UHGV-0339381 (vOTU-156208)

Viral Genome: UHGV-0339381

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0339381
vOTU ID	vOTU-156208
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR171500_141_180426_round13~9178803
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.74 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9758
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.92
Jumbo phage	No

Genome content
Genome length (bp)	31,340
GC content	37.13%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	93%
Average CDS length (bps)	582.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.74)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0339381_1	phrog_87	75.4	6.2e-22	metallo-protease	other
UniRef90	UHGV-0339381_1	UniRef90_A0A373INP4	187.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0339381_1	397288.C806_00132	180.0	0	Zn peptidase	N/A
Pfam	UHGV-0339381_1	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0339381_1	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0339381_1	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0339381_2	K22300	52.8	0.0000000000000083	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0339381_2	phrog_2967	43.1	0.0000000000071	transcriptional regulator	transcription regulation
UniRef90	UHGV-0339381_2	UniRef90_A0A3D5M3K0	91.3	2.08e-20	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0339381_2	642492.Clole_2801	83.2	4.33e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0339381_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0339381_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0339381_2	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339381_3	UniRef90_A0A533STR5	81.3	7.83e-19	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0339381_3	887929.HMP0721_1290	71.2	0.00000000000000164	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0339381_3	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_5	phrog_9607	98.9	5.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0339381_5	1304866.K413DRAFT_4639	82.4	2.81e-17	N/A	N/A
structural_annotation	UHGV-0339381_5	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_9	phrog_3584	246.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339381_9	UniRef90_A0A4P8IFK4	347.0	0	N/A	N/A
eggNOG-mapper	UHGV-0339381_9	742741.HMPREF9475_00404	297.0	0	N/A	N/A
structural_annotation	UHGV-0339381_9	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0339381_10	K03469	63.5	4.4e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0339381_10	phrog_531	60.9	2.2e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339381_10	UniRef90_A0A413YU26	284.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0339381_10	411902.CLOBOL_05701	125.0	1.11e-34	RNase H	N/A
Pfam	UHGV-0339381_10	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0339381_10	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0339381_10	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0339381_11	PF02179,NF011863	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_12	phrog_7566	91.7	5.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0339381_12	1235800.C819_00511	100.0	3.06e-24	N/A	N/A
KOfam	UHGV-0339381_14	K07319	90.9	7.8e-27	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0339381_14	phrog_16	228.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339381_14	UniRef90_A0A356C6C6	1493.0	0	DNA methylase N-4	N/A
eggNOG-mapper	UHGV-0339381_14	1298920.KI911353_gene2709	1393.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-0339381_14	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0339381_14	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0339381_14	PF01555,PF16203,PF04851,MF_01821,MF_00472,NF041790,NF008572,COG0553,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0339381_15	K00558	230.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0339381_15	phrog_116	265.9	0	DNA methyltransferase	other
UniRef90	UHGV-0339381_15	UniRef90_A0A174GZ53	930.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0339381_15	1235800.C819_02255	716.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0339381_15	MTase_II_00020	115.3	2e-36	Type II methyltransferase	RM
Pfam	UHGV-0339381_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0339381_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0339381_15	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0339381_19	1235790.C805_00035	65.1	0.0000000000616	N/A	N/A
PHROG	UHGV-0339381_20	phrog_2118	121.9	4.9e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339381_20	UniRef90_R5ZJF1	278.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0339381_20	610130.Closa_0730	124.0	5.38e-35	HNH endonuclease	N/A
Pfam	UHGV-0339381_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0339381_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0339381_23	phrog_36	60.2	4.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0339381_23	UniRef90_UPI00148AE65B	74.3	0.0000000000000373	N/A	N/A
eggNOG-mapper	UHGV-0339381_23	658655.HMPREF0988_02569	70.1	0.000000000000295	sigma factor activity	N/A
COG	UHGV-0339381_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0339381_23	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339381_26	UniRef90_A0A3R6K9T6	82.4	1.85e-19	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0339381_26	1042156.CXIVA_01520	70.1	0.00000000000000254	N/A	N/A
structural_annotation	UHGV-0339381_26	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339381_27	UniRef90_A0A292SSH8	88.6	6.11e-22	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0339381_27	478749.BRYFOR_07643	67.0	0.0000000000000374	N/A	N/A
PHROG	UHGV-0339381_28	phrog_1760	108.5	6.6e-32	anti-termination protein	transcription regulation
UniRef90	UHGV-0339381_28	UniRef90_A0A1C5VLT1	232.0	0	ORF6N domain	N/A
eggNOG-mapper	UHGV-0339381_28	476272.RUMHYD_02879	204.0	0	ORF6N domain	N/A
Pfam	UHGV-0339381_28	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-0339381_28	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0339381_29	K07451	47.9	0.00000000000024	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0339381_29	phrog_119	83.5	2.5e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0339381_29	UniRef90_U2R3I0	122.0	6.5e-35	HNH endonuclease domain protein	N/A
eggNOG-mapper	UHGV-0339381_29	1226322.HMPREF1545_00111	122.0	1.09e-35	HNH nucleases	N/A
Pfam	UHGV-0339381_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0339381_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0339381_29	TIGR02646	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_30	phrog_361	70.7	2.2e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0339381_30	UniRef90_A0A1C6H6I9	120.0	9.66e-33	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0339381_30	596315.HMPREF0634_0388	68.6	0.000000000000309	Phage terminase, small subunit	N/A
