UHGV-0328630 (vOTU-050653)

Viral Genome: UHGV-0328630

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0328630
vOTU ID	vOTU-050653
Representative Genome?	Yes
Source	mMGE
Original genome ID	k99_137694_round1256~5066073
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9775
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	30.5
Jumbo phage	No

Genome content
Genome length (bp)	33,876
GC content	60.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	95%
Average CDS length (bps)	606.79
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0328630_1	phrog_3584	53.9	0.000000000000003	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0328630_1	742738.HMPREF9460_04063	157.0	0	N/A	N/A
KOfam	UHGV-0328630_9	K03497	78.9	9.9e-23	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0328630_9	phrog_27290	341.2	0	N/A	unknown function
UniRef90	UHGV-0328630_9	UniRef90_UPI0003130F10	295.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_9	1007096.BAGW01000033_gene1613	295.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0328630_9	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0328630_9	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0328630_9	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_10	K03496	183.6	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0328630_10	phrog_164	142.3	3.20057e-42	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_10	UniRef90_UPI000318E277	301.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0328630_10	1007096.BAGW01000033_gene1614	292.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0328630_10	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0328630_10	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0328630_10	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_12	K02314	258.8	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0328630_12	phrog_19	224.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_12	UniRef90_U2SBV6	293.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0328630_12	1226322.HMPREF1545_00095	293.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0328630_12	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0328630_12	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0328630_12	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0328630_12	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_13	phrog_270	100.9	1.7e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_13	UniRef90_UPI00195D2180	145.0	1.1e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_13	742738.HMPREF9460_00851	145.0	7.98e-40	Helix-turn-helix domain	N/A
Pfam	UHGV-0328630_13	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0328630_13	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0328630_13	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0328630_14	PF21327	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_17	K22300	41.6	0.000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0328630_17	phrog_6499	120.0	1e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0328630_17	UniRef90_G9YL68	140.0	1.5e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0328630_17	742738.HMPREF9460_00847	140.0	1.76e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0328630_17	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0328630_17	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0328630_17	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_18	K22300	58.0	2.2e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0328630_18	phrog_4836	40.3	0.000000000044	CII-like regulator	transcription regulation
UniRef90	UHGV-0328630_18	UniRef90_UPI000F0D19B9	54.3	0.0000000308	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_18	1226322.HMPREF1545_02518	48.9	0.00000604	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0328630_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0328630_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0328630_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_21	K02342	141.6	5.5001e-42	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0328630_21	phrog_192	130.8	7.4e-39	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_21	UniRef90_UPI001873C260	144.0	1.08e-36	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-0328630_21	1410674.JNKU01000049_gene1948	99.8	2.42e-21	EXOIII	N/A
PADLOC	UHGV-0328630_21	cd06127	111.8	1.1e-32	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0328630_21	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0328630_21	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0328630_21	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0328630_21	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
UniRef90	UHGV-0328630_22	UniRef90_A0A1Y3ZTC9	104.0	5.11e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0328630_22	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0328630_22	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0328630_22	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0328630_24	1262449.CP6013_2082	167.0	0	N/A	N/A
structural_annotation	UHGV-0328630_24	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_25	K14059	149.9	2.8026e-44	int; integrase	N/A
PHROG	UHGV-0328630_25	phrog_1	148.3	5.46506e-44	integrase	integration and excision
UniRef90	UHGV-0328630_25	UniRef90_UPI001EDEB0AD	276.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0328630_25	1226322.HMPREF1545_00144	251.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0328630_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0328630_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0328630_25	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_26	K07726	41.1	0.000000000031	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0328630_26	phrog_25567	62.8	4e-18	N/A	unknown function
UniRef90	UHGV-0328630_26	UniRef90_UPI00164AED9E	134.0	3.43e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_26	1235798.C817_04600	95.1	1.19e-23	N/A	N/A
Pfam	UHGV-0328630_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0328630_26	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_30	K01448	48.6	0.00000000000011	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0328630_30	phrog_435	71.3	1.8e-20	endolysin	lysis
UniRef90	UHGV-0328630_30	UniRef90_A0A810PUG7	205.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_30	994573.T472_0212035	80.5	0.00000000000000329	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0328630_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0328630_30	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0328630_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0328630_30	PF01520,PF01471,MF_00562,TIGR02883,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_31	phrog_881	91.3	5e-27	holin	lysis
UniRef90	UHGV-0328630_31	UniRef90_UPI00189D3A4F	84.7	3.24e-20	phage holin	N/A
eggNOG-mapper	UHGV-0328630_31	742740.HMPREF9474_02251	82.0	7.04e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0328630_31	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0328630_31	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_32	phrog_4105	99.1	2.7e-29	N/A	unknown function
