UHGV-0340799 (vOTU-091984)

Viral Genome: UHGV-0340799

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0340799
vOTU ID	vOTU-091984
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR10338793_141_193467_round8-12~3425321
Associated BioSample	SAMN13013060
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.976
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.9
Jumbo phage	No

Genome content
Genome length (bp)	24,513
GC content	29.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	25
CDS density	94%
Average CDS length (bps)	926.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0340799_1	phrog_83	93.0	3.6e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0340799_1	UniRef90_UPI0003D5A199	291.0	0	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0340799_1	1121342.AUCO01000002_gene887	137.0	2.09e-39	Phage terminase, small subunit	N/A
Pfam	UHGV-0340799_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0340799_1	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0340799_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0340799_2	phrog_9	320.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0340799_2	UniRef90_UPI0011061D03	1122.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0340799_2	1211817.CCAT010000053_gene2129	640.0	0	Phage Terminase	N/A
Pfam	UHGV-0340799_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0340799_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0340799_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0340799_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_3	phrog_12	98.6	5.3e-29	portal protein	head and packaging
UniRef90	UHGV-0340799_3	UniRef90_UPI00148519DF	745.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0340799_3	349161.Dred_2606	249.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0340799_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0340799_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0340799_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0340799_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0340799_4	K01358	152.4	4.2039e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0340799_4	phrog_94	231.7	0	head maturation protease	head and packaging
UniRef90	UHGV-0340799_4	UniRef90_UPI00110724D9	421.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0340799_4	1232452.BAIB02000007_gene1626	236.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0340799_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0340799_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0340799_4	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_5	phrog_10	90.1	2.6e-26	major head protein	head and packaging
UniRef90	UHGV-0340799_5	UniRef90_UPI001107332E	792.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0340799_5	349161.Dred_2604	311.0	0	Phage capsid family	N/A
Pfam	UHGV-0340799_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0340799_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0340799_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0340799_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_6	phrog_749	59.3	6.7e-17	N/A	unknown function
UniRef90	UHGV-0340799_6	UniRef90_A0A1I3QJG6	127.0	2.29e-36	Phage gp6-like head-tail connector protein	N/A
PHROG	UHGV-0340799_7	phrog_5635	57.3	3.2e-16	head-tail adaptor	connector
UniRef90	UHGV-0340799_7	UniRef90_UPI0011070497	222.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0340799_7	1220589.CD32_01710	64.7	0.00000000000877	N/A	N/A
NCBIFam	UHGV-0340799_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0340799_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0340799_8	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_9	phrog_5509	110.0	1.5e-32	neck protein	connector
eggNOG-mapper	UHGV-0340799_9	936140.AEOT01000014_gene1361	67.4	0.00000000000162	N/A	N/A
structural_annotation	UHGV-0340799_9	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0340799_10	UniRef90_A0A316S919	230.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0340799_10	1384484.AEQU_1175	156.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0340799_10	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0340799_11	1121866.AUGK01000006_gene886	62.4	0.0000000000701	N/A	N/A
KOfam	UHGV-0340799_12	K06240	62.9	9.2e-19	LAMA3_5; laminin, alpha 3/5	N/A
PHROG	UHGV-0340799_12	phrog_1272	310.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0340799_12	UniRef90_UPI0011074901	1252.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0340799_12	397290.C810_00429	227.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0340799_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0340799_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0340799_12	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_13	phrog_33	73.1	6.7e-21	distal tail protein Dit	tail
UniRef90	UHGV-0340799_13	UniRef90_A0A1C5VG03	211.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0340799_13	573061.Clocel_3532	153.0	2.70451e-43	tail component	N/A
COG	UHGV-0340799_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0340799_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0340799_14	phrog_7043	385.3	0	tail protein	tail
UniRef90	UHGV-0340799_14	UniRef90_UPI0011CA3AC4	1264.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0340799_14	1292035.H476_1004	462.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0340799_14	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0340799_14	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
NCBIFam	UHGV-0340799_14	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0340799_14	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0340799_14	PF14594,PF08239,PF19081,PF13229,TIGR01665,NF040678,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0340799_15	K06330	95.6	3.8e-28	cotH; spore coat protein H	N/A
PHROG	UHGV-0340799_15	phrog_9391	96.3	1.5e-28	N/A	unknown function
UniRef90	UHGV-0340799_15	UniRef90_A0A843FQH9	296.0	0	CotH kinase family protein	N/A
eggNOG-mapper	UHGV-0340799_15	1114972.AUAW01000009_gene2144	179.0	1.4013e-45	CotH kinase protein	N/A
Pfam	UHGV-0340799_15	PF08757	N/A	N/A	CotH kinase protein	CotH
Pfam	UHGV-0340799_15	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0340799_15	COG5337	N/A	N/A	Spore coat protein CotH	N/A
KOfam	UHGV-0340799_16	K00640	119.2	5.1e-35	cysE; serine O-acetyltransferase [EC:2.3.1.30]	N/A
PHROG	UHGV-0340799_16	phrog_2154	75.2	6.9e-22	N/A	unknown function
UniRef90	UHGV-0340799_16	UniRef90_A0A397S7V9	144.0	3.94998e-41	Transferase family hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0340799_16	1280689.AUJC01000001_gene2554	127.0	4.35e-35	Bacterial transferase hexapeptide (six repeats)	N/A
Pfam	UHGV-0340799_16	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
COG	UHGV-0340799_16	COG1045	N/A	N/A	Serine acetyltransferase	N/A
PHROG	UHGV-0340799_18	phrog_1193	70.0	2.7e-20	hemolysin	other
UniRef90	UHGV-0340799_18	UniRef90_UPI0018AB0AA6	128.0	3.3e-37	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0340799_18	445335.CBN_3060	50.8	0.000000258	Haemolysin XhlA	N/A
Pfam	UHGV-0340799_18	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
UniRef90	UHGV-0340799_19	UniRef90_UPI000983D253	61.2	0.0000000000611	phage holin	N/A
eggNOG-mapper	UHGV-0340799_19	272626.lin1702	49.7	0.000000474	Bacteriophage holin	N/A
Pfam	UHGV-0340799_19	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0340799_19	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0340799_20	K01448	133.6	1.7e-39	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0340799_20	phrog_435	119.8	3.1e-35	endolysin	lysis
UniRef90	UHGV-0340799_20	UniRef90_UPI001106ED5F	509.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0340799_20	445973.CLOBAR_01731	443.0	0	Ami_3	N/A
Pfam	UHGV-0340799_20	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0340799_20	PF19087	N/A	N/A	N/A	DUF5776
COG	UHGV-0340799_20	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0340799_20	PF01520,PF19087,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0340799_21	K04763	237.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0340799_21	phrog_1	165.8	0	integrase	integration and excision
UniRef90	UHGV-0340799_21	UniRef90_W1UDF0	430.0	0	Tyrosine recombinase XerC (Fragment)	N/A
eggNOG-mapper	UHGV-0340799_21	632245.CLP_2596	247.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0340799_21	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0340799_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0340799_21	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0340799_21	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0340799_25	UniRef90_R6FRL4	76.6	3.88e-17	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0340799_25	1280689.AUJC01000024_gene150	61.6	0.00000000000543	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0340799_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0340799_25	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A