UHGV-0346570 (vOTU-142917)

Viral Genome: UHGV-0346570

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0346570
vOTU ID	vOTU-142917
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR1166389_119_3150_round1256~3622087
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.68 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9744
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.28
Jumbo phage	No

Genome content
Genome length (bp)	31,445
GC content	31.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	92%
Average CDS length (bps)	703.24
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0346570_1	PF19849	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_2	phrog_2872	221.6	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346570_2	UniRef90_UPI000C080C89	407.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0346570_2	1345695.CLSA_c30180	323.0	0	AAA domain	N/A
Pfam	UHGV-0346570_2	PF13401	N/A	N/A	AAA domain	AAA_22
structural_annotation	UHGV-0346570_2	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0346570_3	1280692.AUJL01000009_gene2989	50.8	0.00000121	N/A	N/A
PHROG	UHGV-0346570_4	phrog_18107	170.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0346570_4	1415774.U728_1116	232.0	0	N/A	N/A
structural_annotation	UHGV-0346570_4	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_5	phrog_3490	173.6	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346570_5	UniRef90_UPI001177E286	416.0	0	ERCC4-type nuclease	N/A
eggNOG-mapper	UHGV-0346570_5	1415774.U728_1113	213.0	0	ERCC4 domain	N/A
Pfam	UHGV-0346570_5	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0346570_5	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_6	phrog_2245	73.4	3.2e-21	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0346570_6	UniRef90_A0A844JSD9	71.6	0.0000000000000206	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0346570_6	1499683.CCFF01000017_gene2593	84.7	2.09e-20	N/A	N/A
structural_annotation	UHGV-0346570_6	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
UniRef90	UHGV-0346570_7	UniRef90_UPI0012B81C84	298.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346570_7	931276.Cspa_c26710	153.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0346570_7	PF18892	N/A	N/A	N/A	DUF5651
structural_annotation	UHGV-0346570_7	PF18892	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_9	K02316	66.2	3.1e-24	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0346570_9	phrog_26824	1028.1	0	N/A	unknown function
UniRef90	UHGV-0346570_9	UniRef90_UPI000C07BF90	1591.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0346570_9	536233.CLO_0520	926.0	0	DNA primase	N/A
PADLOC	UHGV-0346570_9	drt-cluster192	47.3	2.6e-16	DRT	DRT
Pfam	UHGV-0346570_9	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0346570_9	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0346570_9	PF01807,PF06048,PF19898,MF_00974,NF005477,COG5519,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346570_10	NF009256	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_11	K00390	102.2	5.7e-30	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0346570_11	phrog_424	131.9	5.1e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0346570_11	UniRef90_UPI000C086034	496.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0346570_11	1196322.A370_02048	327.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0346570_11	BrxP_00001	86.8	3e-25	BrxP	BREX
Pfam	UHGV-0346570_11	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0346570_11	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0346570_11	PF01507,MF_00063,NF010367,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0346570_12	318464.IO99_05365	263.0	0	N/A	N/A
PHROG	UHGV-0346570_13	phrog_2044	100.5	7.7e-30	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346570_13	UniRef90_A6TRD4	87.4	4.61e-21	N/A	N/A
eggNOG-mapper	UHGV-0346570_13	1415774.U728_863	95.5	4.88e-25	N/A	N/A
structural_annotation	UHGV-0346570_13	MF_00337,NF010671,COG1722	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_14	phrog_1891	217.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346570_14	UniRef90_UPI000C07D9DE	385.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0346570_14	536233.CLO_1807	261.0	0	HNH endonuclease	N/A
Pfam	UHGV-0346570_14	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0346570_14	PF13392	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346570_15	PF20027	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_16	phrog_36	60.8	2.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0346570_16	UniRef90_UPI0015D4CDE9	265.0	0	N/A	N/A
eggNOG-mapper	UHGV-0346570_16	1345695.CLSA_c30010	145.0	1.41952e-42	sigma factor activity	N/A
NCBIFam	UHGV-0346570_16	TIGR01636.1	N/A	N/A	phage transcriptional regulator, RinA family	N/A
COG	UHGV-0346570_16	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0346570_16	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_17	K06223	236.0	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0346570_17	phrog_56	207.7	0	DNA methyltransferase	other
UniRef90	UHGV-0346570_17	UniRef90_A0A1I2NMT2	487.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0346570_17	1280692.AUJL01000025_gene2087	487.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0346570_17	MTase_II_00039	181.0	0	Type II methyltransferase	RM
Pfam	UHGV-0346570_17	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
NCBIFam	UHGV-0346570_17	TIGR00571.1	N/A	N/A	Dam family site-specific DNA-(adenine-N6)-methyltransferase	N/A
COG	UHGV-0346570_17	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0346570_17	PF02086,MF_00934,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_20	K07451	41.3	0.000000000025	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0346570_20	phrog_144	107.7	9.7e-32	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0346570_20	UniRef90_UPI0018ABE7FE	261.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0346570_20	1391647.AVSV01000039_gene1095	116.0	1.18e-31	HNH endonuclease	N/A
Pfam	UHGV-0346570_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0346570_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0346570_20	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_21	phrog_83	79.0	4.5e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0346570_21	UniRef90_UPI000C069733	367.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0346570_21	861450.HMPREF0080_02041	174.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0346570_21	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0346570_21	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0346570_21	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_22	phrog_9	380.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0346570_22	UniRef90_UPI001EE9B2EE	889.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0346570_22	649639.Bcell_2095	814.0	0	Terminase	N/A
Pfam	UHGV-0346570_22	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0346570_22	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0346570_22	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0346570_22	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_23	phrog_12	299.5	0	portal protein	head and packaging
