UHGV-0351183 (vOTU-130444)

Viral Genome: UHGV-0351183

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0351183
vOTU ID	vOTU-130444
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR7495928_141_148665_round1256~2549997
Associated BioSample	SAMN09605445
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.55 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.71
Jumbo phage	No

Genome content
Genome length (bp)	28,418
GC content	54.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	95%
Average CDS length (bps)	443.75
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0351183_1	phrog_4372	40.4	0.000000000013	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0351183_1	397290.C810_01419	85.1	0.00000000000000705	Transglycosylase SLT domain	N/A
COG	UHGV-0351183_1	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0351183_2	phrog_1194	76.9	2.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0351183_2	1232449.BAHV02000010_gene2724	105.0	1.16e-27	N/A	N/A
structural_annotation	UHGV-0351183_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_3	phrog_13879	190.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0351183_3	411902.CLOBOL_00124	293.0	0	N/A	N/A
structural_annotation	UHGV-0351183_3	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0351183_4	756499.Desde_2424	62.8	0.00000000043	N/A	N/A
PHROG	UHGV-0351183_5	phrog_863	64.5	2.8e-18	tail fiber assembly	tail
Pfam	UHGV-0351183_5	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0351183_5	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0351183_5	PF12810,PF20944	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_7	phrog_18593	123.8	1.2e-36	N/A	unknown function
UniRef90	UHGV-0351183_7	UniRef90_A0A2Y9CAD1	172.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0351183_7	411460.RUMTOR_02099	143.0	9.21998e-41	N/A	N/A
Pfam	UHGV-0351183_7	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0351183_7	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_8	phrog_4105	72.8	4.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0351183_8	397288.C806_00056	85.9	2.18e-20	N/A	N/A
PHROG	UHGV-0351183_9	phrog_15594	91.4	6.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0351183_9	1118055.CAGU01000013_gene763	65.9	0.00000000000108	N/A	N/A
structural_annotation	UHGV-0351183_9	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_11	phrog_13589	164.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0351183_11	428125.CLOLEP_01434	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0351183_12	742733.HMPREF9469_05008	55.5	0.0000000793	N/A	N/A
KOfam	UHGV-0351183_14	K07273	166.7	0	acm; lysozyme	N/A
PHROG	UHGV-0351183_14	phrog_291	142.2	4.40008e-42	endolysin	lysis
UniRef90	UHGV-0351183_14	UniRef90_A0A1C6ACC3	162.0	1.82169e-44	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0351183_14	536232.CLM_0899	129.0	7.91e-33	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0351183_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0351183_14	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0351183_14	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_15	phrog_6918	57.2	2.5e-16	holin	lysis
UniRef90	UHGV-0351183_15	UniRef90_A0A845RBH7	53.9	0.000000499	Holin	N/A
eggNOG-mapper	UHGV-0351183_15	1226322.HMPREF1545_03575	58.2	0.00000000305	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0351183_15	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0351183_15	PF09682,TIGR01673	N/A	N/A	N/A	N/A
UniRef90	UHGV-0351183_16	UniRef90_A0A843IZ65	62.8	0.0000000000183	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0351183_16	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0351183_19	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0351183_20	1408324.JNJK01000028_gene1590	72.8	0.00000000000174	N/A	N/A
structural_annotation	UHGV-0351183_21	PF16734,PF01402	N/A	N/A	N/A	N/A
KOfam	UHGV-0351183_23	K14059	199.5	0	int; integrase	N/A
PHROG	UHGV-0351183_23	phrog_1	168.2	0	integrase	integration and excision
UniRef90	UHGV-0351183_23	UniRef90_UPI001EDEB0AD	220.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0351183_23	742738.HMPREF9460_01344	199.0	0	Phage integrase family	N/A
Pfam	UHGV-0351183_23	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0351183_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0351183_23	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0351183_23	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0351183_24	K18831	40.7	0.00000000004	higA; HTH-type transcriptional regulator / antitoxin HigA	N/A
Pfam	UHGV-0351183_24	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0351183_24	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0351183_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0351183_26	K07449	125.9	2.6e-37	K07449; similar to archaeal holliday junction resolvase and Mrr protein	N/A
PHROG	UHGV-0351183_26	phrog_17577	48.2	0.00000000000013	restriction endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_26	UniRef90_A0A2Z4QA31	136.0	1.68e-36	Restriction endonuclease	N/A
eggNOG-mapper	UHGV-0351183_26	1235790.C805_00010	128.0	1.96e-34	Restriction endonuclease	N/A
