UHGV-0337311 (vOTU-065169)

Viral Genome: UHGV-0337311

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0337311
vOTU ID	vOTU-065169
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR5935752_119_3155_round347~4586917
Associated BioSample	SAMN07521760
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9725
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.56
Jumbo phage	No

Genome content
Genome length (bp)	40,572
GC content	33.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	88%
Average CDS length (bps)	703.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0337311_1	K14440	67.1	1.2e-19	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0337311_1	phrog_62	187.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_1	UniRef90_A0A7L8ZJA8	377.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0337311_1	1445858.A0A060AN79_9CAUD	348.0	0	helicase activity	N/A
Pfam	UHGV-0337311_1	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
structural_annotation	UHGV-0337311_1	PF00176,PF00271,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
UniRef90	UHGV-0337311_2	UniRef90_A8MGB3	78.6	9.52e-17	VRR-NUC domain protein	N/A
eggNOG-mapper	UHGV-0337311_2	350688.Clos_1296	78.6	1.6e-17	pfam vrr-nuc	N/A
COG	UHGV-0337311_2	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
structural_annotation	UHGV-0337311_2	PF01870,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_3	phrog_864	235.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_3	UniRef90_A0A0M4RE09	276.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0337311_3	1140002.I570_00359	136.0	7.65e-32	D5 N terminal like	N/A
Pfam	UHGV-0337311_3	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0337311_3	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-0337311_3	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0337311_3	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0337311_3	PF05272,PF08706,PF02257,MF_04000,TIGR01613,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_4	phrog_27612	138.3	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0337311_4	UniRef90_A0A1G5SA14	79.7	8.47e-18	N/A	N/A
PHROG	UHGV-0337311_6	phrog_36002	84.7	1e-24	N/A	unknown function
PHROG	UHGV-0337311_7	phrog_1083	111.2	5.6e-33	N/A	unknown function
UniRef90	UHGV-0337311_7	UniRef90_A0A7L8ZJC8	171.0	0	N/A	N/A
Pfam	UHGV-0337311_7	PF06600	N/A	N/A	N/A	DUF1140
structural_annotation	UHGV-0337311_7	PF06600	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_17	phrog_695	122.6	8.6e-38	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_17	UniRef90_A0A249XUN1	126.0	2.51e-30	Bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-0337311_17	314315.LCA_0594	67.4	0.000000000647	Bifunctional DNA primase/polymerase, N-terminal	N/A
Pfam	UHGV-0337311_17	PF09250	N/A	N/A	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
Pfam	UHGV-0337311_17	PF08708	N/A	N/A	Primase C terminal 1 (PriCT-1)	PriCT_1
COG	UHGV-0337311_17	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337311_17	PF09250,PF08708,NF040561,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_18	phrog_1905	77.9	1.4e-22	N/A	unknown function
PHROG	UHGV-0337311_21	phrog_4943	63.3	6e-18	N/A	unknown function
UniRef90	UHGV-0337311_21	UniRef90_UPI0014570FEB	65.5	0.00000000000262	N/A	N/A
eggNOG-mapper	UHGV-0337311_21	768726.HMPREF9178_1073	50.8	0.000000277	N/A	N/A
Pfam	UHGV-0337311_21	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0337311_21	PF11753	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_23	K06167	58.2	1.6e-16	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-0337311_23	phrog_392	106.0	4.4e-31	metal-dependent hydrolase	other
UniRef90	UHGV-0337311_23	UniRef90_V5UQV5	171.0	0	Putative metallo-beta-lactamase domain protein	N/A
eggNOG-mapper	UHGV-0337311_23	1416012.V5UQV5_9CAUD	171.0	0	hydrolase activity	N/A
Pfam	UHGV-0337311_23	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
structural_annotation	UHGV-0337311_23	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_24	phrog_674	130.1	9.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0337311_24	1445858.A0A060AHG8_9CAUD	118.0	4.51e-29	N/A	N/A
Pfam	UHGV-0337311_24	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0337311_24	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_25	phrog_6479	91.1	1.2e-26	N/A	unknown function
