UHGV-0346360 (vOTU-050903)

Viral Genome: UHGV-0346360

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0346360
vOTU ID	vOTU-050903
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR2240837_119_44107_round347~1141050
Associated BioSample	SAMEA4588102
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9743
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.19
Jumbo phage	No

Genome content
Genome length (bp)	43,819
GC content	57.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	93%
Average CDS length (bps)	688.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0346360_1	K07273	179.8	0	acm; lysozyme	N/A
PHROG	UHGV-0346360_1	phrog_291	154.5	0	endolysin	lysis
UniRef90	UHGV-0346360_1	UniRef90_A0A367G061	503.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0346360_1	411471.SUBVAR_06927	308.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0346360_1	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0346360_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0346360_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0346360_1	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_2	phrog_1863	73.7	1.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0346360_2	693746.OBV_18260	111.0	3.17e-31	N/A	N/A
PHROG	UHGV-0346360_3	phrog_1129	61.4	1.1e-17	holin	lysis
UniRef90	UHGV-0346360_3	UniRef90_A0A367FT42	165.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0346360_3	693746.OBV_13280	111.0	6.62e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0346360_3	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0346360_3	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_4	K14059	195.0	0	int; integrase	N/A
PHROG	UHGV-0346360_4	phrog_1	196.1	0	integrase	integration and excision
UniRef90	UHGV-0346360_4	UniRef90_A0A367GI93	730.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0346360_4	1507.HMPREF0262_00307	189.0	0	Phage integrase family	N/A
Pfam	UHGV-0346360_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0346360_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0346360_4	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0346360_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0346360_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0346360_5	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0346360_6	UniRef90_A0A367GID4	120.0	1.18e-34	HTH_17 domain-containing protein	N/A
Pfam	UHGV-0346360_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0346360_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
PHROG	UHGV-0346360_10	phrog_18562	42.8	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0346360_11	PF01157,MF_01354,NF002745,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_13	K07465	45.4	0.000000000001	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0346360_13	phrog_69	316.0	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_13	UniRef90_A0A367GI90	729.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346360_13	1408437.JNJN01000081_gene1518	316.0	0	N/A	N/A
Pfam	UHGV-0346360_13	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0346360_13	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0346360_13	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_14	phrog_112	159.3	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_14	UniRef90_A0A367GK15	356.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346360_14	888821.HMPREF9394_0989	144.0	2.67003e-41	N/A	N/A
Pfam	UHGV-0346360_14	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0346360_14	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_15	K02334	778.9	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0346360_15	phrog_17	369.1	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_15	UniRef90_A0A367GJN4	1310.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0346360_15	1408437.JNJN01000045_gene604	667.0	0	DNA polymerase	N/A
Pfam	UHGV-0346360_15	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0346360_15	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0346360_15	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0346360_17	760568.Desku_0919	90.9	6.16e-20	N/A	N/A
structural_annotation	UHGV-0346360_17	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_20	phrog_256	957.7	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_20	UniRef90_A0A367GI49	1647.0	0	Virulence-associated protein E	N/A