UniRef90	UHGV-0328630_32	UniRef90_A0A8D9UHA9	140.0	3.20001e-41	Holin protein	N/A
eggNOG-mapper	UHGV-0328630_32	742733.HMPREF9469_05011	117.0	5.98e-33	N/A	N/A
eggNOG-mapper	UHGV-0328630_33	1408437.JNJN01000002_gene1389	57.0	0.00000586	N/A	N/A
structural_annotation	UHGV-0328630_33	PF10651,TIGR02059	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_34	phrog_1067	271.0	0	minor head protein	head and packaging
UniRef90	UHGV-0328630_34	UniRef90_A0A7G9G6Y3	391.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0328630_34	1123263.AUKY01000068_gene489	305.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0328630_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0328630_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0328630_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0328630_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_35	phrog_33	63.7	4.6e-18	distal tail protein Dit	tail
UniRef90	UHGV-0328630_35	UniRef90_A0A173Z1X4	183.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0328630_35	536233.CLO_0897	94.7	7.41e-21	tail component	N/A
COG	UHGV-0328630_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0328630_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_36	phrog_3981	253.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0328630_36	UniRef90_A0A373CK98	295.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0328630_36	1216932.CM240_0625	332.0	0	tape measure	N/A
COG	UHGV-0328630_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0328630_36	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_39	phrog_88	98.4	7.3e-29	major tail protein	tail
UniRef90	UHGV-0328630_39	UniRef90_A0A1C6CIL7	132.0	2.98e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0328630_39	33035.JPJF01000039_gene278	72.8	0.000000000000407	N/A	N/A
NCBIFam	UHGV-0328630_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0328630_39	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_40	phrog_5	45.5	0.0000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0328630_40	UniRef90_R6UNR2	130.0	1.15e-35	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0328630_40	908340.HMPREF9406_2573	130.0	1.92e-36	N/A	N/A
structural_annotation	UHGV-0328630_40	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0328630_41	1235798.C817_04588	84.3	1.5e-19	N/A	N/A
structural_annotation	UHGV-0328630_41	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_42	phrog_19734	119.4	2e-35	N/A	unknown function
UniRef90	UHGV-0328630_42	UniRef90_A0A6I7GNS7	130.0	1.77e-36	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0328630_42	1235798.C817_04587	62.4	0.0000000000811	N/A	N/A
structural_annotation	UHGV-0328630_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_43	phrog_749	69.0	5.6e-20	N/A	unknown function
UniRef90	UHGV-0328630_43	UniRef90_UPI001C0FB8A8	58.9	0.00000000272	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0328630_43	349161.Dred_2603	78.6	1.1e-17	N/A	N/A
PHROG	UHGV-0328630_44	phrog_10	137.4	1.50001e-40	major head protein	head and packaging
UniRef90	UHGV-0328630_44	UniRef90_G9YSC0	687.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_44	1235792.C808_00086	421.0	0	Phage capsid family	N/A
Pfam	UHGV-0328630_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0328630_44	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0328630_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0328630_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0328630_44	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_45	K01358	133.4	2.3e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0328630_45	phrog_94	249.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0328630_45	UniRef90_A0A1Y4BT12	350.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0328630_45	349161.Dred_2605	301.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0328630_45	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0328630_45	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0328630_45	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_46	phrog_12	113.9	6.7e-34	portal protein	head and packaging
UniRef90	UHGV-0328630_46	UniRef90_G9YSB8	507.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0328630_46	610130.Closa_0742	296.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0328630_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0328630_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0328630_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0328630_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_47	phrog_9	248.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0328630_47	UniRef90_UPI0018737C02	902.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0328630_47	1235792.C808_00083	595.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0328630_47	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0328630_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0328630_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0328630_47	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_48	phrog_5110	60.5	1.8e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0328630_48	UniRef90_UPI00195E8788	124.0	3.32e-33	P27 family phage terminase small subunit	N/A
Pfam	UHGV-0328630_48	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0328630_48	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
UniRef90	UHGV-0328630_49	UniRef90_A0A1V6DKY6	74.7	0.0000000000688	Radical SAM superfamily protein	N/A
eggNOG-mapper	UHGV-0328630_49	246197.MXAN_1452	65.5	0.0000000151	Radical SAM	N/A
COG	UHGV-0328630_49	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-0328630_49	PF02310,MF_01864,TIGR03960,COG1032	N/A	N/A	N/A	N/A
KOfam	UHGV-0328630_50	K03497	48.3	0.00000000000019	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0328630_50	phrog_620	132.3	4.1e-40	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_50	UniRef90_A0A810PZK9	196.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_50	173707.Q938L7_9CAUD	110.0	2.09e-28	helicase activity	N/A
PADLOC	UHGV-0328630_50	MTase_II_00015	82.8	7e-24	Type II methyltransferase	RM
Pfam	UHGV-0328630_50	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0328630_50	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0328630_51	phrog_119	71.7	9.3e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0328630_51	UniRef90_G9YSB5	149.0	1.4013e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_51	926561.KB900623_gene763	84.7	9.9e-20	HNH nucleases	N/A
Pfam	UHGV-0328630_51	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0328630_51	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0328630_52	UniRef90_UPI001D014F8E	72.8	0.00000000000000121	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0328630_52	1226322.HMPREF1545_00110	67.4	0.0000000000000352	Cysteine-rich KTR	N/A
Pfam	UHGV-0328630_52	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0328630_52	PF14205	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0328630_53	742738.HMPREF9460_04063	87.0	3.17e-19	N/A	N/A