structural_annotation	UHGV-0337311_25	PF05037,PF17847,TIGR00638	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_26	phrog_1252	510.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_26	UniRef90_A0A5S9MN76	901.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0337311_26	1445858.A0A060ANI6_9CAUD	888.0	0	nucleic acid binding	N/A
structural_annotation	UHGV-0337311_26	PF00136,PF05037,MF_04100,NF004420,COG0417	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_27	K06191	68.1	1.8e-19	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-0337311_27	phrog_22	49.4	0.000000000000094	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_27	UniRef90_J9W8P9	65.1	0.0000000000035	Glutaredoxin-like protein NrdH	N/A
eggNOG-mapper	UHGV-0337311_27	1071400.LBUCD034_1508	65.1	0.000000000000587	Glutaredoxin	N/A
Pfam	UHGV-0337311_27	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
COG	UHGV-0337311_27	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-0337311_27	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_28	K15519	171.4	0	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	N/A
PHROG	UHGV-0337311_28	phrog_761	142.7	2.59941e-42	thymidylate kinase	other
UniRef90	UHGV-0337311_28	UniRef90_A0A249XZR7	408.0	0	Deoxyadenosine kinase / deoxyguanosine kinase	N/A
eggNOG-mapper	UHGV-0337311_28	388452.A6MAB5_9CAUD	229.0	0	Deoxynucleoside kinase	N/A
Pfam	UHGV-0337311_28	PF01712	N/A	N/A	Deoxynucleoside kinase	dNK
KOfam	UHGV-0337311_29	K03811	89.8	3.6e-26	pnuC; nicotinamide mononucleotide transporter	N/A
PHROG	UHGV-0337311_29	phrog_1880	210.7	0	PnuC-like nicotinamide mononucleotide transport	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0337311_29	UniRef90_A0A5R9BUU7	268.0	0	Nicotinamide mononucleotide transporter	N/A
eggNOG-mapper	UHGV-0337311_29	1225795.K4HZS6_9CAUD	265.0	0	nicotinamide riboside transmembrane transporter activity	N/A
Pfam	UHGV-0337311_29	PF04973	N/A	N/A	Nicotinamide mononucleotide transporter	NMN_transporter
NCBIFam	UHGV-0337311_29	TIGR01528.1	N/A	N/A	nicotinamide riboside transporter PnuC	N/A
structural_annotation	UHGV-0337311_29	PF04973,TIGR01528,COG3201	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_30	K01447	78.2	1.1e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0337311_30	phrog_1110	236.0	0	endolysin	lysis
UniRef90	UHGV-0337311_30	UniRef90_A0A377MS14	347.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0337311_30	1140001.I571_01766	357.0	0	Ami_2	N/A
Pfam	UHGV-0337311_30	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0337311_30	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0337311_30	PF01835,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_31	phrog_10091	66.3	5.3e-19	holin	lysis
UniRef90	UHGV-0337311_31	UniRef90_A8SKQ7	87.4	1.3e-20	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0337311_31	411465.PEPMIC_00750	87.4	2.18e-21	Bacteriophage holin	N/A
Pfam	UHGV-0337311_31	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0337311_31	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0337311_31	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337311_31	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_32	phrog_4105	80.6	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0337311_32	1121105.ATXL01000027_gene760	93.6	9.4e-23	N/A	N/A
PHROG	UHGV-0337311_33	phrog_9884	838.1	0	N/A	unknown function
UniRef90	UHGV-0337311_33	UniRef90_UPI000F4FE391	980.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0337311_33	768486.EHR_09635	870.0	0	N/A	N/A
Pfam	UHGV-0337311_33	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
PHROG	UHGV-0337311_34	phrog_1067	379.6	0	minor head protein	head and packaging
UniRef90	UHGV-0337311_34	UniRef90_A0A5N0YK74	1055.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0337311_34	565664.EFXG_01765	710.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0337311_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0337311_34	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0337311_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0337311_34	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0337311_35	phrog_33	60.3	4.9e-17	distal tail protein Dit	tail
UniRef90	UHGV-0337311_35	UniRef90_I6SDW0	302.0	0	Gp13 protein	N/A
eggNOG-mapper	UHGV-0337311_35	565664.EFXG_01766	302.0	0	phage tail	N/A
Pfam	UHGV-0337311_35	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0337311_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0337311_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_36	phrog_58	195.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0337311_36	UniRef90_A0A828ZZU7	434.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0337311_36	226185.EF_0348	255.0	0	Phage tail tape measure protein	N/A
