UHGV-0337879 (vOTU-137348)

Viral Genome: UHGV-0337879

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0337879
vOTU ID	vOTU-137348
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR7905338_141_80807_round1256~3892882
Associated BioSample	SAMN10133253
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.82 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.15
Jumbo phage	No

Genome content
Genome length (bp)	35,637
GC content	48.25%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	88%
Average CDS length (bps)	581.56
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.82)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0337879_1	K07273	94.0	2.2e-27	acm; lysozyme	N/A
PHROG	UHGV-0337879_1	phrog_291	62.3	9.3e-18	endolysin	lysis
UniRef90	UHGV-0337879_1	UniRef90_A0A564U0D3	226.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0337879_1	665956.HMPREF1032_02177	105.0	2.46e-25	hydrolase, family 25	N/A
Pfam	UHGV-0337879_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0337879_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0337879_1	NF007176	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_2	phrog_1382	50.2	0.000000000000021	N/A	unknown function
eggNOG-mapper	UHGV-0337879_2	33035.JPJF01000043_gene998	47.0	0.00000147	N/A	N/A
PHROG	UHGV-0337879_4	phrog_9534	51.5	0.000000000000015	head protein	head and packaging
eggNOG-mapper	UHGV-0337879_4	748224.HMPREF9436_00405	164.0	7.9874e-44	domain, Protein	N/A
COG	UHGV-0337879_4	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_5	phrog_18725	68.6	9.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0337879_5	1226322.HMPREF1545_00062	82.0	1.46e-17	N/A	N/A
PHROG	UHGV-0337879_6	phrog_13879	237.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0337879_6	1122919.KB905559_gene1344	164.0	1.86e-40	N/A	N/A
Pfam	UHGV-0337879_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0337879_6	PF14594,PF19789,PF03256,PF09134,NF033848,COG3500,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_7	phrog_1194	84.2	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0337879_7	665956.HMPREF1032_03629	56.6	0.0000000203	N/A	N/A
Pfam	UHGV-0337879_7	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0337879_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_8	phrog_1535	145.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0337879_8	UniRef90_A0A318EME6	159.0	1.21e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-0337879_8	1121866.AUGK01000003_gene1437	193.0	0	phage tail tape measure protein	N/A
COG	UHGV-0337879_8	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-0337879_9	1121333.JMLH01000047_gene1011	73.6	0.00000000000000862	N/A	N/A
UniRef90	UHGV-0337879_10	UniRef90_A0A847YX95	70.9	0.000000000000144	N/A	N/A
eggNOG-mapper	UHGV-0337879_10	1123263.AUKY01000015_gene1618	62.0	0.0000000000689	N/A	N/A
Pfam	UHGV-0337879_10	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0337879_10	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_11	phrog_158	46.2	0.00000000000083	major tail protein	tail
UniRef90	UHGV-0337879_11	UniRef90_UPI001D087591	117.0	4.36e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0337879_11	1449343.JQLQ01000002_gene1514	55.1	0.000000206	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0337879_11	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_12	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0337879_13	476272.RUMHYD_01963	53.9	0.00000137	N/A	N/A
eggNOG-mapper	UHGV-0337879_14	1298920.KI911353_gene2656	54.7	0.000000111	N/A	N/A
structural_annotation	UHGV-0337879_14	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0337879_15	UniRef90_R6N215	81.6	7.46e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0337879_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_16	phrog_29	179.5	0	major head protein	head and packaging
UniRef90	UHGV-0337879_16	UniRef90_A0A2Z4QBB4	370.0	0	Major capsid protein E	N/A
eggNOG-mapper	UHGV-0337879_16	1347368.HG964404_gene4993	263.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0337879_16	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0337879_16	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_19	phrog_64	154.3	0	portal protein	head and packaging
UniRef90	UHGV-0337879_19	UniRef90_A0A371ILT4	340.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0337879_19	1121866.AUGK01000003_gene1429	289.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0337879_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0337879_19	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_21	phrog_38	174.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0337879_21	UniRef90_UPI000419A6BC	431.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0337879_21	1121866.AUGK01000003_gene1428	431.0	0	chromosome segregation	N/A
COG	UHGV-0337879_21	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_21	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_23	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-0337879_24	K14060	138.8	4.80001e-41	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0337879_24	phrog_125	160.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337879_24	UniRef90_A0A3D0LYX8	215.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0337879_24	1410633.JHWR01000012_gene95	196.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0337879_24	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0337879_24	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0337879_24	PF00239,PF02796,MF_00489,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_27	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
