UHGV-0336090 (vOTU-004910)

Viral Genome: UHGV-0336090

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0336090
vOTU ID	vOTU-004910
Representative Genome?	Yes
Source	mMGE
Original genome ID	k119_65984_round347~3334915
Associated BioSample	SAMN10285293
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.75
Jumbo phage	No

Genome content
Genome length (bp)	44,426
GC content	53.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	68
CDS density	91%
Average CDS length (bps)	591.88
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0336090_1	UniRef90_UPI00166A7EE7	247.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0336090_3	658659.HMPREF0983_00103	113.0	1.02e-29	N/A	N/A
structural_annotation	UHGV-0336090_3	PF18847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336090_4	PF03869,NF010256	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_5	K07474	49.0	0.0000000000002	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0336090_5	phrog_51	59.3	2.2e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0336090_5	UniRef90_A0A2V2FED9	243.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0336090_5	702450.CUW_0530	102.0	1.62e-26	Terminase Small Subunit	N/A
Pfam	UHGV-0336090_5	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0336090_5	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0336090_5	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_6	K06909	232.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0336090_6	phrog_3717	209.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0336090_6	UniRef90_A0A417HVY4	993.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0336090_6	445971.ANASTE_00711	519.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0336090_6	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0336090_6	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0336090_6	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0336090_6	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_7	phrog_156	246.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0336090_7	1519439.JPJG01000060_gene1886	540.0	0	N/A	N/A
structural_annotation	UHGV-0336090_7	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_10	phrog_35275	85.7	6.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0336090_10	693746.OBV_23910	101.0	3.37e-22	N/A	N/A
PHROG	UHGV-0336090_11	phrog_24113	51.6	0.000000000000012	N/A	unknown function
structural_annotation	UHGV-0336090_11	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_12	phrog_371	118.0	6.6e-35	major head protein	head and packaging
UniRef90	UHGV-0336090_12	UniRef90_UPI00164C0E21	521.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0336090_12	1226322.HMPREF1545_03848	284.0	0	N/A	N/A
Pfam	UHGV-0336090_12	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0336090_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_13	phrog_13046	53.7	0.0000000000000022	N/A	unknown function
eggNOG-mapper	UHGV-0336090_13	693746.OBV_23880	87.8	1.24e-18	N/A	N/A
structural_annotation	UHGV-0336090_13	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_14	phrog_3287	135.4	1.4e-40	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0336090_14	1232449.BAHV02000016_gene1816	414.0	0	N/A	N/A
structural_annotation	UHGV-0336090_14	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_15	phrog_17134	80.3	1.1e-23	N/A	unknown function
UniRef90	UHGV-0336090_15	UniRef90_A0A3E2XVW9	222.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0336090_15	1408437.JNJN01000002_gene1389	92.0	3.86e-17	N/A	N/A
Pfam	UHGV-0336090_15	PF16355	N/A	N/A	N/A	DUF4982
Pfam	UHGV-0336090_15	PF12674	N/A	N/A	Putative zinc ribbon domain	Zn_ribbon_2
PHROG	UHGV-0336090_16	phrog_9915	43.0	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0336090_16	1384065.JAGS01000001_gene2507	64.3	0.0000000166	domain, Protein	N/A
Pfam	UHGV-0336090_16	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0336090_16	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0336090_16	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
PHROG	UHGV-0336090_19	phrog_297	46.8	0.00000000000044	holin	lysis
UniRef90	UHGV-0336090_19	UniRef90_A0A417HAK5	180.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0336090_19	1408437.JNJN01000039_gene392	103.0	3.7e-28	COG COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0336090_19	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0336090_19	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0336090_19	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336090_19	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_20	K01447	109.5	4e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0336090_20	phrog_670	146.2	2.8026e-43	endolysin	lysis