Pfam	UHGV-0339381_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0339381_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_31	phrog_9	304.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0339381_31	UniRef90_A0A0D8IV16	964.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0339381_31	1226322.HMPREF1545_00113	838.0	0	Phage Terminase	N/A
Pfam	UHGV-0339381_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0339381_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0339381_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0339381_31	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_32	phrog_12	185.7	0	portal protein	head and packaging
UniRef90	UHGV-0339381_32	UniRef90_A0A358PSB3	481.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0339381_32	1121423.JONT01000042_gene1421	449.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0339381_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0339381_32	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0339381_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0339381_32	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0339381_33	K06904	151.8	5.60519e-45	N/A	N/A
PHROG	UHGV-0339381_33	phrog_80	178.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0339381_33	UniRef90_A0A358PQU8	283.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0339381_33	398512.JQKC01000009_gene450	277.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0339381_33	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0339381_33	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0339381_33	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0339381_33	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_34	phrog_10	185.0	0	major head protein	head and packaging
UniRef90	UHGV-0339381_34	UniRef90_R9N389	483.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0339381_34	1235798.C817_04585	483.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0339381_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0339381_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0339381_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0339381_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_35	phrog_2550	66.6	2.1e-19	N/A	unknown function
UniRef90	UHGV-0339381_35	UniRef90_UPI001E35E63D	57.0	0.0000000131	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0339381_35	1226322.HMPREF1545_00117	76.6	4.73e-17	N/A	N/A
structural_annotation	UHGV-0339381_35	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_36	phrog_1951	85.4	4.3e-25	head-tail adaptor	connector
UniRef90	UHGV-0339381_36	UniRef90_A0A2T0F5S3	68.6	0.000000000000539	Phage head-tail adapter protein	N/A
NCBIFam	UHGV-0339381_36	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0339381_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_37	phrog_5	53.8	0.0000000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-0339381_37	UniRef90_UPI0019588270	102.0	1.82e-25	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0339381_37	665956.HMPREF1032_02261	98.2	1.02e-24	N/A	N/A
Pfam	UHGV-0339381_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0339381_37	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_38	phrog_78	52.0	0.000000000000015	tail terminator	connector
UniRef90	UHGV-0339381_38	UniRef90_C2UED4	87.0	4.57e-20	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0339381_38	476272.RUMHYD_01476	97.8	3.88e-25	COG NOG18352 non supervised orthologous group	N/A
structural_annotation	UHGV-0339381_38	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_39	phrog_88	133.9	1e-39	major tail protein	tail
UniRef90	UHGV-0339381_39	UniRef90_A0A8E3N1Q1	194.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0339381_39	1469948.JPNB01000001_gene698	149.0	4.80645e-43	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0339381_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0339381_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_40	phrog_709	107.7	6.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0339381_40	610130.Closa_0750	129.0	1.04e-36	N/A	N/A
structural_annotation	UHGV-0339381_40	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_41	phrog_1272	267.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0339381_41	UniRef90_A0A1C6HQ77	462.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0339381_41	610130.Closa_0752	397.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0339381_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0339381_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0339381_41	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0339381_41	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339381_42	UniRef90_A0A1W1XS73	88.6	9.37e-18	Phage-related protein	N/A
eggNOG-mapper	UHGV-0339381_42	411459.RUMOBE_00925	86.3	1.34e-17	phage tail	N/A
COG	UHGV-0339381_42	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0339381_42	PF20753,PF19266,TIGR01633,COG4722	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0339381_43	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_44	phrog_18110	336.7	0	N/A	unknown function
UniRef90	UHGV-0339381_44	UniRef90_A0A8D9PGP3	572.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0339381_44	411459.RUMOBE_00923	410.0	0	N/A	N/A
Pfam	UHGV-0339381_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0339381_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0339381_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0339381_44	PF06605,PF18994,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0339381_45	phrog_2566	47.9	0.0000000000002	N/A	unknown function
PHROG	UHGV-0339381_48	phrog_1863	54.9	1.3e-16	N/A	unknown function
UniRef90	UHGV-0339381_48	UniRef90_UPI001D0865D2	83.2	3.17e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0339381_48	1226322.HMPREF1545_04027	83.6	2.94e-20	N/A	N/A
PHROG	UHGV-0339381_49	phrog_1129	76.1	3e-22	holin	lysis
UniRef90	UHGV-0339381_49	UniRef90_UPI000E5CE6BF	159.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0339381_49	411461.DORFOR_00721	100.0	7.96e-27	N/A	N/A
Pfam	UHGV-0339381_49	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0339381_49	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0339381_50	UniRef90_UPI001C10529E	47.4	0.00000202	transposase	N/A
eggNOG-mapper	UHGV-0339381_50	394503.Ccel_0207	53.9	0.0000000127	PFAM transposase IS3 IS911 family protein	N/A
COG	UHGV-0339381_50	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A