UHGV-0359403 (vOTU-118816)

Viral Genome: UHGV-0359403

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0359403
vOTU ID	vOTU-118816
Representative Genome?	Yes
Source	mMGE
Original genome ID	k119_90780_round1256~3442749
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.98
Jumbo phage	No

Genome content
Genome length (bp)	35,944
GC content	51.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	91%
Average CDS length (bps)	520.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0359403_1	phrog_37549	50.6	0.000000000000014	virion structural protein	head and packaging
UniRef90	UHGV-0359403_1	UniRef90_A0A3D0W045	213.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_1	1195236.CTER_5103	97.1	1.73e-18	N/A	N/A
PHROG	UHGV-0359403_2	phrog_6900	233.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0359403_2	1123312.KB904569_gene357	258.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0359403_2	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0359403_2	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_4	phrog_18646	56.7	4.7e-16	N/A	unknown function
PHROG	UHGV-0359403_5	phrog_885	72.1	6.8e-21	major tail protein	tail
UniRef90	UHGV-0359403_5	UniRef90_A0A843J9F0	204.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_5	1504822.CCNO01000012_gene492	246.0	0	N/A	N/A
structural_annotation	UHGV-0359403_5	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359403_6	UniRef90_A0A415JI88	122.0	1.41e-33	N/A	N/A
structural_annotation	UHGV-0359403_6	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_7	phrog_17977	74.1	1.4e-21	N/A	unknown function
UniRef90	UHGV-0359403_7	UniRef90_UPI00141211AB	109.0	9.39e-29	head-tail adaptor protein	N/A
structural_annotation	UHGV-0359403_7	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_9	phrog_544	132.2	4.7e-39	major head protein	head and packaging
UniRef90	UHGV-0359403_9	UniRef90_A0A1C6B5R0	597.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_9	1232453.BAIF02000011_gene3359	365.0	0	N/A	N/A
Pfam	UHGV-0359403_9	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0359403_9	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_10	phrog_194	45.5	0.0000000000014	head scaffolding protein	head and packaging
UniRef90	UHGV-0359403_10	UniRef90_A0A6B9SU02	150.0	1.98003e-42	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-0359403_10	476272.RUMHYD_01775	59.7	0.0000000251	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0359403_10	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_11	phrog_5	80.4	3.3e-23	tail completion or Neck1 protein	connector
UniRef90	UHGV-0359403_11	UniRef90_UPI0018AA0B5A	190.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0359403_11	1443125.Z962_05620	99.4	5.45e-25	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0359403_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0359403_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0359403_11	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_12	phrog_595	122.5	4.2e-36	head maturation protease	head and packaging
UniRef90	UHGV-0359403_12	UniRef90_A0A3D3Y165	450.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_12	1111135.HMPREF1248_0663	213.0	0	cell adhesion	N/A
Pfam	UHGV-0359403_12	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0359403_12	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0359403_12	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359403_12	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_13	phrog_64	153.1	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0359403_13	UniRef90_UPI001AA0B7FF	495.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0359403_13	673376.F2VHW1_9CAUD	217.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0359403_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0359403_13	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0359403_14	K06909	117.8	1.1e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0359403_14	phrog_10250	146.7	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0359403_14	UniRef90_UPI0018A99FCF	609.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0359403_14	476272.RUMHYD_01756	445.0	0	N/A	N/A
Pfam	UHGV-0359403_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0359403_14	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0359403_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0359403_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0359403_14	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359403_15	UniRef90_UPI0018A8F249	187.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0359403_15	1226322.HMPREF1545_00042	117.0	6.82e-32	N/A	N/A
structural_annotation	UHGV-0359403_15	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_16	phrog_8680	226.9	0	N/A	unknown function
UniRef90	UHGV-0359403_16	UniRef90_A0A3R6D7I3	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-0359403_16	411470.RUMGNA_02208	239.0	0	N/A	N/A
Pfam	UHGV-0359403_16	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0359403_16	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_18	1226322.HMPREF1545_00044	75.5	0.00000000000000275	N/A	N/A
eggNOG-mapper	UHGV-0359403_19	742738.HMPREF9460_02503	93.2	2.37e-23	N/A	N/A
structural_annotation	UHGV-0359403_19	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0359403_20	K01520	148.8	3.92364e-44	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0359403_20	phrog_135	131.0	6.2e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359403_20	UniRef90_A0A3D3Y5Q7	235.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0359403_20	887929.HMP0721_1278	144.0	9.8231e-43	dUTPase	N/A
Pfam	UHGV-0359403_20	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0359403_20	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0359403_20	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0359403_20	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_22	phrog_1770	56.7	5.1e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0359403_22	536233.CLO_1822	154.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0359403_22	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359403_23	UniRef90_UPI0019D1E2CF	230.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0359403_23	742735.HMPREF9467_00909	172.0	0	N/A	N/A
structural_annotation	UHGV-0359403_23	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_24	phrog_599	40.0	0.000000000063	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
dbAPIS	UHGV-0359403_24	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0359403_27	phrog_38832	55.0	5.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0359403_27	1232443.BAIA02000078_gene48	55.8	0.000000293	N/A	N/A