eggNOG-mapper	UHGV-0346360_20	1120971.AUCA01000043_gene1172	728.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0346360_20	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0346360_20	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0346360_20	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_21	phrog_93	47.5	0.00000000000022	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_21	UniRef90_UPI0018F1F23F	219.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0346360_21	394503.Ccel_3056	81.6	6.07e-19	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0346360_21	PF08774,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_22	K14440	117.7	3e-35	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0346360_22	phrog_62	366.1	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346360_22	UniRef90_A0A367GJS6	929.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0346360_22	1203606.HMPREF1526_00244	481.0	0	snf2 family	N/A
PADLOC	UHGV-0346360_22	ZorD1_00007	103.7	2.2e-30	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0346360_22	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
COG	UHGV-0346360_22	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0346360_22	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346360_24	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_25	phrog_8680	196.6	0	N/A	unknown function
UniRef90	UHGV-0346360_25	UniRef90_A0A6L5T7C3	159.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0346360_25	1229517.AMFD01000023_gene1324	155.0	2.10195e-44	N/A	N/A
Pfam	UHGV-0346360_25	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0346360_25	PF14386,NF041059	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_26	K23518	207.3	0	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	N/A
UniRef90	UHGV-0346360_26	UniRef90_A0A367GJM1	315.0	0	RNase III inhibitor	N/A
eggNOG-mapper	UHGV-0346360_26	395961.Cyan7425_0164	158.0	0	Appr-1-p processing domain	N/A
Pfam	UHGV-0346360_26	PF01661	N/A	N/A	Macro domain	Macro
COG	UHGV-0346360_26	COG2110	N/A	N/A	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	N/A
structural_annotation	UHGV-0346360_26	PF01661,MF_01205,NF001663,COG2110	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_29	K00571	124.8	9.2e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0346360_29	phrog_498	434.5	0	DNA methyltransferase	other
UniRef90	UHGV-0346360_29	UniRef90_A0A367GIB5	862.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0346360_29	1423758.BN55_01455	416.0	0	DNA methylase	N/A
PADLOC	UHGV-0346360_29	MTase_II_00015	266.7	0	Type II methyltransferase	RM
Pfam	UHGV-0346360_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0346360_29	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0346360_29	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0346360_29	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0346360_30	K06909	304.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0346360_30	phrog_3717	125.9	2.6e-37	terminase large subunit	head and packaging
UniRef90	UHGV-0346360_30	UniRef90_A0A367GIK4	905.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0346360_30	665956.HMPREF1032_02957	400.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0346360_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0346360_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0346360_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0346360_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_31	phrog_533	257.8	0	portal protein	head and packaging
UniRef90	UHGV-0346360_31	UniRef90_A0A3E2XD02	623.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0346360_31	1449050.JNLE01000003_gene3894	251.0	0	N/A	N/A
Pfam	UHGV-0346360_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0346360_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_32	phrog_581	282.4	0	minor head protein	head and packaging
UniRef90	UHGV-0346360_32	UniRef90_A0A1C6FYV4	257.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0346360_32	936375.HMPREF1152_1071	231.0	0	N/A	N/A
Pfam	UHGV-0346360_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0346360_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346360_32	PF06152	N/A	N/A	N/A	N/A
COG	UHGV-0346360_33	COG3058	N/A	N/A	Formate dehydrogenase maturation protein FdhE	N/A
KOfam	UHGV-0346360_34	K00682	51.0	0.000000000000021	GGCT; gamma-glutamylcyclotransferase [EC:4.3.2.9]	N/A
PHROG	UHGV-0346360_34	phrog_2520	95.9	3.7e-28	gamma-glutamyl cyclotransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0346360_34	UniRef90_A0A367GJL1	169.0	0	Gamma-glutamylcyclotransferase	N/A
eggNOG-mapper	UHGV-0346360_34	411473.RUMCAL_03421	136.0	8.1e-39	AIG2-like family	N/A
Pfam	UHGV-0346360_34	PF06094	N/A	N/A	Gamma-glutamyl cyclotransferase, AIG2-like	GGACT
COG	UHGV-0346360_34	COG2105	N/A	N/A	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	N/A
