UHGV-0345219 (vOTU-004220)

Viral Genome: UHGV-0345219

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0345219
vOTU ID	vOTU-004220
Representative Genome?	Yes
Source	mMGE
Original genome ID	ERR1190622_119_100611_round8-12~2866795
Associated BioSample	SAMN14271015
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.61
Jumbo phage	No

Genome content
Genome length (bp)	40,239
GC content	30.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	90%
Average CDS length (bps)	562.88
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0345219_1	K02238	62.8	4.4e-18	comEC; competence protein ComEC	N/A
PHROG	UHGV-0345219_1	phrog_7043	113.1	2e-33	tail protein	tail
UniRef90	UHGV-0345219_1	UniRef90_F8UBD1	106.0	1.14e-23	Predicted hydrolase	N/A
eggNOG-mapper	UHGV-0345219_1	673376.F2VHX8_9CAUD	103.0	1.91e-23	N/A	N/A
UniRef90	UHGV-0345219_2	UniRef90_A0A5H2QRS2	866.0	0	Endopeptidase	N/A
eggNOG-mapper	UHGV-0345219_2	573061.Clocel_3531	129.0	6.98e-28	Phage minor structural protein	N/A
COG	UHGV-0345219_2	COG4926	N/A	N/A	Phage-related protein	N/A
KOfam	UHGV-0345219_3	K01448	87.0	2.5e-25	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0345219_3	phrog_435	164.5	0	endolysin	lysis
UniRef90	UHGV-0345219_3	UniRef90_B6CXF7	430.0	0	Amidase-hydrolase	N/A
eggNOG-mapper	UHGV-0345219_3	411470.RUMGNA_02814	131.0	1.01e-34	Ami_3	N/A
Pfam	UHGV-0345219_3	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0345219_3	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0345219_3	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0345219_4	UniRef90_F8UBN4	157.0	0	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-0345219_4	457396.CSBG_00968	55.5	0.00000000266	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0345219_4	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0345219_4	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_5	phrog_1193	61.7	1e-17	hemolysin	other
UniRef90	UHGV-0345219_5	UniRef90_A0A5H2QSB7	160.0	0	Recombination related exonuclease	N/A
PHROG	UHGV-0345219_8	phrog_14211	115.4	4.8e-34	anti-repressor	transcription regulation
Pfam	UHGV-0345219_8	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0345219_8	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
PHROG	UHGV-0345219_9	phrog_19685	116.3	7.9e-35	N/A	unknown function
PHROG	UHGV-0345219_10	phrog_17736	182.9	0	N/A	unknown function
PHROG	UHGV-0345219_11	phrog_17096	142.2	6.50202e-43	N/A	unknown function
PHROG	UHGV-0345219_12	phrog_18689	200.1	0	N/A	unknown function
PHROG	UHGV-0345219_14	phrog_18552	81.6	5.2e-24	N/A	unknown function
PHROG	UHGV-0345219_15	phrog_130	155.4	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0345219_15	UniRef90_A0A5H2QSC2	276.0	0	DNA binding protein	N/A
eggNOG-mapper	UHGV-0345219_15	1408422.JHYF01000021_gene999	144.0	1.35e-39	Phage antirepressor protein	N/A
Pfam	UHGV-0345219_15	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0345219_15	COG3617	N/A	N/A	Prophage antirepressor	N/A
PHROG	UHGV-0345219_18	phrog_374	198.1	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_18	UniRef90_A0A0H3N242	175.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0345219_18	500635.MITSMUL_03105	167.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0345219_18	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
eggNOG-mapper	UHGV-0345219_19	476272.RUMHYD_01770	68.9	0.0000000000134	N/A	N/A
PHROG	UHGV-0345219_22	phrog_17454	185.1	0	N/A	unknown function
PHROG	UHGV-0345219_23	phrog_17879	406.0	0	N/A	unknown function
COG	UHGV-0345219_23	COG1528	N/A	N/A	Ferritin	N/A
structural_annotation	UHGV-0345219_23	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_24	phrog_19908	112.8	8.6e-34	N/A	unknown function
PHROG	UHGV-0345219_25	phrog_18368	167.9	0	N/A	unknown function
PHROG	UHGV-0345219_26	phrog_253	151.9	2.8026e-45	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_26	UniRef90_B6CXH7	282.0	0	Gp157	N/A
eggNOG-mapper	UHGV-0345219_26	315749.Bcer98_2962	109.0	2.89e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0345219_26	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0345219_26	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_27	phrog_2324	154.1	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_27	UniRef90_F8UBF0	211.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0345219_27	673376.F2VHU8_9CAUD	380.0	0	ERF superfamily	N/A
Pfam	UHGV-0345219_27	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0345219_27	PF04404,TIGR00607	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_28	phrog_3490	89.5	1.5e-28	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_28	UniRef90_A0A7X9SR93	90.5	6e-19	ERCC4-type nuclease	N/A
eggNOG-mapper	UHGV-0345219_28	1415774.U728_1113	89.0	3.71e-19	ERCC4 domain	N/A
structural_annotation	UHGV-0345219_28	PF02732,NF040956	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_29	phrog_16715	123.6	3.6e-37	N/A	unknown function
