UHGV-0337506 (vOTU-005652)

Viral Genome: UHGV-0337506

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0337506
vOTU ID	vOTU-005652
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR8133869_141_5842_round1256~769830
Associated BioSample	SAMEA4813966
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9722
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.86
Jumbo phage	No

Genome content
Genome length (bp)	35,627
GC content	56.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	564.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0337506_2	UniRef90_A0A372V3V8	90.1	1.71e-22	XRE family transcriptional regulator	N/A
Pfam	UHGV-0337506_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0337506_2	PF10078,NF040507,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_3	phrog_8	60.7	3.2e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0337506_3	UniRef90_A0A372V3Y4	96.3	1.55e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0337506_3	411483.FAEPRAA2165_00756	96.7	2.12e-23	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0337506_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0337506_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0337506_3	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_4	phrog_87	43.7	0.0000000000035	metallo-protease	other
UniRef90	UHGV-0337506_4	UniRef90_A0A329UQ57	209.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0337506_4	1007096.BAGW01000011_gene2354	74.7	0.00000000000000412	IrrE N-terminal-like domain	N/A
COG	UHGV-0337506_4	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0337506_4	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0337506_5	K07451	55.9	4.7e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0337506_5	phrog_589	57.1	3.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337506_5	UniRef90_A0A7M2RF22	417.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0337506_5	386415.NT01CX_1757	351.0	0	HNH endonuclease	N/A
Pfam	UHGV-0337506_5	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0337506_5	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0337506_5	PF01844,NF040563,COG1403	N/A	N/A	N/A	N/A
KOfam	UHGV-0337506_6	K14059	182.0	0	int; integrase	N/A
PHROG	UHGV-0337506_6	phrog_1	189.8	0	integrase	integration and excision
UniRef90	UHGV-0337506_6	UniRef90_A0A367GI93	309.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0337506_6	1507.HMPREF0262_00307	196.0	0	Phage integrase family	N/A
Pfam	UHGV-0337506_6	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0337506_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0337506_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0337506_6	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_7	phrog_1129	63.6	2.4e-18	holin	lysis
UniRef90	UHGV-0337506_7	UniRef90_A0A367FT42	171.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0337506_7	693746.OBV_13280	112.0	1.76e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0337506_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0337506_7	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_8	phrog_1863	80.6	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0337506_8	693746.OBV_18260	113.0	7.8e-32	N/A	N/A
KOfam	UHGV-0337506_9	K07273	182.5	0	acm; lysozyme	N/A
PHROG	UHGV-0337506_9	phrog_291	153.4	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0337506_9	UniRef90_A0A367G061	527.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0337506_9	411471.SUBVAR_06927	318.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0337506_9	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0337506_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0337506_9	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0337506_9	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_10	phrog_24267	58.2	1.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0337506_10	508419.F8J176_9CAUD	115.0	1.28e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0337506_10	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0337506_10	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
PHROG	UHGV-0337506_11	phrog_19111	50.0	3.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0337506_11	756499.Desde_3162	108.0	9.2e-24	nuclear chromosome segregation	N/A
COG	UHGV-0337506_11	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0337506_13	phrog_13589	184.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0337506_13	742733.HMPREF9469_05009	229.0	0	N/A	N/A
PHROG	UHGV-0337506_14	phrog_31538	45.2	0.0000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0337506_14	428125.CLOLEP_01433	59.7	0.000000000202	N/A	N/A
structural_annotation	UHGV-0337506_15	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_17	phrog_18444	80.6	1.2e-23	N/A	unknown function
UniRef90	UHGV-0337506_17	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0337506_17	1294142.CINTURNW_1707	60.8	0.0000000000104	N/A	N/A
PHROG	UHGV-0337506_18	phrog_18190	98.0	9.6e-33	N/A	unknown function
eggNOG-mapper	UHGV-0337506_18	411471.SUBVAR_06932	303.0	0	N/A	N/A
structural_annotation	UHGV-0337506_18	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_19	phrog_1194	42.2	0.000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0337506_19	411471.SUBVAR_06933	101.0	4.72e-26	N/A	N/A
structural_annotation	UHGV-0337506_19	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_20	phrog_6900	259.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0337506_20	UniRef90_UPI001CC012E9	295.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0337506_20	1121864.OMO_02161	328.0	0	tape measure	N/A
COG	UHGV-0337506_20	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0337506_20	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_21	phrog_1633	139.3	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0337506_21	UniRef90_UPI001939D555	112.0	1.64e-29	N/A	N/A
