UHGV-0353525 (vOTU-050979)

Viral Genome: UHGV-0353525

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0353525
vOTU ID	vOTU-050979
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR10479838_141_28090_round347~1407004
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.69
Jumbo phage	No

Genome content
Genome length (bp)	41,423
GC content	41.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	90%
Average CDS length (bps)	594.38
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0353525_1	phrog_581	245.2	0	minor head protein	head and packaging
UniRef90	UHGV-0353525_1	UniRef90_A0A373MXM0	449.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0353525_1	476272.RUMHYD_01761	568.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0353525_1	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0353525_1	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0353525_1	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_2	phrog_533	255.6	0	portal protein	head and packaging
UniRef90	UHGV-0353525_2	UniRef90_A0A173R9C0	738.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0353525_2	476272.RUMHYD_01758	805.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0353525_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_3	K06909	116.8	2.1e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0353525_3	phrog_10250	134.4	6.2e-40	N/A	unknown function
UniRef90	UHGV-0353525_3	UniRef90_A0A417Q599	668.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0353525_3	476272.RUMHYD_01756	732.0	0	N/A	N/A
Pfam	UHGV-0353525_3	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0353525_3	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0353525_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0353525_3	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_4	phrog_606	101.5	7.7e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0353525_4	UniRef90_UPI001F487344	192.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0353525_4	397290.C810_05185	178.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0353525_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0353525_4	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0353525_5	476272.RUMHYD_01751	93.2	1.71e-23	N/A	N/A
KOfam	UHGV-0353525_6	K04763	170.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0353525_6	phrog_1	142.4	4.30058e-42	integrase	integration and excision
UniRef90	UHGV-0353525_6	UniRef90_A0A1C6HP01	350.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0353525_6	411468.CLOSCI_00297	345.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0353525_6	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0353525_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0353525_6	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0353525_6	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_11	phrog_1583	100.4	1.6e-29	N/A	unknown function
UniRef90	UHGV-0353525_11	UniRef90_UPI001C0F26CA	256.0	0	N/A	N/A
eggNOG-mapper	UHGV-0353525_11	1304866.K413DRAFT_4671	253.0	0	N/A	N/A
Pfam	UHGV-0353525_11	PF03235	N/A	N/A	N/A	DUF262
COG	UHGV-0353525_11	COG1479	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0353525_11	PF03235,COG1479	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_14	phrog_37410	87.8	5.8e-26	N/A	unknown function
PHROG	UHGV-0353525_17	phrog_17690	79.9	2.9e-23	N/A	unknown function
UniRef90	UHGV-0353525_17	UniRef90_A0A6L5XWF4	62.8	0.00000000145	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0353525_17	33035.JPJF01000123_gene2433	68.6	0.00000000000159	N/A	N/A
structural_annotation	UHGV-0353525_18	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_19	K02315	162.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0353525_19	phrog_50	164.0	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0353525_19	UniRef90_UPI00156EFE80	448.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0353525_19	476272.RUMHYD_03359	241.0	0	DNA-dependent DNA replication	N/A
Pfam	UHGV-0353525_19	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0353525_19	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0353525_19	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_20	phrog_10469	104.5	4.4e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0353525_20	UniRef90_A0A174WT25	234.0	0	Replication initiator A domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_20	97138.C820_00775	167.0	0	DnaD domain protein	N/A
COG	UHGV-0353525_20	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0353525_20	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_21	K01160	51.1	0.000000000000036	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0353525_21	phrog_140	117.5	9.2e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0353525_21	UniRef90_UPI00157032DC	256.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0353525_21	545697.HMPREF0216_02819	119.0	2.55e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0353525_21	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0353525_21	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0353525_21	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_22	phrog_398	202.4	0	N/A	unknown function