structural_annotation	UHGV-0346360_34	PF06094,COG2105	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_37	phrog_2443	213.5	0	amidoligase enzyme	other
UniRef90	UHGV-0346360_37	UniRef90_R6RDL0	280.0	0	Putative amidoligase enzyme	N/A
eggNOG-mapper	UHGV-0346360_37	457415.HMPREF1006_00457	278.0	0	N/A	N/A
AcrCatalog	UHGV-0346360_37	cluster_58247	79.0	1.69e-18	NA	N/A
Pfam	UHGV-0346360_37	PF12224	N/A	N/A	Putative amidoligase enzyme	Amidoligase_2
structural_annotation	UHGV-0346360_37	PF12224,MF_01609,NF010045,COG2170	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0346360_38	1160721.RBI_I00206	50.1	0.000000196	N/A	N/A
structural_annotation	UHGV-0346360_38	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_39	phrog_194	44.0	0.000000000004	head scaffolding protein	head and packaging
UniRef90	UHGV-0346360_39	UniRef90_UPI001C3A5E35	56.6	0.00000172	Phage scaffolding protein	N/A
structural_annotation	UHGV-0346360_39	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_40	phrog_247	202.2	0	major head protein	head and packaging
UniRef90	UHGV-0346360_40	UniRef90_A0A3N0ATH1	157.0	1.35996e-41	Coat protein	N/A
eggNOG-mapper	UHGV-0346360_40	33035.JPJF01000106_gene3132	269.0	0	N/A	N/A
structural_annotation	UHGV-0346360_40	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346360_42	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_43	phrog_556	83.4	2.3e-24	minor head protein	head and packaging
UniRef90	UHGV-0346360_43	UniRef90_UPI001958E7C1	95.5	1.1e-22	minor capsid protein	N/A
eggNOG-mapper	UHGV-0346360_43	883114.HMPREF9709_01190	67.0	0.00000000000135	Minor capsid protein	N/A
Pfam	UHGV-0346360_43	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0346360_43	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_44	phrog_3266	77.9	1.1e-22	tail completion	connector
eggNOG-mapper	UHGV-0346360_44	663278.Ethha_0492	60.1	0.00000000149	N/A	N/A
structural_annotation	UHGV-0346360_44	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_45	phrog_3099	153.0	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0346360_45	411471.SUBVAR_06936	260.0	0	N/A	N/A
structural_annotation	UHGV-0346360_45	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_46	phrog_11299	99.9	2.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0346360_46	665956.HMPREF1032_03059	112.0	6.84e-30	N/A	N/A
structural_annotation	UHGV-0346360_46	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_47	phrog_706	100.2	2.2e-29	N/A	unknown function
UniRef90	UHGV-0346360_47	UniRef90_UPI0013141117	232.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0346360_47	665956.HMPREF1032_03058	210.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0346360_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0346360_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_48	phrog_1535	207.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0346360_48	665956.HMPREF1032_03628	168.0	9.96e-40	domain protein	N/A
COG	UHGV-0346360_48	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_49	phrog_1194	56.6	4.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0346360_49	411471.SUBVAR_06933	197.0	0	N/A	N/A
structural_annotation	UHGV-0346360_49	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_50	phrog_18190	108.8	2.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-0346360_50	411471.SUBVAR_06932	305.0	0	N/A	N/A
structural_annotation	UHGV-0346360_50	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_51	phrog_18444	80.2	1.5e-23	N/A	unknown function
UniRef90	UHGV-0346360_51	UniRef90_UPI0011788049	53.5	0.0000000517	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0346360_51	1294142.CINTURNW_1707	59.3	0.0000000000421	N/A	N/A
structural_annotation	UHGV-0346360_53	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0346360_54	phrog_31538	47.1	0.00000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0346360_54	428125.CLOLEP_01433	57.0	0.00000000229	N/A	N/A
PHROG	UHGV-0346360_55	phrog_13589	182.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0346360_55	428125.CLOLEP_01434	232.0	0	N/A	N/A
PHROG	UHGV-0346360_57	phrog_19111	57.8	8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0346360_57	1232443.BAIA02000078_gene14	74.3	0.00000000000156	nuclear chromosome segregation	N/A
COG	UHGV-0346360_57	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0346360_58	phrog_24267	58.3	1.7e-16	N/A	unknown function
UniRef90	UHGV-0346360_58	UniRef90_A0A2H4JF11	70.1	0.000000000187	Putative structural protein	N/A
eggNOG-mapper	UHGV-0346360_58	508419.F8J176_9CAUD	114.0	5.36e-26	peptidoglycan catabolic process	N/A
Pfam	UHGV-0346360_58	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0346360_58	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2