eggNOG-mapper	UHGV-0337506_21	883110.HMPREF9260_00651	107.0	2.37e-28	N/A	N/A
Pfam	UHGV-0337506_21	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0337506_21	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_22	phrog_1526	67.5	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0337506_22	879308.HMPREF9130_1240	57.4	0.00000000126	N/A	N/A
PHROG	UHGV-0337506_23	phrog_117	181.0	0	major tail protein	tail
UniRef90	UHGV-0337506_23	UniRef90_A0A1Y4TGT6	270.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0337506_23	1121864.OMO_02158	241.0	0	domain, Protein	N/A
COG	UHGV-0337506_23	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337506_23	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_24	phrog_123	70.8	2.1e-20	tail terminator	connector
UniRef90	UHGV-0337506_24	UniRef90_A0A139NAV0	117.0	6.14e-32	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0337506_24	1280698.AUJS01000007_gene1043	122.0	1.54e-34	N/A	N/A
structural_annotation	UHGV-0337506_24	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_25	phrog_387	68.6	8e-20	neck protein	connector
UniRef90	UHGV-0337506_25	UniRef90_A0A380KNT4	75.1	3.76e-16	N/A	N/A
eggNOG-mapper	UHGV-0337506_25	1121864.OMO_02156	77.8	5.29e-18	N/A	N/A
PHROG	UHGV-0337506_26	phrog_501	71.6	1.2e-20	head closure Hc1	connector
eggNOG-mapper	UHGV-0337506_26	748224.HMPREF9436_00693	170.0	0	N/A	N/A
structural_annotation	UHGV-0337506_26	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_27	phrog_137	56.5	3.8e-16	head-tail adaptor Ad1	connector
UniRef90	UHGV-0337506_27	UniRef90_E2ZGA8	164.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0337506_27	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_29	phrog_10	139.5	3.00004e-41	major head protein	head and packaging
UniRef90	UHGV-0337506_29	UniRef90_A0A1Y4TJU9	513.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0337506_29	748224.HMPREF9436_00690	445.0	0	Phage capsid family	N/A
Pfam	UHGV-0337506_29	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0337506_29	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0337506_29	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0337506_29	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_30	phrog_194	83.5	3.2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0337506_30	UniRef90_D4K444	154.0	1.82169e-44	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0337506_30	748224.HMPREF9436_03336	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0337506_30	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0337506_30	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_31	phrog_1374	63.1	3.2e-18	N/A	unknown function
UniRef90	UHGV-0337506_31	UniRef90_A0A8F5MGK2	67.0	0.000000000000193	Membrane protein	N/A
eggNOG-mapper	UHGV-0337506_31	1519439.JPJG01000059_gene1913	65.9	0.000000000000116	N/A	N/A
structural_annotation	UHGV-0337506_31	TIGR04438	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_33	phrog_193	123.9	1.8e-36	head maturation protease	head and packaging
UniRef90	UHGV-0337506_33	UniRef90_A0A6N8H118	365.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0337506_33	748224.HMPREF9436_01469	394.0	0	N/A	N/A
Pfam	UHGV-0337506_33	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0337506_33	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
structural_annotation	UHGV-0337506_33	PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_34	phrog_104	221.8	0	portal protein	head and packaging
UniRef90	UHGV-0337506_34	UniRef90_A0A3E2U200	775.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0337506_34	748224.HMPREF9436_01468	754.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0337506_34	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0337506_34	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_35	phrog_9	137.1	1.50001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0337506_35	UniRef90_UPI001D0087E2	455.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0337506_35	1410630.JNKP01000001_gene1822	627.0	0	phage terminase, large subunit	N/A
COG	UHGV-0337506_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0337506_35	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_36	phrog_1066	57.5	2.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0337506_36	445975.COLSTE_02166	73.6	0.00000000000000879	N/A	N/A
AcrCatalog	UHGV-0337506_36	cluster_154855	67.8	5.8e-17	NA	N/A
PHROG	UHGV-0337506_37	phrog_338	60.7	3.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337506_37	UniRef90_UPI0015F33F36	174.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0337506_37	748224.HMPREF9436_01465	175.0	0	N/A	N/A
eggNOG-mapper	UHGV-0337506_39	693746.OBV_18010	79.3	1.64e-16	N/A	N/A
structural_annotation	UHGV-0337506_39	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_42	phrog_15609	76.8	1.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0337506_42	641112.ACOK01000073_gene2872	68.9	0.000000000117	N/A	N/A
structural_annotation	UHGV-0337506_42	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_44	phrog_8470	280.8	0	N/A	unknown function
UniRef90	UHGV-0337506_44	UniRef90_UPI0019580896	193.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0337506_44	1226322.HMPREF1545_00100	205.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0337506_44	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0337506_44	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0337506_45	phrog_36399	54.5	0.0000000000000027	N/A	unknown function
PHROG	UHGV-0337506_46	phrog_3584	206.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337506_46	UniRef90_UPI001C02C5E0	160.0	3.08286e-44	N/A	N/A
eggNOG-mapper	UHGV-0337506_46	318464.IO99_13830	140.0	2.11e-37	N/A	N/A
structural_annotation	UHGV-0337506_46	PF01446	N/A	N/A	N/A	N/A