	55.0	0.0000000000000012	neck protein	connector
eggNOG-mapper	UHGV-0323049_23	931626.Awo_c31020	48.5	0.0000044	N/A	N/A
NCBIFam	UHGV-0323049_23	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0323049_23	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_24	phrog_1951	93.1	1.8e-27	head-tail adaptor	connector
UniRef90	UHGV-0323049_24	UniRef90_A0A374MZF9	209.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0323049_24	1414720.CBYM010000040_gene1649	66.2	0.000000000000996	head-tail adaptor	N/A
COG	UHGV-0323049_24	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0323049_24	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0323049_25	UniRef90_UPI001A9B6FBF	145.0	2.88948e-42	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0323049_25	1414720.CBYM010000040_gene1650	136.0	3.62e-39	N/A	N/A
structural_annotation	UHGV-0323049_25	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0323049_26	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_27	phrog_885	133.9	1e-39	major tail protein	tail
UniRef90	UHGV-0323049_27	UniRef90_Q894J4	162.0	0	Conserved protein	N/A
eggNOG-mapper	UHGV-0323049_27	1321814.HMPREF9089_00935	173.0	0	N/A	N/A
structural_annotation	UHGV-0323049_27	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_28	phrog_1021	50.5	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0323049_28	1321778.HMPREF1982_03556	49.7	0.00000561	N/A	N/A
PHROG	UHGV-0323049_30	phrog_23464	256.5	0	N/A	unknown function
UniRef90	UHGV-0323049_30	UniRef90_A0A1C6JGQ9	181.0	1.4013e-45	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0323049_30	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-0323049_30	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0323049_30	COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0323049_31	UniRef90_A0A1G5CPA2	122.0	2.54e-30	Phage-related protein	N/A
eggNOG-mapper	UHGV-0323049_31	1246.JMEA01000006_gene51	69.7	0.000000000024	phage tail	N/A
COG	UHGV-0323049_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0323049_31	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_32	phrog_1067	144.8	5.29691e-43	minor head protein	head and packaging
UniRef90	UHGV-0323049_32	UniRef90_A0A348ZBV6	179.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0323049_32	1160721.RBI_I01574	129.0	1.11e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-0323049_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0323049_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0323049_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0323049_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0323049_33	411476.BACOVA_04955	177.0	0	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0323049_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0323049_33	PF16255	N/A	N/A	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL_lke
COG	UHGV-0323049_33	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
PHROG	UHGV-0323049_35	phrog_1863	68.8	1.6e-20	N/A	unknown function
UniRef90	UHGV-0323049_35	UniRef90_UPI001F223E8B	98.2	3.45e-25	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0323049_35	428125.CLOLEP_01781	71.2	0.00000000000000217	N/A	N/A
PHROG	UHGV-0323049_36	phrog_443	64.3	3.1e-18	holin	lysis
UniRef90	UHGV-0323049_36	UniRef90_R6R2Q3	90.9	1.01e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0323049_36	1298920.KI911353_gene2669	83.6	1.38e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0323049_36	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0323049_36	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_37	phrog_18591	131.1	5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0323049_37	1230343.CANP01000040_gene3044	187.0	0	N/A	N/A
PHROG	UHGV-0323049_38	phrog_918	114.6	3.3e-34	N/A	unknown function
UniRef90	UHGV-0323049_38	UniRef90_UPI00164AB9AF	124.0	1.54e-35	N/A	N/A
eggNOG-mapper	UHGV-0323049_38	1504823.CCMM01000008_gene1021	117.0	2.22e-33	N/A	N/A
Pfam	UHGV-0323049_38	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0323049_38	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_39	K01447	57.2	3.7e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0323049_39	phrog_20388	301.8	0	endolysin	lysis
UniRef90	UHGV-0323049_39	UniRef90_A0A374N1L8	540.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0323049_39	1203606.HMPREF1526_00253	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0323049_39	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0323049_39	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0323049_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0323049_39	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_40	K14059	155.4	0	int; integrase	N/A
PHROG	UHGV-0323049_40	phrog_1	169.5	0	integrase	integration and excision
UniRef90	UHGV-0323049_40	UniRef90_A0A412L7T7	690.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0323049_40	1540257.JQMW01000011_gene2033	323.0	0	Phage integrase family	N/A
Pfam	UHGV-0323049_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0323049_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0323049_40	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0323049_41	phrog_5978	121.5	6.1e-36	N/A	unknown function
UniRef90	UHGV-0323049_41	UniRef90_A0A2N0UXR1	790.0	0	Adenosine monophosphate-protein transferase SoFic	N/A
eggNOG-mapper	UHGV-0323049_41	936375.HMPREF1152_1541	358.0	0	Filamentation induced by cAMP protein fic	N/A
Pfam	UHGV-0323049_41	PF02661	N/A	N/A	Fic/DOC family	Fic
Pfam	UHGV-0323049_41	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0323049_41	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0323049_41	PF07183,MF_01911,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0323049_42	K01356	99.8	4.4e-29	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0323049_42	phrog_4	87.3	2.4e-25	transcriptional repressor	transcription regulation
UniRef90	UHGV-0323049_42	UniRef90_A0A2N0UXR0	279.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0323049_42	246199.CUS_5911	114.0	1.63e-29	N/A	N/A
Pfam	UHGV-0323049_42	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0323049_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0323049_42	PF00717,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A