UHGV-0358234 (vOTU-171145)

Viral Genome: UHGV-0358234

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0358234
vOTU ID	vOTU-171145
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_1509_round1256~3761326
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.85 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.27
Jumbo phage	No

Genome content
Genome length (bp)	19,649
GC content	40.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	25
CDS density	94%
Average CDS length (bps)	737.04
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.85)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0358234_1	1216362.B437_09073	49.7	0.00000146	N/A	N/A
COG	UHGV-0358234_1	COG3410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358234_4	PF21291,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0358234_7	K01447	58.9	1.1e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0358234_7	phrog_20388	307.6	0	endolysin	lysis
UniRef90	UHGV-0358234_7	UniRef90_A0A374N1L8	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0358234_7	1203606.HMPREF1526_00253	313.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0358234_7	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0358234_7	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0358234_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0358234_7	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_8	phrog_881	79.9	1.9e-23	holin	lysis
UniRef90	UHGV-0358234_8	UniRef90_R7EEV6	101.0	7.71e-27	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0358234_8	742740.HMPREF9474_02251	103.0	1.27e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0358234_8	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0358234_8	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_9	phrog_1009	40.0	0.00000000006	N/A	unknown function
UniRef90	UHGV-0358234_9	UniRef90_A0A373XMY3	175.0	0	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0358234_9	742765.HMPREF9457_03364	84.7	2.33e-20	N/A	N/A
UniRef90	UHGV-0358234_11	UniRef90_A0A373XLZ6	275.0	0	N/A	N/A
structural_annotation	UHGV-0358234_11	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_12	phrog_1067	107.5	5.8e-32	minor head protein	head and packaging
UniRef90	UHGV-0358234_12	UniRef90_A0A348ZBV6	157.0	6.39006e-41	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0358234_12	1462527.CCDM010000003_gene3730	65.9	0.0000000119	gp58-like protein	N/A
Pfam	UHGV-0358234_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0358234_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0358234_12	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358234_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_13	phrog_33	72.5	1e-20	distal tail protein Dit	tail
UniRef90	UHGV-0358234_13	UniRef90_A0A1G5CPA2	131.0	1.31e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0358234_13	1444306.JFZC01000034_gene2623	86.7	1.72e-17	tail component	N/A
COG	UHGV-0358234_13	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0358234_13	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0358234_14	K20283	58.9	5e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0358234_14	phrog_5218	277.6	0	N/A	unknown function
UniRef90	UHGV-0358234_14	UniRef90_A0A412ULX0	1863.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0358234_14	588581.Cpap_1264	222.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0358234_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0358234_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0358234_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358234_15	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_16	phrog_88	71.4	1.3e-20	major tail protein	tail
UniRef90	UHGV-0358234_16	UniRef90_A0A1G5CNS8	150.0	4.1002e-42	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0358234_16	1321782.HMPREF1986_01362	66.6	0.0000000000754	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0358234_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0358234_16	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0358234_17	UniRef90_UPI000E5564A4	273.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0358234_17	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0358234_17	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0358234_18	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_19	phrog_19734	72.5	5.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0358234_19	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-0358234_19	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0358234_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_20	phrog_749	56.3	5e-16	N/A	unknown function
UniRef90	UHGV-0358234_20	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0358234_20	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-0358234_21	phrog_10	124.6	9.4e-37	major head protein	head and packaging
UniRef90	UHGV-0358234_21	UniRef90_A0A412ULW9	702.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0358234_21	1211817.CCAT010000053_gene2132	327.0	0	Phage capsid family	N/A
Pfam	UHGV-0358234_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0358234_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0358234_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0358234_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0358234_22	K01358	137.9	9.99995e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0358234_22	phrog_94	204.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0358234_22	UniRef90_A0A412ULU1	446.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0358234_22	86416.Clopa_0340	176.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0358234_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0358234_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0358234_22	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_23	phrog_12	100.8	1.1e-29	portal protein	head and packaging
UniRef90	UHGV-0358234_23	UniRef90_A0A412ULV9	726.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0358234_23	1415774.U728_1254	266.0	0	Phage portal protein	N/A
Pfam	UHGV-0358234_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0358234_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0358234_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0358234_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0358234_24	K00571	174.5	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0358234_24	phrog_498	103.2	3e-30	DNA methyltransferase	other
UniRef90	UHGV-0358234_24	UniRef90_A0A412UM21	399.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0358234_24	1226322.HMPREF1545_02860	160.0	0	N/A	N/A
PADLOC	UHGV-0358234_24	MTase_II_00157	142.2	4.30199e-43	Type II methyltransferase	RM
Pfam	UHGV-0358234_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0358234_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0358234_24	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0358234_25	phrog_9	170.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0358234_25	UniRef90_A0A412UM03	673.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0358234_25	86416.Clopa_0337	343.0	0	Phage Terminase	N/A
Pfam	UHGV-0358234_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0358234_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0358234_25	PF20441,MF_04147,TIGR01547,COG4626	N/A	N/A	N/A	N/A