UniRef90	UHGV-0346570_23	UniRef90_UPI000C07250A	793.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0346570_23	1391647.AVSV01000039_gene1098	605.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0346570_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0346570_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0346570_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0346570_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_24	K01358	140.2	1.99993e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0346570_24	phrog_94	229.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0346570_24	UniRef90_UPI000C08B373	504.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0346570_24	1567013.A0A0A7RTN2_9CAUD	276.0	0	Clp protease	N/A
Pfam	UHGV-0346570_24	PF00574	N/A	N/A	Clp protease	CLP_protease
structural_annotation	UHGV-0346570_24	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_25	phrog_10	242.3	0	major head protein	head and packaging
UniRef90	UHGV-0346570_25	UniRef90_UPI0018AB7CA3	742.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0346570_25	1391647.AVSV01000039_gene1100	426.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0346570_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0346570_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0346570_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0346570_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_26	phrog_10972	45.0	0.0000000000018	tail fiber protein	tail
Pfam	UHGV-0346570_26	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0346570_27	phrog_40	66.0	4.6e-19	head-tail adaptor Ad1	connector
UniRef90	UHGV-0346570_27	UniRef90_UPI000C07E9CD	179.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0346570_27	1286171.EAL2_c11070	108.0	1.27e-29	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0346570_27	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0346570_27	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0346570_27	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_28	phrog_25	70.8	1.9e-20	head closure Hc1	connector
UniRef90	UHGV-0346570_28	UniRef90_UPI000C070376	233.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0346570_28	1487921.DP68_11340	88.6	2.3e-21	head-tail adaptor	N/A
Pfam	UHGV-0346570_28	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0346570_28	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0346570_28	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0346570_28	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_29	phrog_5	51.0	0.00000000000004	tail completion or Neck1 protein	connector
UniRef90	UHGV-0346570_29	UniRef90_UPI00189F2141	224.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0346570_29	1443122.Z958_06000	55.5	0.0000000302	N/A	N/A
Pfam	UHGV-0346570_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0346570_29	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0346570_29	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_30	phrog_78	85.4	6.6e-25	tail terminator	connector
UniRef90	UHGV-0346570_30	UniRef90_UPI0018ABE5C4	232.0	0	prohead protease	N/A
eggNOG-mapper	UHGV-0346570_30	1443122.Z958_06010	86.7	2.32e-20	N/A	N/A
structural_annotation	UHGV-0346570_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_31	phrog_88	158.0	0	major tail protein	tail
UniRef90	UHGV-0346570_31	UniRef90_UPI0018ABA76B	548.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0346570_31	431943.CKL_4060	135.0	5.3e-35	N/A	N/A
Pfam	UHGV-0346570_31	PF13205	N/A	N/A	Bacterial Ig-like domain	Big_5
NCBIFam	UHGV-0346570_31	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0346570_31	PF04630,PF13205,TIGR01603,NF033814,COG2372,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0346570_33	K20283	47.7	0.000000000000027	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0346570_33	phrog_1533	589.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0346570_33	UniRef90_UPI001A9B1399	1150.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0346570_33	536232.CLM_2046	603.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0346570_33	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0346570_33	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0346570_33	COG1340	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0346570_33	PF10145,PF16789,TIGR01760,TIGR02473,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_34	phrog_33	55.4	0.0000000000000017	distal tail protein Dit	tail
UniRef90	UHGV-0346570_34	UniRef90_UPI000C067EA6	419.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0346570_34	1280689.AUJC01000011_gene1531	258.0	0	phage tail	N/A
Pfam	UHGV-0346570_34	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0346570_34	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0346570_34	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0346570_34	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_35	phrog_1067	348.8	0	minor head protein	head and packaging
UniRef90	UHGV-0346570_35	UniRef90_UPI0018A8EE88	1246.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0346570_35	1280689.AUJC01000011_gene1532	644.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0346570_35	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0346570_35	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0346570_35	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0346570_35	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0346570_36	phrog_6130	57.7	1.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0346570_36	86416.Clopa_2560	73.2	2.25e-16	N/A	N/A
PHROG	UHGV-0346570_37	phrog_16573	62.0	7.5e-18	N/A	unknown function
UniRef90	UHGV-0346570_37	UniRef90_UPI0018ABAA4F	380.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0346570_37	1280689.AUJC01000011_gene1533	279.0	0	N/A	N/A
Pfam	UHGV-0346570_37	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0346570_37	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0346570_38	K16628	52.7	0.0000000000000012	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0346570_38	phrog_5073	111.4	5.9e-33	tail fiber protein	tail
UniRef90	UHGV-0346570_38	UniRef90_UPI000DD0EB1E	219.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0346570_38	1280689.AUJC01000011_gene1534	208.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0346570_38	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0346570_38	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0346570_39	K03651	66.7	2.4e-19	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-0346570_39	phrog_7158	150.7	8.40779e-45	N/A	unknown function
UniRef90	UHGV-0346570_39	UniRef90_UPI0018A09C06	1060.0	0	metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0346570_39	862514.HMPREF0623_0302	115.0	2.12e-24	Calcineurin-like phosphoesterase	N/A
Pfam	UHGV-0346570_39	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
PHROG	UHGV-0346570_40	phrog_1193	64.2	1.7e-18	hemolysin	other
UniRef90	UHGV-0346570_40	UniRef90_UPI000C06A985	150.0	0	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0346570_40	318464.IO99_03750	122.0	7.27e-36	Haemolysin XhlA	N/A
Pfam	UHGV-0346570_40	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0346570_41	phrog_1129	93.0	1.6e-27	holin	lysis
UniRef90	UHGV-0346570_41	UniRef90_UPI000DD0B747	152.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0346570_41	1280692.AUJL01000004_gene827	99.4	3.02e-26	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0346570_41	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0346570_41	PF16079	N/A	N/A	N/A	N/A