PADLOC	UHGV-0351183_26	ZorD1_00005	73.4	2.9e-21	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0351183_26	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0351183_26	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0351183_28	K22300	43.4	0.0000000000076	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0351183_28	phrog_8	41.6	0.000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0351183_28	UniRef90_A0A2Z5YXK7	60.8	0.00000000183	Transcriptional regulator	N/A
COG	UHGV-0351183_28	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0351183_28	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0351183_32	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
Pfam	UHGV-0351183_37	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-0351183_38	phrog_323	43.4	0.0000000000032	endonuclease	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0351183_38	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_40	phrog_474	103.1	4e-30	phosphofructokinase	other
UniRef90	UHGV-0351183_40	UniRef90_UPI001D0B8E43	86.3	1.49e-18	N/A	N/A
eggNOG-mapper	UHGV-0351183_40	428125.CLOLEP_01367	99.0	1.5e-24	N/A	N/A
Pfam	UHGV-0351183_40	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0351183_40	PF19905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0351183_41	COG3460	N/A	N/A	N/A	N/A
UniRef90	UHGV-0351183_45	UniRef90_A0A8D9PDK2	50.8	0.00000485	Zinc-ribbon containing domain	N/A
PHROG	UHGV-0351183_49	phrog_111	155.1	0	DNA methyltransferase	other
UniRef90	UHGV-0351183_49	UniRef90_UPI001B999604	189.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0351183_49	411468.CLOSCI_00567	184.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0351183_49	oMTase_00015	184.2	0	orphan methyltransferase	RM
Pfam	UHGV-0351183_49	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0351183_49	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0351183_49	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_52	phrog_774	58.1	2.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0351183_52	397290.C810_05225	70.5	0.0000000000000118	N/A	N/A
KOfam	UHGV-0351183_54	K10906	82.3	9.6e-28	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0351183_54	phrog_412	223.5	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_54	UniRef90_A0A1C6GFL6	244.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0351183_54	1454004.AW11_02382	191.0	0	N/A	N/A
Pfam	UHGV-0351183_54	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0351183_54	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0351183_54	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_56	phrog_561	150.8	9.80909e-45	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_56	UniRef90_A0A0F0CCI3	216.0	0	RecT family protein	N/A
eggNOG-mapper	UHGV-0351183_56	33035.JPJF01000071_gene4462	187.0	0	N/A	N/A
Pfam	UHGV-0351183_56	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-0351183_56	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-0351183_57	K03111	112.9	4.8e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0351183_57	phrog_44	115.1	7.3e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_57	UniRef90_A0A2U1BEJ1	131.0	2.25e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0351183_57	445972.ANACOL_00151	97.4	1.03e-23	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0351183_57	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0351183_57	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0351183_57	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0351183_57	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0351183_57	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_58	phrog_374	206.3	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_58	UniRef90_C9KJA8	184.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0351183_58	500635.MITSMUL_03105	184.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
AcrCatalog	UHGV-0351183_58	cluster_113756	53.5	0.000000000193	NA	N/A
COG	UHGV-0351183_58	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
PHROG	UHGV-0351183_59	phrog_3490	120.2	1.5e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_59	UniRef90_A0A1C6FNL5	159.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0351183_59	357809.Cphy_2986	146.0	1.07059e-42	N/A	N/A
Pfam	UHGV-0351183_59	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0351183_59	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0351183_60	K02316	76.6	3.8e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0351183_60	phrog_11992	82.6	7.4e-24	N/A	unknown function
UniRef90	UHGV-0351183_60	UniRef90_A0A845N2C1	87.8	4.95e-18	DNA primase	N/A
eggNOG-mapper	UHGV-0351183_60	718252.FP2_18240	85.5	6.27e-18	CHC2 zinc finger	N/A
PADLOC	UHGV-0351183_60	drt-cluster192	57.9	2.5e-16	DRT	DRT
Pfam	UHGV-0351183_60	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0351183_60	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0351183_60	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0351183_61	phrog_8841	54.2	0.0000000000000019	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0351183_61	UniRef90_UPI00128B90FA	85.9	2.09e-17	N/A	N/A
eggNOG-mapper	UHGV-0351183_61	742738.HMPREF9460_02495	99.8	3.4e-22	N/A	N/A
COG	UHGV-0351183_61	COG5519	N/A	N/A	N/A	N/A