KOfam	UHGV-0337879_28	K07741	89.8	7.9e-26	antB; anti-repressor protein	N/A
PHROG	UHGV-0337879_28	phrog_373	138.8	4.49999e-41	anti-repressor	transcription regulation
UniRef90	UHGV-0337879_28	UniRef90_UPI001C039A6C	167.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0337879_28	416870.llmg_0797	135.0	3.89e-36	ORF6C domain	N/A
Pfam	UHGV-0337879_28	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0337879_28	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0337879_28	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0337879_28	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_30	phrog_5319	41.7	0.0000000000082	outer membrane protein	other
eggNOG-mapper	UHGV-0337879_30	471855.Shel_11450	56.6	0.00000266	sh3 domain protein	N/A
COG	UHGV-0337879_30	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_30	PF03843,TIGR00752,COG3065	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_34	phrog_15551	88.9	3.6e-26	N/A	unknown function
UniRef90	UHGV-0337879_34	UniRef90_A0A6B4HKX4	75.1	5.29e-16	LPD11 domain-containing protein	N/A
eggNOG-mapper	UHGV-0337879_34	1002367.HMPREF0673_00164	73.6	3.15e-16	N/A	N/A
Pfam	UHGV-0337879_34	PF18824	N/A	N/A	Large polyvalent protein-associated domain 11	LPD11
structural_annotation	UHGV-0337879_34	PF18824	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_35	phrog_434	41.3	0.000000000024	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
COG	UHGV-0337879_35	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0337879_37	phrog_186	50.3	0.00000000000004	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337879_37	UniRef90_B0NH38	97.1	1.42e-20	Replication initiator protein A domain protein	N/A
eggNOG-mapper	UHGV-0337879_37	411468.CLOSCI_02792	97.1	2.39e-21	Replication initiator protein A (RepA) N-terminus	N/A
Pfam	UHGV-0337879_37	PF06970	N/A	N/A	Replication initiator protein A (RepA) N-terminus	RepA_N
COG	UHGV-0337879_37	COG1349	N/A	N/A	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	N/A
structural_annotation	UHGV-0337879_37	PF06970,MF_01177,NF040642,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_38	phrog_3886	235.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0337879_38	742735.HMPREF9467_00880	190.0	0	N/A	N/A
KOfam	UHGV-0337879_39	K03744	162.0	0	lemA; LemA protein	N/A
PHROG	UHGV-0337879_39	phrog_1383	122.9	1.9e-36	virion structural protein	head and packaging
UniRef90	UHGV-0337879_39	UniRef90_A0A6N9P3N6	211.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0337879_39	657322.FPR_23420	231.0	0	LemA family	N/A
Pfam	UHGV-0337879_39	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0337879_39	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0337879_39	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
KOfam	UHGV-0337879_40	K02314	213.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0337879_40	phrog_19	226.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0337879_40	UniRef90_A0A564SBR1	432.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0337879_40	1203606.HMPREF1526_01325	170.0	1.4013e-45	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0337879_40	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0337879_40	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0337879_40	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_41	phrog_678	41.2	0.000000000029	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0337879_41	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0337879_41	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0337879_41	PF19808	N/A	N/A	N/A	N/A
UniRef90	UHGV-0337879_42	UniRef90_UPI001AD832E5	95.1	3.86e-24	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0337879_42	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0337879_42	PF14354	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_45	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0337879_47	phrog_3136	124.6	4.3e-37	N/A	unknown function
UniRef90	UHGV-0337879_47	UniRef90_UPI001CBCD733	139.0	2.23e-38	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0337879_47	394503.Ccel_3165	70.5	0.000000000000379	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0337879_47	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0337879_47	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0337879_48	UniRef90_UPI0012DD33A2	246.0	0	restriction endonuclease subunit M	N/A
eggNOG-mapper	UHGV-0337879_48	1287488.HMPREF0671_07525	184.0	0	Eco57I restriction-modification methylase	N/A
PADLOC	UHGV-0337879_48	MTase_II_00176	147.1	0	Type II methyltransferase	RM
COG	UHGV-0337879_48	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0337879_49	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-0337879_50	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0337879_50	PF20331,COG5264	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0337879_53	PF03465,COG2331	N/A	N/A	N/A	N/A