KOfam	UHGV-0345219_30	K03465	205.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0345219_30	phrog_85	157.8	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_30	UniRef90_F8UBQ4	368.0	0	Predicted alternative thymidylate synthase	N/A
eggNOG-mapper	UHGV-0345219_30	673376.F2VHV1_9CAUD	368.0	0	flavin adenine dinucleotide binding	N/A
Pfam	UHGV-0345219_30	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0345219_30	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
HAMAP	UHGV-0345219_30	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0345219_30	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
KOfam	UHGV-0345219_31	K03111	113.8	2.7e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0345219_31	phrog_44	115.0	8e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_31	UniRef90_F2VHV2	229.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0345219_31	673376.F2VHV2_9CAUD	229.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0345219_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0345219_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0345219_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0345219_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_32	phrog_27657	189.8	0	N/A	unknown function
PHROG	UHGV-0345219_33	phrog_5558	89.5	3.5e-26	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0345219_33	UniRef90_B6CXI4	219.0	0	XRE-like regulator	N/A
Pfam	UHGV-0345219_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0345219_34	phrog_18098	753.5	0	N/A	unknown function
UniRef90	UHGV-0345219_34	UniRef90_F8UBK6	642.0	0	CHC2 zinc finger protein	N/A
Pfam	UHGV-0345219_34	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0345219_34	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
UniRef90	UHGV-0345219_35	UniRef90_B6CXI7	219.0	0	Cytolysin	N/A
PHROG	UHGV-0345219_36	phrog_2245	104.4	9.1e-31	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0345219_36	UniRef90_A0A5H2QSD0	203.0	0	Putative nucleoside triphosphate pyrophosphohydrolase	N/A
eggNOG-mapper	UHGV-0345219_36	926561.KB900623_gene754	51.2	0.000000574	N/A	N/A
structural_annotation	UHGV-0345219_36	PF01503,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_37	phrog_18244	172.9	0	N/A	unknown function
PHROG	UHGV-0345219_38	phrog_31157	101.1	4.2e-30	N/A	unknown function
PHROG	UHGV-0345219_39	phrog_17705	319.9	0	N/A	unknown function
PHROG	UHGV-0345219_40	phrog_606	51.6	0.000000000000015	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-0345219_40	931276.Cspa_c57180	67.0	0.00000000000253	DNA-packaging protein gp3	N/A
Pfam	UHGV-0345219_40	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0345219_40	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_41	phrog_30251	555.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0345219_41	UniRef90_A0A8F1V777	507.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0345219_41	1522092.A0A090EUA8_9CAUD	491.0	0	Pfam:Terminase_6C	N/A
Pfam	UHGV-0345219_41	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0345219_41	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0345219_41	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
structural_annotation	UHGV-0345219_41	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_42	phrog_5839	111.6	5.9e-35	N/A	unknown function
UniRef90	UHGV-0345219_42	UniRef90_UPI001AEC6E80	71.6	0.00000000000922	N/A	N/A
eggNOG-mapper	UHGV-0345219_42	673376.F2VHW0_9CAUD	243.0	0	N/A	N/A
Pfam	UHGV-0345219_42	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0345219_43	phrog_64	299.9	0	portal protein	head and packaging
UniRef90	UHGV-0345219_43	UniRef90_F8UBG3	884.0	0	Phage portal protein SPP1	N/A
eggNOG-mapper	UHGV-0345219_43	673376.F2VHW1_9CAUD	879.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0345219_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0345219_43	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_44	phrog_115	160.4	0	minor head protein	head and packaging
UniRef90	UHGV-0345219_44	UniRef90_B6CXD5	557.0	0	Minor head protein	N/A
eggNOG-mapper	UHGV-0345219_44	1504822.CCNO01000013_gene286	136.0	2.01e-33	cell adhesion	N/A
Pfam	UHGV-0345219_44	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0345219_44	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0345219_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0345219_44	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
UniRef90	UHGV-0345219_45	UniRef90_A0A5H2QSD3	142.0	2.87967e-42	Putative tail component	N/A
Pfam	UHGV-0345219_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0345219_46	phrog_374	230.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_46	UniRef90_Q4ZBR0	198.0	0	ORF019	N/A
eggNOG-mapper	UHGV-0345219_46	673376.F2VHW3_9CAUD	442.0	0	sequence-specific DNA binding transcription factor activity	N/A
structural_annotation	UHGV-0345219_46	PF18337	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_47	phrog_22191	117.6	3.4e-35	N/A	unknown function