UniRef90	UHGV-0336090_20	UniRef90_A0A417HVY1	471.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0336090_20	1408437.JNJN01000008_gene890	229.0	0	Ami_2	N/A
Pfam	UHGV-0336090_20	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0336090_20	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0336090_20	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336090_21	UniRef90_UPI0004E194C7	77.8	1.47e-17	LuxR C-terminal-related transcriptional regulator	N/A
structural_annotation	UHGV-0336090_21	PF13404,TIGR01636	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0336090_23	1408437.JNJN01000043_gene805	129.0	6.22e-37	N/A	N/A
PHROG	UHGV-0336090_25	phrog_16490	72.4	5.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0336090_25	1408437.JNJN01000043_gene803	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0336090_26	1408437.JNJN01000043_gene802	111.0	4.81e-30	N/A	N/A
eggNOG-mapper	UHGV-0336090_27	1408437.JNJN01000043_gene801	145.0	9.65004e-41	N/A	N/A
KOfam	UHGV-0336090_29	K19304	132.7	4.1e-39	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0336090_29	phrog_7767	78.6	8e-24	metallo-endopeptidase	other
UniRef90	UHGV-0336090_29	UniRef90_A0A845MXW8	3875.0	0	Peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0336090_29	1408437.JNJN01000060_gene452	1189.0	0	heme binding	N/A
Pfam	UHGV-0336090_29	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0336090_29	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-0336090_30	K14059	198.5	0	int; integrase	N/A
PHROG	UHGV-0336090_30	phrog_1	187.3	0	integrase	integration and excision
UniRef90	UHGV-0336090_30	UniRef90_A0A417H7X9	751.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0336090_30	1408437.JNJN01000084_gene1284	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0336090_30	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0336090_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0336090_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0336090_30	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
COG	UHGV-0336090_32	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
KOfam	UHGV-0336090_33	K22299	58.1	2.1e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0336090_33	phrog_8	61.2	2.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0336090_33	UniRef90_A0A417H7V1	174.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0336090_33	742740.HMPREF9474_04360	89.0	5.15e-21	Pou domain - N-terminal to homeobox domain	N/A
Pfam	UHGV-0336090_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0336090_33	COG1395	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0336090_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0336090_34	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_44	phrog_253	122.4	3.2e-36	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_44	UniRef90_UPI00164A4E04	213.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0336090_44	1226322.HMPREF1545_04074	139.0	7.43001e-40	Siphovirus Gp157	N/A
Pfam	UHGV-0336090_44	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0336090_44	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_45	phrog_155	130.5	1.3e-38	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_45	UniRef90_UPI00068A4EBA	218.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0336090_45	357809.Cphy_2988	219.0	0	ERF superfamily	N/A
Pfam	UHGV-0336090_45	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0336090_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0336090_45	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_46	phrog_72	50.7	0.000000000000012	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_46	UniRef90_A0A8D9PDS2	107.0	2.64e-26	NinB protein	N/A
eggNOG-mapper	UHGV-0336090_46	445972.ANACOL_01825	130.0	5.52e-36	N/A	N/A
structural_annotation	UHGV-0336090_46	PF05772,NF007281	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0336090_47	397290.C810_01737	46.6	0.00000245	N/A	N/A
KOfam	UHGV-0336090_48	K07451	48.9	0.00000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0336090_48	phrog_7370	59.3	6.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_48	UniRef90_A0A845MWL0	203.0	0	HNHc domain-containing protein	N/A
Pfam	UHGV-0336090_48	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0336090_48	COG3183	N/A	N/A	Predicted restriction endonuclease, HNH family	N/A