COG	UHGV-0337311_36	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0337311_36	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_37	phrog_5802	68.5	7.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0337311_37	565664.EFXG_01769	76.6	4.22e-16	N/A	N/A
UniRef90	UHGV-0337311_39	UniRef90_UPI0010F78F52	178.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0337311_39	768486.EHR_09605	174.0	0	N/A	N/A
structural_annotation	UHGV-0337311_39	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_40	phrog_5509	59.4	6e-17	neck protein	connector
eggNOG-mapper	UHGV-0337311_40	1158607.UAU_01036	52.4	0.00000139	N/A	N/A
NCBIFam	UHGV-0337311_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0337311_40	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_41	phrog_5910	79.8	3.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0337311_41	565664.EFXG_01772	69.7	0.000000000000252	N/A	N/A
PHROG	UHGV-0337311_42	phrog_5635	59.0	9.3e-17	head-tail adaptor	connector
PHROG	UHGV-0337311_43	phrog_749	46.0	0.00000000000073	N/A	unknown function
PHROG	UHGV-0337311_44	phrog_10	131.2	1.1e-38	major head protein	head and packaging
UniRef90	UHGV-0337311_44	UniRef90_UPI001A8F5724	268.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0337311_44	1139219.I569_00232	266.0	0	Phage capsid family	N/A
Pfam	UHGV-0337311_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0337311_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0337311_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0337311_44	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_45	K01358	114.1	1.8e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0337311_45	phrog_94	153.9	1.4013e-45	head maturation protease	head and packaging
UniRef90	UHGV-0337311_45	UniRef90_A0A7V6Y6F7	123.0	6.2e-31	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0337311_45	1158607.UAU_01031	112.0	1.05e-27	Clp protease	N/A
Pfam	UHGV-0337311_45	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0337311_45	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0337311_45	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_46	phrog_12	70.7	1.5e-20	portal protein	head and packaging
UniRef90	UHGV-0337311_46	UniRef90_UPI0011B5ADC1	183.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0337311_46	1139219.I569_00230	144.0	4.58e-36	Phage portal protein	N/A
Pfam	UHGV-0337311_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0337311_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0337311_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_47	phrog_9	237.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0337311_47	UniRef90_W7LAN8	375.0	0	Putative phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0337311_47	1307436.PBF_22058	375.0	0	Terminase	N/A
Pfam	UHGV-0337311_47	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0337311_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0337311_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0337311_47	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0337311_48	phrog_5110	47.2	0.00000000000033	terminase small subunit	head and packaging
UniRef90	UHGV-0337311_48	UniRef90_W0FM64	51.2	0.00000523	Putative terminase small subunit	N/A
Pfam	UHGV-0337311_48	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0337311_49	phrog_5942	40.3	0.000000000051	N/A	unknown function
PHROG	UHGV-0337311_50	phrog_59	166.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_50	UniRef90_A0A8D6UFF5	181.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0337311_50	1416012.V5UQG0_9CAUD	172.0	0	HNH endonuclease	N/A
PADLOC	UHGV-0337311_50	HEase_00016	119.7	1.2e-35	homing endonuclease	RM
Pfam	UHGV-0337311_50	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0337311_50	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0337311_50	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0337311_51	K07451	49.5	0.000000000000087	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0337311_51	phrog_119	82.0	7.8e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337311_51	UniRef90_A0A133CKZ7	88.6	4.85e-20	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0337311_51	768486.EHR_09545	91.3	7.16e-22	HNH nucleases	N/A
Pfam	UHGV-0337311_51	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0337311_51	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A