Pfam	UHGV-0359403_27	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0359403_28	K00390	98.0	1.1e-28	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0359403_28	phrog_424	109.4	3.3e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0359403_28	UniRef90_UPI001D087498	400.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0359403_28	1408437.JNJN01000032_gene2312	318.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0359403_28	BrxP_00001	68.5	7e-21	BrxP	BREX
Pfam	UHGV-0359403_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0359403_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0359403_28	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_29	642492.Clole_0961	72.8	4.42e-16	N/A	N/A
structural_annotation	UHGV-0359403_29	PF12286	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_32	phrog_15768	93.2	3.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0359403_32	742740.HMPREF9474_03117	104.0	3.58e-24	N/A	N/A
structural_annotation	UHGV-0359403_32	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0359403_33	K03111	128.5	8.1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0359403_33	phrog_44	136.1	2.29999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359403_33	UniRef90_A0A2V2CEG7	181.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0359403_33	445972.ANACOL_00151	173.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0359403_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0359403_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0359403_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0359403_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0359403_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_35	phrog_7370	59.6	4.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359403_35	UniRef90_A0A3D1LDS4	149.0	5.60519e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_35	1232449.BAHV02000016_gene1841	81.3	1.06e-18	HNH nucleases	N/A
Pfam	UHGV-0359403_35	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0359403_36	phrog_72	72.4	5.6e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359403_36	UniRef90_A0A8D9PDS2	159.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0359403_36	445972.ANACOL_01825	160.0	0	N/A	N/A
Pfam	UHGV-0359403_36	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0359403_36	PF05772,NF007281	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359403_37	UniRef90_B0PAM4	139.0	1.56e-38	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0359403_37	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_38	phrog_659	42.5	0.0000000000073	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0359403_38	UniRef90_A0A6N9QJT6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0359403_38	33035.JPJF01000135_gene5082	134.0	1.92e-36	N/A	N/A
Pfam	UHGV-0359403_38	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0359403_38	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_40	phrog_4973	68.7	7.9e-20	N/A	unknown function
UniRef90	UHGV-0359403_40	UniRef90_A0A3D3Y0P8	83.6	1.18e-19	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0359403_40	1072685.IX83_07155	58.5	0.000000000109	Helix-turn-helix domain	N/A
Pfam	UHGV-0359403_40	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0359403_40	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_42	760568.Desku_0919	112.0	2.75e-28	N/A	N/A
structural_annotation	UHGV-0359403_42	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_43	693746.OBV_43260	48.5	0.00000124	N/A	N/A
structural_annotation	UHGV-0359403_43	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0359403_44	UniRef90_UPI0018995761	88.6	8.25e-22	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0359403_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0359403_44	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0359403_45	K22300	46.7	0.00000000000061	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0359403_45	phrog_8	46.8	0.00000000000058	transcriptional regulator	transcription regulation
UniRef90	UHGV-0359403_45	UniRef90_UPI001E54DE4F	74.7	0.00000000000000518	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_45	1378168.N510_01712	62.4	0.000000000637	N/A	N/A
Pfam	UHGV-0359403_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0359403_45	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_48	477974.Daud_0794	73.9	0.0000000000000936	PFAM nuclease (SNase	N/A
Pfam	UHGV-0359403_48	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0359403_48	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
structural_annotation	UHGV-0359403_48	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_49	phrog_10292	62.9	3.4e-18	N/A	unknown function
UniRef90	UHGV-0359403_49	UniRef90_UPI0009DE3FE8	164.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0359403_49	665956.HMPREF1032_00562	147.0	4.76441e-44	TM2 domain	N/A
Pfam	UHGV-0359403_49	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0359403_49	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0359403_49	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
Pfam	UHGV-0359403_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0359403_51	PF12844	N/A	N/A	N/A	N/A
KOfam	UHGV-0359403_52	K14059	128.2	1.1e-37	int; integrase	N/A
PHROG	UHGV-0359403_52	phrog_1	139.8	2.4e-41	integrase	integration and excision
UniRef90	UHGV-0359403_52	UniRef90_UPI00195CC1EE	384.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0359403_52	1235835.C814_03141	192.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0359403_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0359403_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0359403_52	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_53	1226322.HMPREF1545_00079	103.0	2.54e-27	N/A	N/A
structural_annotation	UHGV-0359403_54	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_55	phrog_20016	190.7	0	N/A	unknown function
UniRef90	UHGV-0359403_55	UniRef90_A0A285PT46	189.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0359403_55	1226322.HMPREF1545_00077	172.0	0	N/A	N/A
structural_annotation	UHGV-0359403_55	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0359403_56	phrog_16490	135.8	9.3e-41	N/A	unknown function
eggNOG-mapper	UHGV-0359403_56	397290.C810_05212	127.0	8.69e-33	N/A	N/A
PHROG	UHGV-0359403_57	phrog_22984	72.2	3.4e-23	N/A	unknown function
PHROG	UHGV-0359403_58	phrog_21718	103.4	2.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0359403_58	397290.C810_05210	55.8	0.000000157	N/A	N/A
PHROG	UHGV-0359403_59	phrog_3754	104.5	8.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0359403_59	476272.RUMHYD_01764	162.0	0	N/A	N/A
structural_annotation	UHGV-0359403_62	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0359403_63	525254.HMPREF0072_1273	61.2	0.0000000012	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0359403_63	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A