PHROG	UHGV-0345219_48	phrog_16552	89.8	2.2e-26	N/A	unknown function
PHROG	UHGV-0345219_49	phrog_16621	118.9	8.9e-36	N/A	unknown function
PHROG	UHGV-0345219_50	phrog_1313	255.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0345219_50	UniRef90_B6CXE0	846.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0345219_50	673376.F2VHW6_9CAUD	846.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0345219_50	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
structural_annotation	UHGV-0345219_50	PF05272,MF_04000,NF011296,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_51	phrog_194	64.4	2.4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0345219_51	UniRef90_A0A5H2QW52	350.0	0	Recombination related exonuclease	N/A
structural_annotation	UHGV-0345219_51	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_52	phrog_212	258.5	0	major head protein	head and packaging
UniRef90	UHGV-0345219_52	UniRef90_UPI001D0814F6	360.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0345219_52	552396.HMPREF0863_00277	352.0	0	N/A	N/A
structural_annotation	UHGV-0345219_52	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_53	phrog_23208	339.6	0	virion structural protein	head and packaging
UniRef90	UHGV-0345219_53	UniRef90_UPI0010F8C45F	209.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0345219_53	1444310.JANV01000162_gene1162	95.1	2.92e-17	Prophage endopeptidase tail	N/A
Pfam	UHGV-0345219_53	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0345219_53	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0345219_54	phrog_1236	140.5	8.09951e-42	head protein	head and packaging
PHROG	UHGV-0345219_55	phrog_17977	252.5	0	N/A	unknown function
UniRef90	UHGV-0345219_55	UniRef90_UPI00141211AB	94.0	1.29e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-0345219_55	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_56	phrog_17405	275.0	0	head protein	head and packaging
structural_annotation	UHGV-0345219_56	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_57	phrog_885	162.5	0	major tail protein	tail
UniRef90	UHGV-0345219_57	UniRef90_Q894J4	69.3	0.0000000000449	Conserved protein	N/A
eggNOG-mapper	UHGV-0345219_57	561177.ANHYDRO_01415	90.9	4.96e-20	N/A	N/A
structural_annotation	UHGV-0345219_57	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0345219_58	phrog_18646	252.7	0	N/A	unknown function
UniRef90	UHGV-0345219_58	UniRef90_B6CXF0	218.0	0	Peptidase-colicin	N/A
eggNOG-mapper	UHGV-0345219_58	768704.Desmer_4456	50.4	0.000002	N/A	N/A
PHROG	UHGV-0345219_59	phrog_9696	211.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0345219_59	UniRef90_F8UBC7	380.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0345219_59	1415774.U728_1244	183.0	0	tail tape measure protein	N/A
Pfam	UHGV-0345219_59	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0345219_59	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0345219_59	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0345219_60	phrog_15478	541.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0345219_60	UniRef90_F8UBI0	844.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0345219_60	1391647.AVSV01000022_gene2570	196.0	0	tail tape measure protein	N/A
Pfam	UHGV-0345219_60	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0345219_60	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0345219_60	COG5283	N/A	N/A	Phage-related tail protein	N/A
UniRef90	UHGV-0345219_61	UniRef90_A0A7X9B7S6	64.3	0.0000000126	ORF6N domain-containing protein	N/A
Pfam	UHGV-0345219_61	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0345219_61	PF04480	N/A	N/A	N/A	DUF559
PHROG	UHGV-0345219_62	phrog_463	142.1	3.20057e-42	anti-repressor	transcription regulation
UniRef90	UHGV-0345219_62	UniRef90_F8UBN0	246.0	0	Prophage antirepressor	N/A
Pfam	UHGV-0345219_62	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
PHROG	UHGV-0345219_63	phrog_33	63.7	4.7e-18	distal tail protein Dit	tail
UniRef90	UHGV-0345219_63	UniRef90_F8UBI2	450.0	0	Putative phage tail component	N/A
eggNOG-mapper	UHGV-0345219_63	999411.HMPREF1092_03310	90.9	2.33e-19	N/A	N/A
NCBIFam	UHGV-0345219_63	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0345219_63	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0345219_63	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0345219_64	K02238	60.8	1.4e-17	comEC; competence protein ComEC	N/A
PHROG	UHGV-0345219_64	phrog_7043	1081.1	0	tail protein	tail
UniRef90	UHGV-0345219_64	UniRef90_B6CXF5	894.0	0	Endopeptidase-endolysin	N/A
eggNOG-mapper	UHGV-0345219_64	1292035.H476_1004	412.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0345219_64	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0345219_64	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
NCBIFam	UHGV-0345219_64	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0345219_64	COG4926	N/A	N/A	Phage-related protein	N/A