UniRef90	UHGV-0353525_22	UniRef90_UPI00157064FA	399.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0353525_22	33035.JPJF01000122_gene2462	295.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0353525_22	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0353525_22	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_23	phrog_659	203.4	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0353525_23	UniRef90_UPI00191DCC2D	330.0	0	N/A	N/A
eggNOG-mapper	UHGV-0353525_23	1140001.I571_01714	195.0	0	N/A	N/A
Pfam	UHGV-0353525_23	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0353525_23	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_24	phrog_30234	78.3	3.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0353525_24	33035.JPJF01000135_gene5083	84.0	5.2e-21	N/A	N/A
structural_annotation	UHGV-0353525_25	PF11280	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_26	phrog_30860	96.7	1e-28	N/A	unknown function
UniRef90	UHGV-0353525_27	UniRef90_A0A415G6W5	66.2	0.00000000000496	Winged helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0353525_27	PF20063	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0353525_28	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_30	K22300	62.1	1.2e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0353525_30	phrog_2967	60.5	1.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0353525_30	UniRef90_A0A8B3BUM8	161.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0353525_30	411470.RUMGNA_02181	161.0	0	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0353525_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0353525_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0353525_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_32	phrog_2967	40.6	0.000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0353525_32	UniRef90_UPI00156DDBFF	110.0	1.01e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0353525_32	1280698.AUJS01000007_gene1001	88.6	1.21e-22	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0353525_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0353525_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_33	K07448	116.1	3.1e-34	mrr; restriction system protein	N/A
PHROG	UHGV-0353525_33	phrog_19856	54.0	0.0000000000000018	N/A	unknown function
UniRef90	UHGV-0353525_33	UniRef90_A0A413TTB3	208.0	0	Ftsk_gamma domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_33	1235790.C805_00010	160.0	5.56315e-43	Restriction endonuclease	N/A
PADLOC	UHGV-0353525_33	ZorD1_00005	62.7	3.3e-18	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0353525_33	PF09397	N/A	N/A	Ftsk gamma domain	FtsK_gamma
Pfam	UHGV-0353525_33	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0353525_33	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
KOfam	UHGV-0353525_34	K14059	176.1	0	int; integrase	N/A
PHROG	UHGV-0353525_34	phrog_1	187.9	0	integrase	integration and excision
UniRef90	UHGV-0353525_34	UniRef90_A0A2Z4UCR8	645.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_34	33035.JPJF01000091_gene89	447.0	0	Phage integrase family	N/A
Pfam	UHGV-0353525_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0353525_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0353525_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0353525_36	UniRef90_U2CXQ8	131.0	1.54e-38	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0353525_36	203119.Cthe_1750	52.4	0.0000000391	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0353525_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0353525_36	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_38	K14059	266.0	0	int; integrase	N/A
PHROG	UHGV-0353525_38	phrog_1	211.4	0	integrase	integration and excision
UniRef90	UHGV-0353525_38	UniRef90_UPI00164A4E4A	187.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0353525_38	1382358.JHVN01000005_gene3032	167.0	0	Phage integrase family	N/A
Pfam	UHGV-0353525_38	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0353525_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0353525_38	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0353525_38	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0353525_39	K07273	184.1	0	acm; lysozyme	N/A
PHROG	UHGV-0353525_39	phrog_291	168.3	0	endolysin	lysis
UniRef90	UHGV-0353525_39	UniRef90_S2YFN0	415.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_39	537007.BLAHAN_04972	315.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0353525_39	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0353525_39	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0353525_39	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0353525_39	PF01183,PF01476,PF08230,TIGR02899,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_40	phrog_443	53.2	0.0000000000000081	holin	lysis
