UHGV-0372856 (vOTU-148415)

Viral Genome: UHGV-0372856

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0372856
vOTU ID	vOTU-148415
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR127617_141_66049_round13~7567876
Associated BioSample	SAMD00114863
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.69 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.96
Jumbo phage	No

Genome content
Genome length (bp)	27,247
GC content	33.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	96%
Average CDS length (bps)	637.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0372856_1	546271.Selsp_1313	52.0	0.00000528	tail collar domain protein	N/A
COG	UHGV-0372856_1	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0372856_1	NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_2	phrog_18608	49.7	0.000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0372856_2	1122917.KB899673_gene660	100.0	1.83e-20	N/A	N/A
structural_annotation	UHGV-0372856_3	PF12571	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_4	phrog_521	96.9	1.3e-28	tail protein	tail
UniRef90	UHGV-0372856_4	UniRef90_UPI001D081220	345.0	0	YmfQ family protein	N/A
eggNOG-mapper	UHGV-0372856_4	568816.Acin_1327	116.0	1.8e-28	N/A	N/A
Pfam	UHGV-0372856_4	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0372856_4	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372856_4	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_5	phrog_6	221.9	0	baseplate protein	tail
UniRef90	UHGV-0372856_5	UniRef90_UPI001D09317C	632.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0372856_5	568816.Acin_1959	333.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0372856_5	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0372856_5	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0372856_5	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_6	phrog_120	72.6	5e-21	baseplate protein	tail
UniRef90	UHGV-0372856_6	UniRef90_A0A412CHX1	268.0	0	N/A	N/A
eggNOG-mapper	UHGV-0372856_6	1232428.CAVO010000003_gene997	137.0	6.60999e-40	N/A	N/A
Pfam	UHGV-0372856_6	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0372856_6	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0372856_6	PF10934,MF_02010,TIGR03357,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_7	phrog_579	63.0	3.9e-18	N/A	unknown function
UniRef90	UHGV-0372856_7	UniRef90_A0A412CHC2	280.0	0	N/A	N/A
eggNOG-mapper	UHGV-0372856_7	1232428.CAVO010000003_gene998	171.0	0	N/A	N/A
Pfam	UHGV-0372856_7	PF10844	N/A	N/A	N/A	DUF2577
structural_annotation	UHGV-0372856_7	PF10844,TIGR00523	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_8	phrog_400	226.1	0	tail protein	tail
UniRef90	UHGV-0372856_8	UniRef90_A0A848BXY8	491.0	0	Lytic transglycosylase domain-containing protein	N/A
eggNOG-mapper	UHGV-0372856_8	1232428.CAVO010000003_gene999	408.0	0	NLP P60 protein	N/A
COG	UHGV-0372856_8	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0372856_8	PF14594,PF00877,NF033848,NF008096,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_9	phrog_5184	142.7	7.90332e-43	N/A	unknown function
UniRef90	UHGV-0372856_9	UniRef90_A0A0L0W6M8	127.0	1.45e-32	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0372856_9	1232428.CAVO010000003_gene1000	237.0	0	LysM domain	N/A
Pfam	UHGV-0372856_9	PF21821	N/A	N/A	Dit-like phage tail protein	Dit_like
COG	UHGV-0372856_9	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0372856_9	PF19266,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_10	phrog_1533	360.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0372856_10	UniRef90_A0A412CHP1	1302.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0372856_10	1232428.CAVO010000003_gene1001	537.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0372856_10	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0372856_10	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0372856_10	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0372856_10	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_11	phrog_2722	58.6	8.8e-17	N/A	unknown function
PHROG	UHGV-0372856_12	phrog_389	87.6	1.5e-25	tail protein XkdN-like	tail
UniRef90	UHGV-0372856_12	UniRef90_A0A7Y2PM55	112.0	2.24e-29	XkdN-like protein	N/A
eggNOG-mapper	UHGV-0372856_12	568816.Acin_1336	98.6	1.64e-24	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0372856_12	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0372856_12	PF08890	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_13	phrog_365	144.4	4.1058e-43	tail protein	tail
UniRef90	UHGV-0372856_13	UniRef90_A0A412CHD4	267.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0372856_13	1232428.CAVO010000003_gene1003	218.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0372856_13	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0372856_13	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_14	phrog_1480	365.9	0	tail sheath	tail
UniRef90	UHGV-0372856_14	UniRef90_UPI00195B2F80	715.0	0	phage tail sheath subtilisin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0372856_14	1232428.CAVO010000003_gene1004	506.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0372856_14	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0372856_14	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0372856_14	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_15	phrog_525	77.9	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0372856_15	397288.C806_00069	58.9	0.00000000797	N/A	N/A
Pfam	UHGV-0372856_15	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0372856_15	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_16	phrog_5	56.5	8.3e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0372856_16	UniRef90_A0A412CI38	257.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0372856_16	1232428.CAVO010000003_gene1006	97.4	3.24e-24	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0372856_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0372856_16	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_17	phrog_25	78.8	5.6e-23	head closure Hc1	connector
UniRef90	UHGV-0372856_17	UniRef90_UPI001CD5F5A7	225.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0372856_17	1232428.CAVO010000003_gene1007	116.0	2.99e-32	Phage head-tail joining protein	N/A
Pfam	UHGV-0372856_17	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0372856_17	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0372856_17	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0372856_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_18	phrog_40	81.8	5.2e-24	head-tail adaptor Ad1	connector
UniRef90	UHGV-0372856_18	UniRef90_A0A412CHC9	190.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0372856_18	66692.ABC1335	62.4	0.0000000000254	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0372856_18	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0372856_18	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0372856_18	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_19	phrog_32779	72.7	1.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0372856_19	1235803.C825_05332	65.5	0.00000000194	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0372856_19	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0372856_20	phrog_10	182.2	0	major head protein	head and packaging
UniRef90	UHGV-0372856_20	UniRef90_UPI000E53779F	693.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0372856_20	1341151.ASZU01000004_gene260	412.0	0	Phage capsid family	N/A
Pfam	UHGV-0372856_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0372856_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0372856_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0372856_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0372856_21	K06904	126.5	3e-37	N/A	N/A
PHROG	UHGV-0372856_21	phrog_80	143.0	2.79979e-42	head maturation protease	head and packaging
UniRef90	UHGV-0372856_21	UniRef90_A0A412CHQ0	365.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0372856_21	1232428.CAVO010000003_gene1010	181.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0372856_21	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0372856_21	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0372856_21	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0372856_21	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_22	phrog_12	185.4	0	portal protein	head and packaging
UniRef90	UHGV-0372856_22	UniRef90_UPI001D0729FC	829.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0372856_22	1232428.CAVO010000003_gene1011	451.0	0	Phage portal protein	N/A
Pfam	UHGV-0372856_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0372856_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0372856_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_23	phrog_9	406.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0372856_23	UniRef90_A0A412CHE2	1053.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0372856_23	1232428.CAVO010000003_gene1012	719.0	0	Phage Terminase	N/A
Pfam	UHGV-0372856_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0372856_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0372856_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0372856_23	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_24	phrog_1066	73.6	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0372856_24	1232428.CAVO010000003_gene1013	79.7	5.68e-18	N/A	N/A
structural_annotation	UHGV-0372856_24	PF05119,TIGR01558	N/A	N/A	N/A	N/A
KOfam	UHGV-0372856_25	K07451	41.4	0.000000000026	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0372856_25	phrog_119	63.7	2.8e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372856_25	UniRef90_UPI001D09358B	236.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0372856_25	1089548.KI783301_gene3222	100.0	5.18e-26	HNH endonuclease	N/A
Pfam	UHGV-0372856_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0372856_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0372856_26	PF11570,NF038178,COG1842	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0372856_27	1462526.BN990_01827	48.5	0.00000432	HNH nucleases	N/A
COG	UHGV-0372856_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0372856_29	phrog_36	52.0	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0372856_29	UniRef90_UPI00195CFC41	65.5	0.000000000461	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0372856_29	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0372856_29	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
KOfam	UHGV-0372856_30	K03111	153.2	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0372856_30	phrog_44	146.9	1.09301e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372856_30	UniRef90_UPI000E49F46F	240.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0372856_30	1122217.KB899575_gene2011	186.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0372856_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0372856_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0372856_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0372856_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0372856_30	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0372856_35	phrog_13202	95.9	4.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0372856_35	697284.ERIC2_c10640	53.9	0.00000129	N/A	N/A
KOfam	UHGV-0372856_37	K02314	564.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0372856_37	phrog_19	379.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372856_37	UniRef90_UPI001D079CA7	822.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0372856_37	1122217.KB899575_gene1971	414.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0372856_37	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0372856_37	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
NCBIFam	UHGV-0372856_37	TIGR00665.1	N/A	N/A	replicative DNA helicase	N/A
COG	UHGV-0372856_37	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0372856_37	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0372856_38	K02086	51.2	0.000000000000018	dnaD; DNA replication protein	N/A
PHROG	UHGV-0372856_38	phrog_5968	131.0	7.7e-39	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0372856_38	UniRef90_UPI001D08DC67	260.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0372856_38	469604.HMPREF0946_01101	122.0	1.48e-30	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0372856_38	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-0372856_38	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0372856_38	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0372856_38	PF09681,TIGR01714,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0372856_41	K07741	69.7	1e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0372856_41	phrog_130	174.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0372856_41	UniRef90_Q9A012	239.0	0	Putative antirepressor-phage associated	N/A
eggNOG-mapper	UHGV-0372856_41	1232449.BAHV02000010_gene2739	216.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0372856_41	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0372856_41	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0372856_41	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0372856_41	PF03374,PF09669,COG3645,COG3617	N/A	N/A	N/A	N/A