UniRef90	UHGV-0336090_49	UniRef90_A0A845MWS0	114.0	2.04e-32	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0336090_49	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0336090_49	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_50	K03111	147.0	1.79366e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0336090_50	phrog_44	156.3	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_50	UniRef90_A0A845MW32	250.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0336090_50	1408437.JNJN01000012_gene314	206.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0336090_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0336090_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0336090_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0336090_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0336090_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_51	phrog_2514	85.2	7.7e-25	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0336090_51	397291.C804_01603	111.0	5.79e-27	DnaD domain protein	N/A
COG	UHGV-0336090_51	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0336090_51	PF10771,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_52	K01160	40.4	0.00000000008	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0336090_52	phrog_1682	82.6	5.4e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_52	UniRef90_A0A417H6W1	247.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0336090_52	697281.Mahau_0558	128.0	1.02e-36	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0336090_52	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0336090_52	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0336090_53	K00571	115.0	8.5e-34	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0336090_53	phrog_67	98.8	3.5e-29	DNA methyltransferase	other
UniRef90	UHGV-0336090_53	UniRef90_A0A2U1CFM2	420.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0336090_53	35241.Q9XJE8_BPTU2	358.0	0	helicase activity	N/A
PADLOC	UHGV-0336090_53	MTase_II_00157	91.6	1.6e-26	Type II methyltransferase	RM
Pfam	UHGV-0336090_53	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-0336090_53	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0336090_54	411473.RUMCAL_00255	83.2	3.04e-20	N/A	N/A
structural_annotation	UHGV-0336090_54	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_55	phrog_1891	87.0	8.1e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_55	UniRef90_A0A4Z0YED2	93.6	1.35e-20	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0336090_55	1273103.NM10_03261	62.8	0.0000000029	HNH endonuclease	N/A
Pfam	UHGV-0336090_55	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0336090_55	PF13392	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336090_57	UniRef90_A0A417H740	352.0	0	N/A	N/A
Pfam	UHGV-0336090_57	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0336090_58	phrog_2118	106.3	3.1e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0336090_58	UniRef90_A0A417HX51	256.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0336090_58	742740.HMPREF9474_03129	127.0	2.07e-36	HNH endonuclease	N/A
Pfam	UHGV-0336090_58	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0336090_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0336090_58	TIGR02646,COG1403	N/A	N/A	N/A	N/A
UniRef90	UHGV-0336090_59	UniRef90_A0A8D9PDK2	60.1	0.000000000934	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0336090_60	phrog_474	109.6	4.6e-32	phosphofructokinase	other
UniRef90	UHGV-0336090_60	UniRef90_A0A2V2FHD6	196.0	0	N/A	N/A
eggNOG-mapper	UHGV-0336090_60	428125.CLOLEP_01367	103.0	1.38e-26	N/A	N/A
Pfam	UHGV-0336090_60	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0336090_60	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_61	phrog_419	116.9	1.8e-34	N/A	unknown function
UniRef90	UHGV-0336090_61	UniRef90_UPI001CC11C4F	103.0	4.39e-27	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0336090_61	1134413.ANNK01000120_gene2032	103.0	4.76e-28	N/A	N/A
structural_annotation	UHGV-0336090_61	PF14083	N/A	N/A	N/A	N/A
Pfam	UHGV-0336090_62	PF01059	N/A	N/A	NADH-ubiquinone oxidoreductase chain 4, amino terminus	Oxidored_q5_N
PHROG	UHGV-0336090_63	phrog_23773	57.2	4.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0336090_63	484770.UFO1_3918	159.0	0	UMP catabolic process	N/A
COG	UHGV-0336090_63	COG0647	N/A	N/A	Ribonucleotide monophosphatase NagD, HAD superfamily	N/A
structural_annotation	UHGV-0336090_63	PF08645,TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0336090_65	phrog_25385	52.3	0.0000000000000093	N/A	unknown function
eggNOG-mapper	UHGV-0336090_65	748224.HMPREF9436_03077	54.7	0.0000000522	N/A	N/A
PHROG	UHGV-0336090_67	phrog_36	45.1	0.0000000000021	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0336090_67	862517.HMPREF9225_0469	52.8	0.000000543	sigma factor activity	N/A
COG	UHGV-0336090_67	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
Pfam	UHGV-0336090_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0336090_68	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A