UniRef90	UHGV-0353525_40	UniRef90_UPI001C0212A6	100.0	2.58e-26	holin	N/A
eggNOG-mapper	UHGV-0353525_40	742733.HMPREF9469_01797	84.7	7.09e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0353525_40	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0353525_40	PF16945	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0353525_42	931276.Cspa_c27110	50.8	0.0000000729	N/A	N/A
PHROG	UHGV-0353525_43	phrog_16164	518.0	0	N/A	unknown function
UniRef90	UHGV-0353525_43	UniRef90_R6RVF6	265.0	0	SGNH_hydro domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_43	476272.RUMHYD_00002	129.0	7.12e-28	N/A	N/A
structural_annotation	UHGV-0353525_43	PF10651,NF032891	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0353525_44	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0353525_44	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0353525_45	537007.BLAHAN_05250	119.0	6.06e-33	N/A	N/A
eggNOG-mapper	UHGV-0353525_47	33035.JPJF01000093_gene2239	67.0	0.000000000375	N/A	N/A
PHROG	UHGV-0353525_48	phrog_18444	49.4	0.000000000000066	N/A	unknown function
PHROG	UHGV-0353525_49	phrog_6616	568.9	0	tail protein	tail
UniRef90	UHGV-0353525_49	UniRef90_A0A173R8I5	530.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0353525_49	33035.JPJF01000043_gene1002	417.0	0	N/A	N/A
structural_annotation	UHGV-0353525_49	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_50	phrog_1194	53.9	0.0000000000000031	N/A	unknown function
structural_annotation	UHGV-0353525_50	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_51	phrog_1535	479.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0353525_51	UniRef90_A0A1C5N853	226.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0353525_51	411459.RUMOBE_01384	216.0	0	phage tail tape measure protein	N/A
COG	UHGV-0353525_51	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0353525_52	phrog_706	128.5	2.6e-38	N/A	unknown function
UniRef90	UHGV-0353525_52	UniRef90_UPI00156F9D1C	274.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0353525_52	411459.RUMOBE_01383	194.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0353525_52	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0353525_52	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_53	phrog_11299	118.4	4.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0353525_53	33035.JPJF01000106_gene3125	107.0	6.27e-28	N/A	N/A
structural_annotation	UHGV-0353525_53	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_54	phrog_3099	114.0	1.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0353525_54	476272.RUMHYD_01782	253.0	0	N/A	N/A
structural_annotation	UHGV-0353525_54	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_55	phrog_3266	91.3	7.7e-27	tail completion	connector
eggNOG-mapper	UHGV-0353525_55	476272.RUMHYD_01781	259.0	0	N/A	N/A
structural_annotation	UHGV-0353525_55	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_56	phrog_556	74.5	1.1e-21	minor head protein	head and packaging
UniRef90	UHGV-0353525_56	UniRef90_UPI0008B4CFF0	159.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0353525_56	476272.RUMHYD_01780	224.0	0	N/A	N/A
Pfam	UHGV-0353525_56	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0353525_56	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_57	phrog_3366	96.8	2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0353525_57	476272.RUMHYD_01779	207.0	0	N/A	N/A
structural_annotation	UHGV-0353525_57	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_59	phrog_1233	85.4	6.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0353525_59	357809.Cphy_2967	107.0	1.03e-28	N/A	N/A
PHROG	UHGV-0353525_60	phrog_541	81.0	1.1e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-0353525_60	476272.RUMHYD_01778	219.0	0	N/A	N/A
PHROG	UHGV-0353525_61	phrog_247	278.2	0	major head protein	head and packaging
UniRef90	UHGV-0353525_61	UniRef90_UPI00156F9026	715.0	0	phage coat protein	N/A
eggNOG-mapper	UHGV-0353525_61	536233.CLO_0886	403.0	0	N/A	N/A
COG	UHGV-0353525_61	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0353525_61	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0353525_62	phrog_194	78.6	1e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0353525_62	UniRef90_UPI001D14C9C8	211.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0353525_62	476272.RUMHYD_01775	171.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0353525_62	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0353525_62	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-0353525_63	UniRef90_A0A7X5ISJ0	62.0	0.0000000000648	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0353525_63	1235798.C817_04195	57.4	0.000000000652	Cysteine-rich KTR	N/A
Pfam	UHGV-0353525_63	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR